Changed Paths Bloom Filters
Subsystems (2)
cover Changed Paths Bloom Filters
Hey!
The commit graph feature brought in a lot of performance improvements across multiple commands. However, file based history continues to be a performance pain point, especially in large repositories.
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
Performance Gains: We tested the performance of git log -- path on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Future Work (not included in the scope of this series):
1. Supporting multiple path based revision walk
2. Adopting it in git blame logic.
3. Interactions with line log git log -L
This series is intended to start the conversation and many of the commit messages include specific call outs for suggestions and thoughts.
Cheers! Garima Singh
[1] https://lore.kernel.org/git/[email protected]/
[2]
https://lore.kernel.org/git/[email protected]/
Garima Singh (9):
commit-graph: add --changed-paths option to write
commit-graph: write changed paths bloom filters
commit-graph: use MAX_NUM_CHUNKS
commit-graph: document bloom filter format
commit-graph: write changed path bloom filters to commit-graph file.
commit-graph: test commit-graph write --changed-paths
commit-graph: reuse existing bloom filters during write. revision.c: use bloom filters to speed up path based revision walks
commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
Documentation/git-commit-graph.txt | 5 + .../technical/commit-graph-format.txt | 17 ++ Makefile | 1 + bloom.c | 257 +++++++++++++++++ bloom.h | 51 ++++ builtin/commit-graph.c | 9 +- ci/run-build-and-tests.sh | 1 + commit-graph.c | 116 +++++++- commit-graph.h | 9 +- revision.c | 67 ++++- revision.h | 5 + t/README | 3 + t/helper/test-read-graph.c | 4 + t/t4216-log-bloom.sh | 77 ++++++ t/t5318-commit-graph.sh | 2 + t/t5324-split-commit-graph.sh | 1 + t/t5325-commit-graph-bloom.sh | 258 ++++++++++++++++++ 17 files changed, 875 insertions(+), 8 deletions(-) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100755 t/t4216-log-bloom.sh create mode 100755 t/t5325-commit-graph-bloom.sh
base-commit: b02fd2accad4d48078671adf38fe5b5976d77304
Published-As: https://github.com/gitgitgadget/git/releases/tag/pr-497%2Fgarimasi514%2FcoreGit-bloomFilters-v1
Fetch-It-Via: git fetch https://github.com/gitgitgadget/git pr-497/garimasi514/coreGit-bloomFilters-v1
Pull-Request: https://github.com/gitgitgadget/git/pull/497
Signature · 1 line
gitgitgadget
PATCH 1/9 commit-graph: add --changed-paths option to write
From: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will soon allow users to compute bloom filters for the paths changed between a commit and its first significant parent, and write this information into the commit-graph file.
Note: This commit does not change any behavior. It only introduces the option and passes down the appropriate flag to the commit-graph.
RFC Notes:
1. We named the option --changed-paths to capture what the option does, instead of how it does it. The current implementation does this using bloom filters. We believe using --changed-paths however keeps the implementation open to other data structures.
All thoughts and suggestions for the name and this approach are welcome
2. Currently, a subsequent commit in this series will add tests that exercise this option. I plan to split that test commit across the series as appropriate.
--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- commit-graph.h | 3 ++- 3 files changed, 14 insertions(+), 3 deletions(-)
Documentation/git-commit-graph.txt +5 -0
@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can +take a while on large repositories. It provides significant performance gains +for getting file based history logs with `git log` ++ With the `--split` option, write the commit-graph as a chain of multiple commit-graph files stored in `<dir>/info/commit-graphs`. The new commits not already in the commit-graph are added in a new "tip" file. This file
builtin/commit-graph.c +7 -2
@@ -9,7 +9,7 @@static char const *const builtin_commit_graph_usage[] = {N_ ("git commit-graph verify [--object-dir <objdir>] [--shallow] [--[no-]progress]" ), -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
@@ -19,7 +19,7 @@ static const char * const builtin_commit_graph_verify_usage[] = { };static const char *const builtin_commit_graph_write_usage[] = { -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
@@ -32,6 +32,7 @@ static struct opts_commit_graph {int split;int shallow;int progress; +int enable_bloom_filters; } opts;static int graph_verify (int argc,const char **argv)
@@ -110,6 +111,8 @@ static int graph_write(int argc, const char **argv) N_("start walk at commits listed by stdin")),OPT_BOOL (0 ,"append" , &opts.append,N_ ("include all commits already in the commit-graph file" )), +OPT_BOOL (0 ,"changed-paths" , &opts.enable_bloom_filters, +N_ ("enable computation for changed paths" )),OPT_BOOL (0 ,"progress" , &opts.progress,N_ ("force progress reporting" )),OPT_BOOL (0 ,"split" , &opts.split, N_("allow writing an incremental commit-graph file")),
@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; +if (opts.enable_bloom_filters) + flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ; read_replace_refs =0 ;
commit-graph.h +2 -1
@@ -76,7 +76,8 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_PROGRESS = (1 <<1 ),COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ -COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ) +COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), +COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 ) }; struct split_commit_graph_opts {
Signature · 1 line
gitgitgadget
Re: [PATCH 1/9] commit-graph: add --changed-paths option to write
Quoted 6 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will soon allow users to compute bloom filters for the paths changed between a commit and its first significant parent, and write this information into the commit-graph file.
A slightly nitpicky comment.
First, I think it is "Bloom filter", not "bloom filter" (from the name of the person that discovered them, Burton Howard Bloom).
Second, I would rather that the commit message started with at least one sentence of describing purpose of this new option, not going straight to the technical details (i.e. using Bloom filters). Or in any other way describe that this option would make Git store some helper data that would help find out faster if a given path was changed in given commit.
Quoted 2 lines
Note: This commit does not change any behavior. It only introduces the option and passes down the appropriate flag to the commit-graph.
All right.
Personally, I don't have strong opinion for or against separating this change into its own patch.
Quoted 7 lines
RFC Notes:
1. We named the option --changed-paths to capture what the option does, instead of how it does it. The current implementation does this using bloom filters. We believe using --changed-paths however keeps the implementation open to other data structures.
All thoughts and suggestions for the name and this approach are welcome
It is all right name. Another option could be for example git commit-graph write --changeset-info, or something like that.
Quoted 4 lines
2. Currently, a subsequent commit in this series will add tests that exercise this option. I plan to split that test commit across the series as appropriate.
There is another thing, but one that could be left for the followup series, namely the configuration variables for this behavior. In the future it should be possible to switch some configuration variable to have this feature on by default when manually or automatically running git commit-graph write.
Documentation/git-commit-graph.txt
Quoted 13 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- commit-graph.h | 3 ++- 3 files changed, 14 insertions(+), 3 deletions(-)Documentation/git-commit-graph.txt +0
-0
It is nice to have option documented.
All right, the 'write' subcommand has the following synopsis:
'git commit-graph write' <options> [--object-dir <dir>] [--[no-]progress]
so the is no need to adjust it when adding a new option.
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 60
Quoted 8 lines
Documentation/git-commit-graph.txt +4
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can +take a while on large repositories. It provides significant performance gains +for getting file based history logs with `git log`
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
This might be not entirely clear for someone that is not familiar with Git jargon. Perhaps it would better read as "for getting history of a directory or a file with git log <path>", or something like that.
Side note: the sentence is missing its finishing full stop.
Quoted 18 lines
Documentation/git-commit-graph.txt +1
-0++ With the `--split` option, write the commit-graph as a chain of multiple commit-graph files stored in `<dir>/info/commit-graphs`. The new commits not already in the commit-graph are added in a new "tip" file. This filebuiltin/commit-graph.c +1
-1@@ -9,7 +9,7 @@static char const *const builtin_commit_graph_usage[] = {N_ ("git commit-graph verify [--object-dir <objdir>] [--shallow] [--[no-]progress]" ), -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
builtin/commit-graph.c static const char * const builtin_commit_graph_verify_usage[] = { · line 24
Quoted 7 lines
builtin/commit-graph.c +1
-1@@ -19,7 +19,7 @@ static const char * const builtin_commit_graph_verify_usage[] = { };static const char *const builtin_commit_graph_write_usage[] = { -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
I was at first wondering why the duplication (not caused by your patch, though), and then realized that it is to have usage for command, and for individual subcommands, separately.
builtin/commit-graph.c static struct opts_commit_graph { · line 35
Quoted 5 lines
builtin/commit-graph.c +1
-0@@ -32,6 +32,7 @@ static struct opts_commit_graph {int split;int shallow;int progress; +int enable_bloom_filters;
Why the field is called enable_bloom_filters, while option is called --changed-paths? I know it is not user-visible thing, so it would be easy to change if we ever go beyond Bloom filters, though...
So I am not against keeping it as it is currently.
Quoted 13 lines
builtin/commit-graph.c +2
-0} opts;static int graph_verify (int argc,const char **argv)@@ -110,6 +111,8 @@ static int graph_write(int argc, const char **argv) N_("start walk at commits listed by stdin")),OPT_BOOL (0 ,"append" , &opts.append,N_ ("include all commits already in the commit-graph file" )), +OPT_BOOL (0 ,"changed-paths" , &opts.enable_bloom_filters, +N_ ("enable computation for changed paths" )),OPT_BOOL (0 ,"progress" , &opts.progress,N_ ("force progress reporting" )),OPT_BOOL (0 ,"split" , &opts.split, N_("allow writing an incremental commit-graph file")),
builtin/commit-graph.c static int graph_write(int argc, const char **argv) · line 150
Quoted 5 lines
builtin/commit-graph.c +2
-0@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; +if (opts.enable_bloom_filters) + flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ;
Minor nitpick: are we all right having this ordering of options (not for example having opt.progress last)?
Disregarding this, it looks all right.
Quoted 8 lines
builtin/commit-graph.c +0
-0read_replace_refs =0 ;commit-graph.h +0
-0
commit-graph.h enum commit_graph_write_flags { · line 80
Quoted 6 lines
commit-graph.h +2
-1@@ -76,7 +76,8 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_PROGRESS = (1 <<1 ),COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ -COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ) +COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), +COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 )
I wonder if we should add comment describing the flag, like for the one above...
commit-graph.h enum commit_graph_write_flags { · line 83
Quoted 3 lines
commit-graph.h +0
-0};struct split_commit_graph_opts {
Best,
Signature · 1 line
Jakub Narębski
PATCH 2/9 commit-graph: write changed paths bloom filters
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
The changed path bloom filters help determine which paths changed between a commit and its first parent. We already have the "--changed-paths" option for the "git commit-graph write" subcommand, now actually compute them under that option. The COMMIT_GRAPH_WRITE_BLOOM_FILTERS flag enables this computation.
RFC Notes: Here are some details about the implementation and I would love to know your thoughts and suggestions for improvements here.
For details on what bloom filters are and how they work, please refer to
Dr. Derrick Stolee's blog post [1].
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-bloom-filters/
1. The implementation sticks to the recommended values of 7 and 10 for the number of hashes and the size of each entry, as described in the blog. The implementation while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
Note: The performance gains we have observed so far with these values is significant enough to not that we did not need to tweak these settings. The cover letter of this series has the details and the commit where we have git log use bloom filters.
2. As described in the blog and the linked technical paper therin, we do not need 7 independent hashing functions. We use the Murmur3 hashing scheme - seed it twice and then combine those to procure an arbitrary number of hash values.
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
[Call for advice] We currently cap writing bloom filters for commits with atmost 512 changed files. In the current implementation, we compute the diff, and then just throw it away once we see it has more than 512 changes. Any suggestiongs on how to reduce the work we are doing in this case are more than welcome.
[Call for advice] Would the git community like this commit to be split up into more granular commits? This commit could possibly be split out further with the bloom.c code in its own commit, to be used by the commit-graph in a subsequent commit. While I prefer it being contained in one commit this way, I am open to suggestions.
[Call for advice] Would a technical document explaining the exact details of the bloom filter implemenation and the hashing calculations be helpful? I will be adding details into Documentation/technical/commit-graph-format.txt, but the bloom filter code is an independent subsystem and could be used outside of the commit-graph feature. Is it worth a separate document, or should we apply "You Ain't Gonna Need It" principles?
[Call for advice] I plan to add unit tests for bloom.c, specifically to ensure that the hash algorithm and bloom key calculations are stable across versions.
--- Makefile | 1 + bloom.c | 201 +++++++++++++++++++++++++++++++++++++++++++++++++ bloom.h | 46 +++++++++++ commit-graph.c | 32 +++++++- 4 files changed, 279 insertions(+), 1 deletion(-) create mode 100644 bloom.c create mode 100644 bloom.h
Makefile +1 -0
@@ -838,6 +838,7 @@ LIB_OBJS += base85.o LIB_OBJS += bisect.o LIB_OBJS += blame.o LIB_OBJS += blob.o +LIB_OBJS += bloom.o LIB_OBJS += branch.o LIB_OBJS += bulk-checkin.o LIB_OBJS += bundle.o
bloom.c new file +201 -0
202 lines not on this page · raw message
bloom.h new file +46 -0
46 lines not on this page · raw message
commit-graph.c +31 -1
@@ -16,6 +16,7 @@#include "hashmap.h" #include "replace-object.h" #include "progress.h" +#include "bloom.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
@@ -794,9 +795,11 @@ struct write_commit_graph_context { unsigned append:1, report_progress:1, split:1, - check_oids:1; + check_oids:1, + bloom:1;const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_size; }; static void write_graph_chunk_fanout(struct hashfile *f,
@@ -1139,6 +1142,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{ +int i; +struct progress *progress =NULL ; + +load_bloom_filters (); + +if (ctx->report_progress) + progress =start_progress ( +_ ("Computing commit diff Bloom filters" ), + ctx->commits.nr); + +for (i =0 ; i < ctx->commits.nr; i++) { +struct commit *c = ctx->commits.list[i]; +struct bloom_filter *filter =get_bloom_filter (ctx->r, c); + ctx->total_bloom_filter_size +=sizeof (uint64_t ) * filter->len; +display_progress (progress, i +1 ); + } + +stop_progress (&progress); +} +static int add_ref_to_list (const char *refname,const struct object_id *oid,int flags,void *cb_data)
@@ -1791,6 +1816,8 @@ int write_commit_graph(const char *obj_dir, ctx->split = flags &COMMIT_GRAPH_WRITE_SPLIT ?1 :0 ; ctx->check_oids = flags &COMMIT_GRAPH_WRITE_CHECK_OIDS ?1 :0 ; ctx->split_opts = split_opts; + ctx->bloom = flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS ?1 :0 ; + ctx->total_bloom_filter_size =0 ;if (ctx->split) {struct commit_graph *g;
@@ -1885,6 +1912,9 @@ int write_commit_graph(const char *obj_dir,compute_generation_numbers (ctx); +if (ctx->bloom) +compute_bloom_filters (ctx); + res =write_commit_graph_file (ctx);if (ctx->split)
Signature · 1 line
gitgitgadget
Re: [PATCH 2/9] commit-graph: write changed paths bloom filters
spelling nit?
Quoted 6 lines · Garima Singh via GitGitGadget
1. The implementation sticks to the recommended values of 7 and 10 for the number of hashes and the size of each entry, as described in the blog. The implementation while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
Note: The performance gains we have observed so far with these values is significant enough to not that we did not need to tweak these settings.
s/not/note/ (first occurrence)
Quoted 2 lines
The cover letter of this series has the details and the commit where we have git log use bloom filters.
Philip
Re: [PATCH 2/9] commit-graph: write changed paths bloom filters
In reply to Garima Singh via GitGitGadgetQuoted 11 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
The changed path bloom filters help determine which paths changed between a commit and its first parent. We already have the "--changed-paths" option for the "git commit-graph write" subcommand, now actually compute them under that option. The
COMMIT_GRAPH_WRITE_BLOOM_FILTERSflag enables this computation.RFC Notes: Here are some details about the implementation and I would love to know your thoughts and suggestions for improvements here.
Quoted 6 lines
For details on what bloom filters are and how they work, please refer to
Dr. Derrick Stolee's blog post [1].
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-bloom-filters/1. The implementation sticks to the recommended values of 7 and 10 for the number of hashes and the size of each entry, as described in the blog.
Please provide references to original work for this. Derrick Stolee blog post references the following work:
Flavio Bonomi, Michael Mitzenmacher, Rina Panigrahy, Sushil Singh, George Varghese "An Improved Construction for Counting Bloom Filters"
http://theory.stanford.edu/~rinap/papers/esa2006b.pdf
https://doi.org/10.1007/11841036_61
However, we do not use Counting Bloom Filters, but ordinary Bloom Filters, if used in untypical way: instead of testing many elements (keys) against single filter, we test single element (path) against mainy filters.
Also, I'm not sure that values 10 bits per entry and 7 hash functions are recommended; the work states:
"For example, when n/m = 10 and k = 7 the false positive probability is just over 0.008."
Given false positive probablity we can calculate best choice for n/m and k.
On the other hand in https://arxiv.org/abs/1912.08258 we have
"For efficient memory usage, a Bloom filter with a false-positive
probability ϵ should use about − log_2(ϵ) hash functions [Broder2004]. At a false-positive probability of 1%, seven hash functions are thus required."
So k=7 being optimal is somewhat confirmed.
Quoted 2 lines
The implementation while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
All right.
Quoted 2 lines
Note: The performance gains we have observed so far with these values is significant enough to not that we did not need to tweak these settings.
^^^
s/not/note/
Did you try to tweak settings, i.e. numbers of bits per entry, number of hash functions (which is derivative of the former - at least the optimal number), the size of the block, the cutoff threshold value? It is not needed to be in this patch series - fine tuning is probably better left for later.
Quoted 2 lines
The cover letter of this series has the details and the commit where we have git log use bloom filters.
The second part of this sentence, from "and the commit..." is a bit unclear. Did you mean here that the future / subsequent commit in this patch series that makes Git actually use Bloom filters in git log -- <path> will have more details in its commit message?
Quoted 1 line
2. As described in the blog and the linked technical paper therin, we do not need
^^^^^^
s/therin/therein/
Quoted 2 lines
7 independent hashing functions. We use the Murmur3 hashing scheme - seed it twice and then combine those to procure an arbitrary number of hash values.
The "linked technical paper" in the blog post (which I would prefer to have linked directly to in the commit message) is
Peter C. Dillinger and Panagiotis Manolios
"Bloom Filters in Probabilistic Verification"
http://www.ccs.neu.edu/home/pete/pub/bloom-filters-verification.pdf
https://doi.org/10.1007/978-3-540-30494-4_26
Sidenote: it looks like it is a reference from Wikipedia on Bloom filters. This is according to authors the original paper with the _double hashing_ technique.
They also examine in much detail the optimal number of hash functions.
Quoted 2 lines
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
Do I understand it correctly that the size of filter is 10*(number of changed files) bits, rounded up to nearest multiple of 64?
How do you count renames and copies? As two changes?
Do I understand it correctly that commit with no changes in it (which can rarely happen) would have 64-bits i.e. 8-bytes Bloom filter of all
zeros: 0x0000000000000000?
How merges are handled? Does the filter uses all changed files, or just changes compared to first parent?
Quoted 6 lines
[Call for advice] We currently cap writing bloom filters for commits with atmost 512 changed files. In the current implementation, we compute the diff, and then just throw it away once we see it has more than 512 changes. Any suggestiongs on how to reduce the work we are doing in this case are more than welcome.
This got solved in "[PATCH] diff: halt tree-diff early after max_changes"
https://public-inbox.org/git/[email protected]/
Quoted 5 lines
[Call for advice] Would the git community like this commit to be split up into more granular commits? This commit could possibly be split out further with the
bloom.ccode in its own commit, to be used by the commit-graph in a subsequent commit. While I prefer it being contained in one commit this way, I am open to suggestions.
I think it might be a good idea to split this commit into purely Bloom filter implementation (bloom.c) AND unit tests for Bloom filter itself (which would probably involve some new test-tool).
I have not read further messages in the series [edit: they don't], so I don't know if such tests already exist or not. One could test for negative match, maybe also (for specific choice of hash function) for positive and maybe even false positive match, for filter size depending on the number of changes, for changes cap (maybe), maybe also for no-changes scenario.
As for splitting the main part of the series, I would envision it in the following way (which is of course only one possibility):
1. Implementation of generic-ish Bloom filter (with elements being strings / paths, and optimized to test single key against many filters, each taking small-ish space, variable size filter, limit on maximum number of elements).
Technical documentation in comments in bloom.h (description of API) and bloom.c (details of the algorithm, with references).
TODO: test-tool and unit tests.
2. Using per-commit Bloom filter(s) to store changeset information i.e. changed paths. This would implement in-memory storage (on slab) and creating Bloom filter out of commit and repository information.
Perhaps this should also get its own unit tests (that Bloom filter catches changed files, and excluding false positivess catches unchanged files).
3. Storing per-commit Bloom filters in the commit-graph file:
a.) writing Bloom filters data to commit-graph file, which means
designing the chunk(s) format,
b.) verifying Bloom filter chunks, at least sanity-checks c.) reading Bloom filters from commit-graph file into memory
Perhaps also some integration tests that the information is stored and retrieved correctly, and that verifying finds bugs in intentionally corrupted Bloom filter chunks.
4. Using Bloom filters to speed up git log -- <path> (and similar commands).
It would be nice to have some functional tests, and maybe some performance tests, if possible.
Quoted 6 lines
[Call for advice] Would a technical document explaining the exact details of the bloom filter implemenation and the hashing calculations be helpful? I will be adding details into
Documentation/technical/commit-graph-format.txt, but the bloom filter code is an independent subsystem and could be used outside of the commit-graph feature. Is it worth a separate document, or should we apply "You Ain't Gonna Need It" principles?
As nowadays technical reference documentation is being moved from Documentation/technical/api-*.txt to appropriate header files, maybe the documentation of Bloom filter API (and some technical documentation and references) be put in bloom.h? See for example comments in strbuf.h.
Quoted 2 lines
[Call for advice] I plan to add unit tests for
bloom.c, specifically to ensure that the hash algorithm and bloom key calculations are stable across versions.
Ah, so the unit tests for bloom.c does not exist, yet...
Quoted 16 lines
Signed-off-by Garima Singh <[email protected]>Helped-by Derrick Stolee <[email protected]>--- Makefile | 1 + bloom.c | 201 +++++++++++++++++++++++++++++++++++++++++++++++++ bloom.h | 46 +++++++++++ commit-graph.c | 32 +++++++- 4 files changed, 279 insertions(+), 1 deletion(-) create mode 100644 bloom.c create mode 100644 bloom.hMakefile +0
-0
Makefile LIB_OBJS += base85.o · line 844
Quoted 7 lines
Makefile +1
-0@@ -838,6 +838,7 @@ LIB_OBJS += base85.o LIB_OBJS += bisect.o LIB_OBJS += blame.o LIB_OBJS += blob.o +LIB_OBJS += bloom.o LIB_OBJS += branch.o LIB_OBJS += bulk-checkin.o LIB_OBJS += bundle.o
I'll put bloom.h first, to make it easier to review.
bloom.h line 5
Quoted 11 lines
bloom.h new file +5
-0@@ -0,0 +1,46 @@ +#ifndef BLOOM_H +#define BLOOM_H + +struct commit ; +struct repository ;
This would probably be missing if this patch was split in two:
introducing Bloom filter and saving Bloom filter in the repository metadata (in commit-graphh file).
bloom.h line 6
Quoted 1 line
bloom.h new file +1
-0+
O.K., the names of fields are descriptive enough so that this struct doesn't need detailed description in comment (like the next one).
bloom.h line 8
Quoted 2 lines
bloom.h new file +2
-0+struct bloom_filter_settings { +uint32_t hash_version;
Do we need full half-word for hash version?
bloom.h line 9
Quoted 1 line
bloom.h new file +1
-0+uint32_t num_hashes;
Do we need full 32-bits for number of hashes? The "Bloom Filters in Probabilistic Verification" paper mentioned in Stolee blog states that no one should need number of hashes greater than k=32 - the accuracy is so high that it doesn't matter that it is not optimal.
"Notice one last thing about Bloom filters in verification, if $m$ is
several gigabytes or less and $m/n$ calls for more than about 32 index functions, the accuracy is going to be so high that there is not much reason to use more than 32—for the next several years at least. In response to this, 3SPIN currently limits the user to $k = 32$. The point of this observation is that we do not have to worry about the runtime cost of $k$ being on the order of 64 or 100, because those choices do not really buy us anything over 32."
Here 'm' is the number of bits in Bloom filter, and m/n is number of bits per element added to filter.
bloom.h line 10
Quoted 1 line
bloom.h new file +1
-0+uint32_t bits_per_entry;
All right, we wouldn't really want large Bloom filters, as we use one filter per commit to match againts one key, not single Bloom filter to match againts many keys.
Quoted 4 lines
bloom.h new file +4
-0+}; + +#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 } +
bloom.h line 24
Quoted 10 lines
bloom.h new file +10
-0+/* +* A bloom_filter struct represents a data segment to +* use when testing hash values. The 'len' member +* dictates how many uint64_t entries are stored in +* 'data'. +*/ +struct bloom_filter { +uint64_t *data; +int len; +};
O.K., so it is single variable-sized (in 64-bit increments) Bloom filter bit vector (bitmap).
bloom.h line 34
Quoted 10 lines
bloom.h new file +10
-0+ +/* +* A bloom_key represents the k hash values for a +* given hash input. These can be precomputed and +* stored in a bloom_key for re-use when testing +* against a bloom_filter. +*/ +struct bloom_key { +uint32_t *hashes; +};
That is smart. I wonder however if it wouldn't be a good idea to 'typedef' a hash function return type.
I repeat myself: in Git case we have one key that we try to match against many Bloom filters which are never updated, while in an ordinary case many keys are matched against single Bloom filter - in many cases updated (with keys inserted to Bloom filter).
I wonder if somebody from academia have examined such situation. I couldn't find a good search query.
Sidenote: perhaps Xor or Xor+ filters from Graf & Lemire (2019)
https://arxiv.org/abs/1912.08258 would be better solution - they also assume unchanging filter. Though they are a very fresh proposal; also construction time might be important for Git.
https://github.com/FastFilter/xor_singleheader
bloom.h line 39
Quoted 5 lines
bloom.h new file +5
-0+ +void load_bloom_filters (void ); + +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c);
Those two functions really need API documentation on how they are used, if they are to be used in any other role, especially what is their calling convention? Why load_bloom_filters() doesn't take any parameters?
Anyway, if this patch would be split into pure Bloom filter implementation and Git use^W store of Bloom filters, then this would be left for the latter patch.
bloom.h line 44
Quoted 5 lines
bloom.h new file +5
-0+ +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings);
It is a bit strange that two basic Bloom filter operations, namely adding element to Bloom filter (and constructing Bloom filter), and testing whether element is in Bloom filter are not part of a public API...
This function should probably be documented, in particular the fact that *key is an in/out parameter. This could also be a good place to document the mechanism itself (i.e. our implementation of Bloom filter, with references), though it might be better to keep the details of how it works in the bloom.c - close to the actual source (while keeping description of API in bloom.h comments).
Quoted 12 lines
bloom.h new file +2
-0+ +#endif bloom.c new file +4
-0@@ -0,0 +1,201 @@ +#include "git-compat-util.h" +#include "bloom.h" +#include "commit-graph.h" +#include "object-store.h"
bloom.c line 14
Quoted 10 lines
bloom.c new file +10
-0+#include "diff.h" +#include "diffcore.h" +#include "revision.h" +#include "hashmap.h" + +#define BITS_PER_BLOCK 64 + +define_commit_slab(bloom_filter_slab, struct bloom_filter); + +struct bloom_filter_slab bloom_filters;
All right, so the Bloom filter data would be on slab. This should probably be mentioned in the commit message, like in
https://lore.kernel.org/git/[email protected]/
Sidenote: If I remember correctly one of the unmet prerequisites for switching to generation numbers v2 (corrected commit date with monotonic offsets) was moving 'generation' field out of 'struct commit' and on to slab (possibly also 'graph_pos'), and certainly having 'corrected_date' on slab (Inside-Out Object style). Which probably could be done with Coccinelle script...
bloom.c line 19
Quoted 5 lines
bloom.c new file +5
-0+ +struct pathmap_hash_entry { +struct hashmap_entry entry; +const char path[FLEX_ARRAY ]; +};
Hmmm... I wonder why use hashmap and not string_list. This is for adding path with leading directories to the Bloom filter, isn't it?
bloom.c line 26
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}
Does it actually work with count being negative? Shouldn't 'count' be of unsigned type, and if int32_t is needed, perhaps add an assertion (if needed)? I think it does not.
It looks like it is John Regehr [2] safe and compiler-friendly implementation, with explicit 8 in place of CHAR_BIT from <limits.h>, which should compile to "rotate" assembly instruction... it looks like it is the case, see https://godbolt.org/z/5JP1Jb (at least for C++ compiler).
[2]: https://en.wikipedia.org/wiki/Circular_shift
I wonder if this should, in the future, be a part of 'compat/', maybe even using compiler intrinsics for "rotate right" if available (see
https://stackoverflow.com/a/776523/46058). But that might be outside of the scope of this patch (perhaps outside of choosing function name).
bloom.c line 27
Quoted 1 line
bloom.c new file +1
-0+
It would be nice to have reference to the source of algorithm, or to the code that was borrowed for this in the header comment for the following function.
I will be comparing the algorithm itself in Wikipedia
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
and its implementation in C in qLibc library (BSD licensed)
https://github.com/wolkykim/qlibc/blob/03a8ce035391adf88d6d755f9a26967c16a1a567/src/utilities/qhash.c#L258
bloom.c line 33
Quoted 6 lines
bloom.c new file +6
-0+static uint32_t seed_murmur3 (uint32_t seed,const char *data,int len) +{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const int32_t r1 =15 ; +const int32_t r2 =13 ;
Those two: r1 and r1, probably should be both uint32_t type.
bloom.c line 38
Quoted 5 lines
bloom.c new file +5
-0+const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ; +const char *tail;
*tail should probably be 'uint8_t', not 'char', isn't it?
bloom.c line 40
Quoted 2 lines
bloom.c new file +2
-0+ +int len4 = len /sizeof (uint32_t );
All length variables and parameters, i.e. len, len4, i, could possibly be size_t and not int type.
bloom.c line 43
Quoted 3 lines
bloom.c new file +3
-0+ +const uint32_t *blocks = (const uint32_t *)data; +
Some implementations copy seed (or assume seed=0) to the local variable named h or hash.
bloom.c line 49
Quoted 6 lines
bloom.c new file +6
-0+uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i]; + k *= c1; + k =rotate_right (k, r1);
Shouldn't it be *rotate_left* (ROL), not rotate_right (ROR)??? This affects all cases / uses.
bloom.c line 57
Quoted 8 lines
bloom.c new file +8
-0+ k *= c2; + + seed ^= k; + seed =rotate_right (seed, r2) * m + n; + } + + tail = (data + len4 *sizeof (uint32_t )); +
We could have reused variable k, like the implementation in qLibc does, instead of introducing new k1 variable, but this way it is more clean. Or name it remainingBytes instead of k1
Quoted 17 lines
bloom.c new file +17
-0+switch (len & (sizeof (uint32_t ) -1 )) + { +case 3 : + k1 ^= ((uint32_t )tail[2 ]) <<16 ; +/*-fallthrough*/ +case 2 : + k1 ^= ((uint32_t )tail[1 ]) <<8 ; +/*-fallthrough*/ +case 1 : + k1 ^= ((uint32_t )tail[0 ]) <<0 ; + k1 *= c1; + k1 =rotate_right (k1, r1); + k1 *= c2; + seed ^= k1; +break ; + } +
bloom.c line 84
Quoted 10 lines
bloom.c new file +10
-0+ seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); + +return seed; +} +
It would be nice to have header comment describing what this function is intended to actually do.
bloom.c line 88
Quoted 4 lines
bloom.c new file +4
-0+static inline uint64_t get_bitmask (uint32_t pos) +{ +return ((uint64_t )1 ) << (pos & (BITS_PER_BLOCK -1 )); +}
Sidenote: I wonder if ewah/bitmap.c implements something similar. Certainly possible consolidation, if any possible exists, should be left for the future.
bloom.c line 97
Quoted 9 lines
bloom.c new file +9
-0+ +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings) +{ +int i; +uint32_t seed0 =0x293ae76f ; +uint32_t seed1 =0x7e646e2c ;
Where did those constants came from? It would be nice to have a reference either in header comment (in bloom.h or bloom.c), or in a commit message, or both.
Note that above *constants* are each used only once.
bloom.c line 100
Quoted 3 lines
bloom.c new file +3
-0+ +uint32_t hash0 =seed_murmur3 (seed0, data, len); +uint32_t hash1 =seed_murmur3 (seed1, data, len);
Those are constant values, so perhaps they should be const uint32_t.
bloom.c line 104
Quoted 4 lines
bloom.c new file +4
-0+ + key->hashes = (uint32_t *)xcalloc (settings->num_hashes,sizeof (uint32_t )); +for (i =0 ; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1;
It looks like this code implements the double hashing technique given in Eq. (4) in http://www.ccs.neu.edu/home/pete/pub/bloom-filters-verification.pdf
that is "Bloom Filters in Probabilistic Verification".
Note that Dillinger and Manolios in this paper propose also _enhanced_ double hashing algorithm (Algorithm 2 on page 11), which has closed form given by Eq. (6) - with better science-theoretical properties at similar cost.
It might be a good idea to explicitly state in the header comment that all arithmetic is performed with unsigned 32-bit integers, which means that operations are performed modulo 2^32. Or it might not be needed.
bloom.c line 116
Quoted 12 lines
bloom.c new file +12
-0+} + +static void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings) +{ +int i; +uint64_t mod = filter->len *BITS_PER_BLOCK ; + +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_BLOCK ;
All right. Because Bloom filters for different commits (and the same key) may have different lengths, we can perform modulo operation only here. hash_mod is i-th hash modulo size of filter, and block_pos is the block the '1' bit would go into.
bloom.c line 118
Quoted 2 lines
bloom.c new file +2
-0+ + filter->data[block_pos] |=get_bitmask (hash_mod);
I'm not quite convinced that get_bitmask() is a good name: this function returns bitmap with hash_mod's bit set to 1. On the other hand it doesn't matter, because it is static (file-local) helper function.
Never mind then.
bloom.c line 125
Quoted 7 lines
bloom.c new file +7
-0+ } +} + +void load_bloom_filters (void ) +{ +init_bloom_filter_slab (&bloom_filters); +}
Why *load* if all it does is initialize?
bloom.c line 128
Quoted 3 lines
bloom.c new file +3
-0+ +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c)
I will not comment on this function; see Jeff King reply and Derrick Stolee reply.
Quoted 1 line
bloom.c new file +1
-0+{
[...]
Quoted 2 lines
+}
\ No newline at end of file
Why there is no newline at the end of the file? Accident?
Quoted 13 lines
commit-graph.c +1
-0@@ -16,6 +16,7 @@#include "hashmap.h" #include "replace-object.h" #include "progress.h" +#include "bloom.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
commit-graph.c struct write_commit_graph_context { · line 799
Quoted 6 lines
commit-graph.c +2
-1@@ -794,9 +795,11 @@ struct write_commit_graph_context { unsigned append:1, report_progress:1, split:1, - check_oids:1; + check_oids:1, + bloom:1;
Very minor nitpick: why bloom and not bloom_filter?
commit-graph.c struct write_commit_graph_context { · line 802
Quoted 3 lines
commit-graph.c +1
-0const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_size;
All right, I guess size of all Bloom filters would fit in uint32_t, no need for size_t, is it?
Shouldn't it be total_bloom_filters_size -- it is not a single Bloom filter, but many (minor nitpick)?
Quoted 13 lines
commit-graph.c +6
-0}; static void write_graph_chunk_fanout(struct hashfile *f,@@ -1139,6 +1142,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{ +int i; +struct progress *progress =NULL ; + +load_bloom_filters ();
commit-graph.c static void compute_generation_numbers(struct write_commit_graph_context *ctx) · line 1160
Quoted 10 lines
commit-graph.c +10
-0+ +if (ctx->report_progress) + progress =start_progress ( +_ ("Computing commit diff Bloom filters" ), + ctx->commits.nr); + +for (i =0 ; i < ctx->commits.nr; i++) { +struct commit *c = ctx->commits.list[i]; +struct bloom_filter *filter =get_bloom_filter (ctx->r, c); + ctx->total_bloom_filter_size +=sizeof (uint64_t ) * filter->len;
Wouldn't it be more future proof instead of using sizeof(uint64_t) to use sizeof(filter->data[0]) here? This may be not worth it, and be less readable (we have hard-coded use of 64-bits blocks in other places).
Quoted 10 lines
commit-graph.c +6
-0+display_progress (progress, i +1 ); + } + +stop_progress (&progress); +} +static int add_ref_to_list (const char *refname,const struct object_id *oid,int flags,void *cb_data)
commit-graph.c int write_commit_graph(const char *obj_dir, · line 1819
Quoted 4 lines
commit-graph.c +1
-0@@ -1791,6 +1816,8 @@ int write_commit_graph(const char *obj_dir, ctx->split = flags &COMMIT_GRAPH_WRITE_SPLIT ?1 :0 ; ctx->check_oids = flags &COMMIT_GRAPH_WRITE_CHECK_OIDS ?1 :0 ; ctx->split_opts = split_opts; + ctx->bloom = flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS ?1 :0 ;
All right, this flag was defined in [PATCH 1/9].
The ordering of setting ctx members looks a bit strange. Now it is neither check flags firsts, neither keep related stuff together (see ctx->split vs ctx->split_opts). This is a very minor nitpick.
Quoted 5 lines
commit-graph.c +1
-0+ ctx->total_bloom_filter_size =0 ;if (ctx->split) {struct commit_graph *g;
commit-graph.c int write_commit_graph(const char *obj_dir, · line 1920
Quoted 9 lines
commit-graph.c +3
-0@@ -1885,6 +1912,9 @@ int write_commit_graph(const char *obj_dir,compute_generation_numbers (ctx); +if (ctx->bloom) +compute_bloom_filters (ctx); + res =write_commit_graph_file (ctx);if (ctx->split)
Regards,
Signature · 1 line
Jakub Narębski
Re: [PATCH 2/9] commit-graph: write changed paths bloom filters
Quoted 7 lines · Jakub Narebski
Quoted 2 lines · Garima Singh via GitGitGadget
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
Do I understand it correctly that the size of filter is 10*(number of changed files) bits, rounded up to nearest multiple of 64?
Yes.
Quoted 9 lines
bloom.c line 19
Quoted 5 lines
bloom.c new file +5
-0+ +struct pathmap_hash_entry { +struct hashmap_entry entry; +const char path[FLEX_ARRAY ]; +};Hmmm... I wonder why use hashmap and not
string_list. This is for adding path with leading directories to the Bloom filter, isn't it?
Yes. We do not want to repeat directories in the filter.
Thanks!
Garima Singh
PATCH 3/9 commit-graph: use MAX_NUM_CHUNKS
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
This is a minor cleanup to make it easier to change the number of chunks being written to the commit-graph in the future.
--- commit-graph.c | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-)
commit-graph.c +3 -2
@@ -24,6 +24,7 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ +#define MAX_NUM_CHUNKS 5#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)
@@ -1381,8 +1382,8 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)int fd;struct hashfile *f;struct lock_file lk =LOCK_INIT ; -uint32_t chunk_ids[6 ]; -uint64_t chunk_offsets[6 ]; +uint32_t chunk_ids[MAX_NUM_CHUNKS +1 ]; +uint64_t chunk_offsets[MAX_NUM_CHUNKS +1 ];const unsigned hashsz = the_hash_algo->rawsz;struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;
Signature · 1 line
gitgitgadget
Re: [PATCH 3/9] commit-graph: use MAX_NUM_CHUNKS
Quoted 4 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
This is a minor cleanup to make it easier to change the number of chunks being written to the commit-graph in the future.
Very minor nit: in the whole commit message it is not stated explicitly what MAX_NUM_CHUNKS is for, though it is very easy to guess (from the name itself).
Quoted 11 lines
Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-)commit-graph.c +0
-0
commit-graph.c line 27
Quoted 4 lines
commit-graph.c +1
-0@@ -24,6 +24,7 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ +#define MAX_NUM_CHUNKS 5
Minor nit: MAX_NUM_CHUNKS or MAX_CHUNKS?
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1386
Quoted 11 lines
commit-graph.c +2
-2#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)@@ -1381,8 +1382,8 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)int fd;struct hashfile *f;struct lock_file lk =LOCK_INIT ; -uint32_t chunk_ids[6 ]; -uint64_t chunk_offsets[6 ]; +uint32_t chunk_ids[MAX_NUM_CHUNKS +1 ]; +uint64_t chunk_offsets[MAX_NUM_CHUNKS +1 ];
Looks good. I guess we won't ever have more chunks than 5:
OIDF, OIDL, CDAT, EDGE, BASE (and they cannot repeat, and last two are optional).
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1389
Quoted 3 lines
commit-graph.c +0
-0const unsigned hashsz = the_hash_algo->rawsz;struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;
Good.
Looks good to me.
Signature · 1 line
Jakub Narębski
PATCH 4/9 commit-graph: document bloom filter format
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Update the technical documentation for commit-graph-format with BIDX and BDAT chunk information.
RFC Notes:
1. [Call for advice] We specifically mention that we are using bloom filters in this technical document. Should this document also be made open to other data structures in the future, with versioning information?
2. [Call for advice] We are also not describing the explicit nature of how we store the bloom filter binary data. Would it be useful to document details about the hash algorithm, the number of hashes and the specific seed values we are using in a separate document, or perhaps in a separate section in this document?
--- Documentation/technical/commit-graph-format.txt | 17 +++++++++++++++++ 1 file changed, 17 insertions(+)
Documentation/technical/commit-graph-format.txt +17 -0
@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file. +- The bloom filter of the commit carrying the paths that were changed between + the commit and it's first parent. + These positional references are stored as unsigned 32-bit integers corresponding to the array position within the list of commit OIDs. Due to some special constants we use to track parents, we can store at most
@@ -93,6 +96,20 @@ CHUNK DATA: positions for the parents until reaching a value with the most-significant bit on. The other bits correspond to the position of the last parent. + Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) [Optional] + For each commit we store the offset of its bloom filter in the BDAT chunk + as follows: + BIDX[i] = number of 8-byte words in all the bloom filters from commit 0 to + commit i (inclusive) + + Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional] + * It starts with three 32 bit integers for the + - version of the hash algorithm being used + - the number of hashes used in the computation + - the number of bits per entry + * The rest of the chunk is the concatenation of all the computed bloom + filters for the commits in lexicographic order. + Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional] This list of H-byte hashes describe a set of B commit-graph files that form a commit-graph chain. The graph position for the ith commit in this
Signature · 1 line
gitgitgadget
Re: [PATCH 4/9] commit-graph: document bloom filter format
Quoted 10 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Update the technical documentation for commit-graph-format with BIDX and BDAT chunk information.
RFC Notes:
1. [Call for advice] We specifically mention that we are using Bloom filters in this technical document. Should this document also be made open to other data structures in the future, with versioning information?
I'm not sure. In theory we might want to switch to another probabilistic set inclusion query structure, like xor filters or cuckoo hashing.
On one hand side we could use separate chunks (e.g. XIDX, XDAT for xor filters), on the other hand we need only one such structure. On the gripping hand this can be left for the future, if needed.
Sidenote: using Bloom filters is somewhat encoded in the name of chunk (B from Bloom filter). I don't have a better poposal for 4-char name (XIDX / XDAT for cXange? CHDX / CHDT for CHange? FIDX / FDAT for changed Files?... I don't know).
Quoted 6 lines
2. [Call for advice] We are also not describing the explicit nature of how we store the bloom filter binary data. Would it be useful to document details about the hash algorithm, the number of hashes and the specific seed values we are using in a separate document, or perhaps in a separate section in this document?
I think it would be best to keep description of the commit graph format concise. The details about Bloom filter implementation would be better put in Documentation/technical/commit-graph.txt in my opinion, together with reasoning behind it (perhaps borrowing from Derrick Stolee blog post).
This could be done as a separate patch.
Quoted 12 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- Documentation/technical/commit-graph-format.txt | 17 +++++++++++++++++ 1 file changed, 17 insertions(+)Documentation/technical/commit-graph-format.txt +0
-0
Documentation/technical/commit-graph-format.txt metadata, including: · line 21
Quoted 5 lines
Documentation/technical/commit-graph-format.txt +2
-0@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file. +- The bloom filter of the commit carrying the paths that were changed between + the commit and it's first parent.
s/bloom/Bloom/ and s/it's/its/
I am not sure about exact wording, but I could at this time think of a better but concise way of stating it.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 103
Quoted 13 lines
Documentation/technical/commit-graph-format.txt +6
-0+ These positional references are stored as unsigned 32-bit integers corresponding to the array position within the list of commit OIDs. Due to some special constants we use to track parents, we can store at most@@ -93,6 +96,20 @@ CHUNK DATA: positions for the parents until reaching a value with the most-significant bit on. The other bits correspond to the position of the last parent. + Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) [Optional] + For each commit we store the offset of its bloom filter in the BDAT chunk + as follows: + BIDX[i] = number of 8-byte words in all the bloom filters from commit 0 to + commit i (inclusive)
I think it would be better for consistency and ease of reading to follow the example of OID Fanout (OIDF) chunk description:
+ Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) (N * 4 bytes) [Optional]
+ The ith entry, BIDX[i], stores the number of 8-byte word blocks + in all Bloom filters from commit 0 up to commit i (inclusive) + in lexicographical order.
Maybe even add the following to make implementing it easier:
+ Data for Bloom filter for i-th commit spans from BIDX[i-1] to
+ BIDX[i] (plus header length), where we take BIDX[-1] to be 0.
Is it possible for (BIDX[i] - BIDX[i-1]) to be zero (no Bloom filter), for example for commits with more than 512 changes? Or is this case handled by 1 8-byte word Bloom filter of all bits sets to '1', i.e. 0xffffffffffffffff?
How the case of too many changes is distingushed from the case of no changes (git commit --allow-empty, or git merge --ours)? Is the case of no changes uninteresting, i.e. Bloom filter consisting of zero, that is with all bits set to '0'?
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 106
Quoted 3 lines
Documentation/technical/commit-graph-format.txt +3
-0+ + Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional] + * It starts with three 32 bit integers for the
I would say "It starts with the header consisting of three unsigned 32-bit integers:" (but current version is not bad).
I wonder if this metadata should perhaps be put in a separate chunk, BMET... (Bloom filter METadata).
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 107
Quoted 1 line
Documentation/technical/commit-graph-format.txt +1
-0+ - version of the hash algorithm being used
This number not only encodes that the base hash algorithm being used is 32-bit Murmur3 hash, but that 'k' hashes used in the computation are created out of Murmur3 hash using double hashing technique, and specifies two specific seed values for this double hashing technique.
[Maybe we should store those two seed values here too?]
It might be important to say that the currently supported version is '1', and if Git encounters unknown hashing algorithm version it should not use Bloom filter data.
Unless we store encoded _name_ of the hash algorithm, e.g. bytes 'm','u','r','3' for MurmurHash3_32... though it is about more than a base hash.
Do we need whole 4 bytes for hash version, or is it for ease of use and alignment?
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 108
Quoted 1 line
Documentation/technical/commit-graph-format.txt +1
-0+ - the number of hashes used in the computation
All right. Perhaps we should test in the future patches that the value different from the default of 7 would also work.
Also 8-bits / 1 byte for number of hashes (hash functions) should be
enough: as I have written in prevous reply there is no need for k > 32.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 109
Quoted 1 line
Documentation/technical/commit-graph-format.txt +1
-0+ - the number of bits per entry
This is important for construction of Bloom filter, but I think it is not necessary to use it -- so it may not be necessary to store it.
Would also fit in a single byte: we don't need exceedingly low false positive probability.
We could use it to estimate the false positive probability, and...
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 111
Quoted 2 lines
Documentation/technical/commit-graph-format.txt +2
-0+ * The rest of the chunk is the concatenation of all the computed bloom + filters for the commits in lexicographic order.
+ * The rest of the chunk is the concatenation of all the computed Bloom
+ filters for the commits in lexicographic order.
It would be, I think, a good idea to make it explicit that BDAT is present iff BIDX is present (iff == if and only if), i.e. that either both or neither of those chunks should be present.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 115
Quoted 4 lines
Documentation/technical/commit-graph-format.txt +1
-0+ Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional] This list of H-byte hashes describe a set of B commit-graph files that form a commit-graph chain. The graph position for the ith commit in this
Best,
Signature · 1 line
Jakub Narębski
PATCH 5/9 commit-graph: write changed path bloom filters to commit-graph file.
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Write bloom filters to the commit-graph using the format described in Documentation/technical/commit-graph-format.txt
--- commit-graph.c | 81 +++++++++++++++++++++++++++++++++++++++++++++++++- commit-graph.h | 5 ++++ 2 files changed, 85 insertions(+), 1 deletion(-)
commit-graph.c +80 -1
@@ -24,7 +24,9 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ -#define MAX_NUM_CHUNKS 5 +#define GRAPH_CHUNKID_BLOOMINDEXES 0x42494458/* "BIDX" */ +#define GRAPH_CHUNKID_BLOOMDATA 0x42444154/* "BDAT" */ +#define MAX_NUM_CHUNKS 7#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)
@@ -282,6 +284,32 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, chunk_repeated =1 ; else graph->chunk_base_graphs = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMINDEXES : +if (graph->chunk_bloom_indexes) + chunk_repeated =1 ; +else + graph->chunk_bloom_indexes = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMDATA : +if (graph->chunk_bloom_data) + chunk_repeated =1 ; +else { +uint32_t hash_version; + graph->chunk_bloom_data = data + chunk_offset; + hash_version =get_be32 (data + chunk_offset); + +if (hash_version !=1 ) +break ; + + graph->settings =xmalloc (sizeof (struct bloom_filter_settings )); + graph->settings->hash_version = hash_version; + graph->settings->num_hashes =get_be32 (data + chunk_offset +4 ); + graph->settings->bits_per_entry =get_be32 (data + chunk_offset +8 ); + } +break ; }if (chunk_repeated) {
@@ -996,6 +1024,39 @@ static void write_graph_chunk_extra_edges(struct hashfile *f, } } +static void write_graph_chunk_bloom_indexes (struct hashfile *f, +struct write_commit_graph_context *ctx) +{ +struct commit **list = ctx->commits.list; +struct commit **last = ctx->commits.list + ctx->commits.nr; +uint32_t cur_pos =0 ; + +while (list < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); + cur_pos += filter->len; +hashwrite_be32 (f, cur_pos); + list++; + } +} + +static void write_graph_chunk_bloom_data (struct hashfile *f, +struct write_commit_graph_context *ctx, +struct bloom_filter_settings *settings) +{ +struct commit **first = ctx->commits.list; +struct commit **last = ctx->commits.list + ctx->commits.nr; + +hashwrite_be32 (f, settings->hash_version); +hashwrite_be32 (f, settings->num_hashes); +hashwrite_be32 (f, settings->bits_per_entry); + +while (first < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *first); +hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); + first++; + } +} +static int oid_compare (const void *_a,const void *_b) {const struct object_id *a = (const struct object_id *)_a;
@@ -1388,6 +1449,7 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;struct object_id file_hash; +struct bloom_filter_settings bloom_settings =DEFAULT_BLOOM_FILTER_SETTINGS ;if (ctx->split) {struct strbuf tmp_file =STRBUF_INIT ;
@@ -1432,6 +1494,12 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx) chunk_ids[num_chunks] =GRAPH_CHUNKID_EXTRAEDGES ; num_chunks++; } +if (ctx->bloom) { + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMINDEXES ; + num_chunks++; + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMDATA ; + num_chunks++; + }if (ctx->num_commit_graphs_after >1 ) { chunk_ids[num_chunks] =GRAPH_CHUNKID_BASE ; num_chunks++;
@@ -1450,6 +1518,13 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)4 * ctx->num_extra_edges; num_chunks++; } +if (ctx->bloom) { + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] +sizeof (uint32_t ) * ctx->commits.nr; + num_chunks++; + + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] +sizeof (uint32_t ) *3 + ctx->total_bloom_filter_size; + num_chunks++; + }if (ctx->num_commit_graphs_after >1 ) { chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] + hashsz * (ctx->num_commit_graphs_after -1 );
@@ -1487,6 +1562,10 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)write_graph_chunk_data (f, hashsz, ctx);if (ctx->num_extra_edges)write_graph_chunk_extra_edges (f, ctx); +if (ctx->bloom) { +write_graph_chunk_bloom_indexes (f, ctx); +write_graph_chunk_bloom_data (f, ctx, &bloom_settings); + }if (ctx->num_commit_graphs_after >1 &&write_graph_chunk_base (f, ctx)) {return -1 ;
commit-graph.h +5 -0
@@ -10,6 +10,7 @@#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"struct commit ; +struct bloom_filter_settings ;char *get_commit_graph_filename (const char *obj_dir);int open_commit_graph (const char *graph_file,int *fd,struct stat *st);
@@ -58,6 +59,10 @@ struct commit_graph {const unsigned char *chunk_commit_data;const unsigned char *chunk_extra_edges;const unsigned char *chunk_base_graphs; +const unsigned char *chunk_bloom_indexes; +const unsigned char *chunk_bloom_data; + +struct bloom_filter_settings *settings; };struct commit_graph *load_commit_graph_one_fd_st (int fd,struct stat *st);
Signature · 1 line
gitgitgadget
Re: [PATCH 5/9] commit-graph: write changed path bloom filters to commit-graph file.
Quoted 7 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Write bloom filters to the commit-graph using the format described in
Documentation/technical/commit-graph-format.txtHelped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>
Looks good to me.
Quoted 10 lines
--- commit-graph.c | 81 +++++++++++++++++++++++++++++++++++++++++++++++++- commit-graph.h | 5 ++++ 2 files changed, 85 insertions(+), 1 deletion(-)commit-graph.c +0
-0
commit-graph.c line 29
Quoted 7 lines
commit-graph.c +3
-1@@ -24,7 +24,9 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ -#define MAX_NUM_CHUNKS 5 +#define GRAPH_CHUNKID_BLOOMINDEXES 0x42494458/* "BIDX" */ +#define GRAPH_CHUNKID_BLOOMDATA 0x42444154/* "BDAT" */ +#define MAX_NUM_CHUNKS 7
Very minor nitpick: shouldn't we follow the order in the commit-graph-format.txt document (i.e. "BASE" as last chunk and last preprocessor constant)?
Quoted 5 lines
commit-graph.c +0
-0#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)@@ -282,6 +284,32 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, chunk_repeated =1 ;
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 294
Quoted 10 lines
commit-graph.c +8
-0else graph->chunk_base_graphs = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMINDEXES : +if (graph->chunk_bloom_indexes) + chunk_repeated =1 ; +else + graph->chunk_bloom_indexes = data + chunk_offset; +break ;
All right.
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 302
Quoted 8 lines
commit-graph.c +8
-0+ +case GRAPH_CHUNKID_BLOOMDATA : +if (graph->chunk_bloom_data) + chunk_repeated =1 ; +else { +uint32_t hash_version; + graph->chunk_bloom_data = data + chunk_offset; + hash_version =get_be32 (data + chunk_offset);
All right, now I see why all those header values for BDAT chunk are defined to be 32-bit integers. For code simplicity.
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 305
Quoted 3 lines
commit-graph.c +3
-0+ +if (hash_version !=1 ) +break ;
What does it mean for Git? Behave as if there were no Bloom filter data?
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 310
Quoted 5 lines
commit-graph.c +5
-0+ + graph->settings =xmalloc (sizeof (struct bloom_filter_settings )); + graph->settings->hash_version = hash_version; + graph->settings->num_hashes =get_be32 (data + chunk_offset +4 ); + graph->settings->bits_per_entry =get_be32 (data + chunk_offset +8 );
All right, looks O.K.
Quoted 12 lines
commit-graph.c +5
-0+ } +break ; }if (chunk_repeated) {@@ -996,6 +1024,39 @@ static void write_graph_chunk_extra_edges(struct hashfile *f, } } +static void write_graph_chunk_bloom_indexes (struct hashfile *f, +struct write_commit_graph_context *ctx) +{
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1039
Quoted 10 lines
commit-graph.c +10
-0+struct commit **list = ctx->commits.list; +struct commit **last = ctx->commits.list + ctx->commits.nr; +uint32_t cur_pos =0 ; + +while (list < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); + cur_pos += filter->len; +hashwrite_be32 (f, cur_pos); + list++; + }
Why not follow the write_graph_chunk_oids() example, instead of write_graph_chunk_data(), that is use simply:
+ struct commit **list = ctx->commits.list;
+ uint32_t cur_pos = 0;
+
+ for (count = 0; count < ctx->commits.nr; count++, list++) {
+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list);
+ cur_pos += filter->len;
+ hashwrite_be32(f, cur_pos);
+ }I guess using here
+ cur_pos += get_bloom_filter(ctx->r, *list)->len;
would be too cryptic, and hard to debug?
Also, wouldn't we need
+ display_progress(ctx->progress, ++ctx->progress_cnt);
before hashwrite_be32()?
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1046
Quoted 7 lines
commit-graph.c +7
-0+} + +static void write_graph_chunk_bloom_data (struct hashfile *f, +struct write_commit_graph_context *ctx, +struct bloom_filter_settings *settings) +{ +struct commit **first = ctx->commits.list;
Even if we decide to use while loop, like write_graph_chunk_data(), and not for loop, like write_graph_chunk_oids(), why the change from struct commit **list = ... to struct commit **first = ...?
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1051
Quoted 5 lines
commit-graph.c +5
-0+struct commit **last = ctx->commits.list + ctx->commits.nr; + +hashwrite_be32 (f, settings->hash_version); +hashwrite_be32 (f, settings->num_hashes); +hashwrite_be32 (f, settings->bits_per_entry);
All right, simple.
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1054
Quoted 3 lines
commit-graph.c +3
-0+ +while (first < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *first);
Hmmm... wouldn't this compute Bloom filter second time? get_bloom_filter() does work unconditionally.
Wouldn't
+ struct bloom_filter *filter = bloom_filter_slab_at(&bloom_filters, *first);
be enough?
Or make get_bloom_filter() use *_peek() to check if Bloom filter for given commit was already computed, and only if it returns NULL do the work.
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1055
Quoted 1 line
commit-graph.c +1
-0+hashwrite (f, filter->data, filter->len *sizeof (uint64_t ));
Might need display_progress() before hashwrote().
Quoted 16 lines
commit-graph.c +5
-0+ first++; + } +} +static int oid_compare (const void *_a,const void *_b) {const struct object_id *a = (const struct object_id *)_a;@@ -1388,6 +1449,7 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;struct object_id file_hash; +struct bloom_filter_settings bloom_settings =DEFAULT_BLOOM_FILTER_SETTINGS ;if (ctx->split) {struct strbuf tmp_file =STRBUF_INIT ;
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1502
Quoted 9 lines
commit-graph.c +6
-0@@ -1432,6 +1494,12 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx) chunk_ids[num_chunks] =GRAPH_CHUNKID_EXTRAEDGES ; num_chunks++; } +if (ctx->bloom) { + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMINDEXES ; + num_chunks++; + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMDATA ; + num_chunks++; + }
Looks all right.
Quoted 4 lines
commit-graph.c +0
-0if (ctx->num_commit_graphs_after >1 ) { chunk_ids[num_chunks] =GRAPH_CHUNKID_BASE ; num_chunks++;
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1527
Quoted 10 lines
commit-graph.c +7
-0@@ -1450,6 +1518,13 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)4 * ctx->num_extra_edges; num_chunks++; } +if (ctx->bloom) { + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] +sizeof (uint32_t ) * ctx->commits.nr; + num_chunks++; + + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] +sizeof (uint32_t ) *3 + ctx->total_bloom_filter_size; + num_chunks++; + }
Better wrap those long lines, like above:
+ if (ctx->bloom) {
+ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] +
+ sizeof(uint32_t) * ctx->commits.nr;
+ num_chunks++;
+
+ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] +
+ sizeof(uint32_t) * 3 + ctx->total_bloom_filter_size;
+ num_chunks++;
+ }commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1568
Quoted 11 lines
commit-graph.c +4
-0if (ctx->num_commit_graphs_after >1 ) { chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] + hashsz * (ctx->num_commit_graphs_after -1 );@@ -1487,6 +1562,10 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)write_graph_chunk_data (f, hashsz, ctx);if (ctx->num_extra_edges)write_graph_chunk_extra_edges (f, ctx); +if (ctx->bloom) { +write_graph_chunk_bloom_indexes (f, ctx); +write_graph_chunk_bloom_data (f, ctx, &bloom_settings); + }
All right.
Quoted 16 lines
commit-graph.c +0
-0if (ctx->num_commit_graphs_after >1 &&write_graph_chunk_base (f, ctx)) {return -1 ;commit-graph.h +1
-0@@ -10,6 +10,7 @@#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"struct commit ; +struct bloom_filter_settings ;char *get_commit_graph_filename (const char *obj_dir);int open_commit_graph (const char *graph_file,int *fd,struct stat *st);
commit-graph.h struct commit_graph { · line 65
Quoted 7 lines
commit-graph.h +4
-0@@ -58,6 +59,10 @@ struct commit_graph {const unsigned char *chunk_commit_data;const unsigned char *chunk_extra_edges;const unsigned char *chunk_base_graphs; +const unsigned char *chunk_bloom_indexes; +const unsigned char *chunk_bloom_data; + +struct bloom_filter_settings *settings;
Should this be part of struct commit_graph? Shouldn't we free() this data, or is it a pointer into xmmap-ped file... no it isn't -- we xalloc() it, so we should free() it.
I think it should be done in 'cleanup:' section of write_commit_graph(), but I am not entirely sure.
commit-graph.h struct commit_graph { · line 68
Quoted 3 lines
commit-graph.h +0
-0};struct commit_graph *load_commit_graph_one_fd_st (int fd,struct stat *st);
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH 5/9] commit-graph: write changed path bloom filters to commit-graph file.
Quoted 8 lines · Jakub Narebski
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 305
Quoted 3 lines · Garima Singh via GitGitGadget
commit-graph.c +3
-0+ +if (hash_version !=1 ) +break ;What does it mean for Git? Behave as if there were no Bloom filter data?
Yes. We choose to use Bloom filters best effort, and in such cases, we will just fall back to the original code path.
Quoted 28 lines
Quoted 16 lines
commit-graph.c +0
-0if (ctx->num_commit_graphs_after >1 &&write_graph_chunk_base (f, ctx)) {return -1 ;commit-graph.h +1
-0@@ -10,6 +10,7 @@#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"struct commit ; +struct bloom_filter_settings ;char *get_commit_graph_filename (const char *obj_dir);int open_commit_graph (const char *graph_file,int *fd,struct stat *st);commit-graph.h struct commit_graph { · line 65
Quoted 7 lines
commit-graph.h +4
-0@@ -58,6 +59,10 @@ struct commit_graph {const unsigned char *chunk_commit_data;const unsigned char *chunk_extra_edges;const unsigned char *chunk_base_graphs; +const unsigned char *chunk_bloom_indexes; +const unsigned char *chunk_bloom_data; + +struct bloom_filter_settings *settings;Should this be part of
struct commit_graph? Shouldn't wefree()this data, or is it a pointer into xmmap-ped file... no it isn't -- wexalloc()it, so we shouldfree()it.
Quoted 3 lines
I think it should be done in 'cleanup:' section of
write_commit_graph(), but I am not entirely sure.
Thanks for calling this out! This is definitely a bug in how commit-graph.c frees up the graph. The right way to free the graph would be to call free_commit_graph() instead of free(graph) like many places in that file.
Cleaning up this entire pattern would be orthogonal to this series, so I will follow up with a separate series that cleans it up overall.
For now, I will free up bloom_filter_settings in free_commit_graph().
Cheers!
Garima Singh
PATCH 6/9 commit-graph: test commit-graph write --changed-paths
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Add tests for the --changed-paths feature when writing commit-graphs.
RFC Notes:
I plan to split this test across some of the earlier commits as appropriate.
--- t/helper/test-read-graph.c | 4 + t/t5325-commit-graph-bloom.sh | 255 ++++++++++++++++++++++++++++++++++ 2 files changed, 259 insertions(+) create mode 100755 t/t5325-commit-graph-bloom.sh
t/helper/test-read-graph.c +4 -0
@@ -45,6 +45,10 @@ int cmd__read_graph(int argc, const char **argv)printf (" commit_metadata" );if (graph->chunk_extra_edges)printf (" extra_edges" ); +if (graph->chunk_bloom_indexes) +printf (" bloom_indexes" ); +if (graph->chunk_bloom_data) +printf (" bloom_data" );printf ("\n" );UNLEAK (graph);
t/t5325-commit-graph-bloom.sh new file +255 -0
255 lines not on this page · raw message
Signature · 1 line
gitgitgadget
Re: [PATCH 6/9] commit-graph: test commit-graph write --changed-paths
Quoted 4 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add tests for the --changed-paths feature when writing commit-graphs.
It doesn't look however as if this test is actually testing the _Bloom filter_ functionality itself -- because this test looks like copy'n'paste of t/t5324-split-commit-graph.sh, just with --changed-paths added to the git commit-graph write invocation, and added checking via enhanced test-tool that there are Bloom filter chunks ("bloom_indexes" and "bloom_data").
Please correct me if I am wrong, but this looks like a simple sanity check for me.
Quoted 4 lines
RFC Notes:
I plan to split this test across some of the earlier commits as appropriate.
About adding tests to earlier commits in this series:
1. Testing Bloom filter functionality:
- creating Bloom filter and adding elements to it
- testing Bloom filter functionality
- for element in set the answer is "maybe"
- for element not in set the answer is "no" or "maybe"
- automatic resizing works (6 and 7 elements)
- it works for different number of hash functions, and different number of bits per element (maybe?)
2. Testing Bloom filter for commit changeset:
- it works for commit with no changes
- it works for merge commit with no changes to first parent
(`git merge --strategy=ours`)
- with number of changes that require filter size change
- with maximal number of changes, one changed file less, one changed file more
- that for file deeper in hierarchy, path/to/file, all of changed directories (path/to/ and path/) are also added
3. Test writing and reading commit-graph with Bloom filters
- that after writing Bloom filters with --changed-paths the data is present in commit-graph files
- it works correctly with split commit-graph
- it doesn't crash if confronted with unknown settings:
hash version different than 1, different number of hash functions, different number of bits per element
4. Bloom filter specific git commit-graph verify parts
- fail if Bloom filter chunks appear multiple times
- fail if only one of BIDX or BDAT chunks are present
- fail if BIDX is not monotonic, that is if size of Bloom filter for a commit is negative
- fail if BDAT size does not agree with BIDX,
being either too small, or too large
- check if values of number of hash functions
and number of bits per element added are sane
5. Using Bloom filters to speed up Git operations
- test that with and without Bloom filters (or commit-graph) the following operations work the same:
- git log -- <path/to/file>
- git log -- <path/to/directory>
- git log -- '*.c' # or other glob pattern
- git log -- <file1> <file2>
- git log --follow <file>
- maybe also git log --full-history -- <file>
- if possible, add performance tests, see t/perf
Quoted 14 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- t/helper/test-read-graph.c | 4 + t/t5325-commit-graph-bloom.sh | 255 ++++++++++++++++++++++++++++++++++ 2 files changed, 259 insertions(+) create mode 100755 t/t5325-commit-graph-bloom.sht/helper/test-read-graph.c +0
-0
t/helper/test-read-graph.c int cmd__read_graph(int argc, const char **argv) · line 51
Quoted 7 lines
t/helper/test-read-graph.c +4
-0@@ -45,6 +45,10 @@ int cmd__read_graph(int argc, const char **argv)printf (" commit_metadata" );if (graph->chunk_extra_edges)printf (" extra_edges" ); +if (graph->chunk_bloom_indexes) +printf (" bloom_indexes" ); +if (graph->chunk_bloom_data) +printf (" bloom_data" );
All right, though it is very basic information.
Quoted 14 lines
t/helper/test-read-graph.c +0
-0printf ("\n" );UNLEAK (graph);t/t5325-commit-graph-bloom.sh new file +5
-0@@ -0,0 +1,255 @@ +#!/bin/sh + +test_description='commit graph with bloom filters' +. ./test-lib.sh +
t/t5325-commit-graph-bloom.sh line 15
Quoted 10 lines
t/t5325-commit-graph-bloom.sh new file +10
-0+test_expect_success 'setup repo' ' + git init && + git config core.commitGraph true && + git config gc.writeCommitGraph false && + infodir=".git/objects/info" && + graphdir="$infodir/commit-graphs" && + test_oid_init +' + +graph_read_expect() {
Style: space between function name and parentheses, i.e.
+graph_read_expect () {t/t5325-commit-graph-bloom.sh line 16
Quoted 1 line
t/t5325-commit-graph-bloom.sh new file +1
-0+ OPTIONAL=""
Not used anywhere.
t/t5325-commit-graph-bloom.sh line 18
Quoted 2 lines
t/t5325-commit-graph-bloom.sh new file +2
-0+ NUM_CHUNKS=5 + if test ! -z $2
It might be good idea to add names to those parameters by setting some local variables to $1 and $2; or, alternatively add comment describing this function.
t/t5325-commit-graph-bloom.sh line 30
Quoted 12 lines
t/t5325-commit-graph-bloom.sh new file +12
-0+ then + OPTIONAL=" $2" + NUM_CHUNKS=$((NUM_CHUNKS + $(echo "$2" | wc -w))) + fi + cat >expect <<- EOF + header: 43475048 1 1 $NUM_CHUNKS 0 + num_commits: $1 + chunks: oid_fanout oid_lookup commit_metadata bloom_indexes bloom_data + EOF + test-tool read-graph >output && + test_cmp expect output +}
No comments below this point...
Best,
Jakub Narębski
Quoted 225 lines
t/t5325-commit-graph-bloom.sh new file +225
-0+ +test_expect_success 'create commits and write commit-graph' ' + for i in $(test_seq 3) + do + test_commit $i && + git branch commits/$i || return 1 + done && + git commit-graph write --reachable --changed-paths && + test_path_is_file $infodir/commit-graph && + graph_read_expect 3 +' + +graph_git_two_modes() { + git -c core.commitGraph=true $1 >output + git -c core.commitGraph=false $1 >expect + test_cmp expect output +} + +graph_git_behavior() { + MSG=$1 + BRANCH=$2 + COMPARE=$3 + test_expect_success "check normal git operations: $MSG" ' + graph_git_two_modes "log --oneline $BRANCH" && + graph_git_two_modes "log --topo-order $BRANCH" && + graph_git_two_modes "log --graph $COMPARE..$BRANCH" && + graph_git_two_modes "branch -vv" && + graph_git_two_modes "merge-base -a $BRANCH $COMPARE" + ' +} + +graph_git_behavior 'graph exists' commits/3 commits/1 + +verify_chain_files_exist() { + for hash in $(cat $1/commit-graph-chain) + do + test_path_is_file $1/graph-$hash.graph || return 1 + done +} + +test_expect_success 'add more commits, and write a new base graph' ' + git reset --hard commits/1 && + for i in $(test_seq 4 5) + do + test_commit $i && + git branch commits/$i || return 1 + done && + git reset --hard commits/2 && + for i in $(test_seq 6 10) + do + test_commit $i && + git branch commits/$i || return 1 + done && + git reset --hard commits/2 && + git merge commits/4 && + git branch merge/1 && + git reset --hard commits/4 && + git merge commits/6 && + git branch merge/2 && + git commit-graph write --reachable --changed-paths && + graph_read_expect 12 +' + +test_expect_success 'fork and fail to base a chain on a commit-graph file' ' + test_when_finished rm -rf fork && + git clone . fork && + ( + cd fork && + rm .git/objects/info/commit-graph && + echo "$(pwd)/../.git/objects" >.git/objects/info/alternates && + test_commit new-commit && + git commit-graph write --reachable --split --changed-paths && + test_path_is_file $graphdir/commit-graph-chain && + test_line_count = 1 $graphdir/commit-graph-chain && + verify_chain_files_exist $graphdir + ) +' + +test_expect_success 'add three more commits, write a tip graph' ' + git reset --hard commits/3 && + git merge merge/1 && + git merge commits/5 && + git merge merge/2 && + git branch merge/3 && + git commit-graph write --reachable --split --changed-paths && + test_path_is_missing $infodir/commit-graph && + test_path_is_file $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 2 graph-files && + verify_chain_files_exist $graphdir +' + +graph_git_behavior 'split commit-graph: merge 3 vs 2' merge/3 merge/2 + +test_expect_success 'add one commit, write a tip graph' ' + test_commit 11 && + git branch commits/11 && + git commit-graph write --reachable --split --changed-paths && + test_path_is_missing $infodir/commit-graph && + test_path_is_file $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 3 graph-files && + verify_chain_files_exist $graphdir +' + +graph_git_behavior 'three-layer commit-graph: commit 11 vs 6' commits/11 commits/6 + +test_expect_success 'add one commit, write a merged graph' ' + test_commit 12 && + git branch commits/12 && + git commit-graph write --reachable --split --changed-paths && + test_path_is_file $graphdir/commit-graph-chain && + test_line_count = 2 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 2 graph-files && + verify_chain_files_exist $graphdir +' + +graph_git_behavior 'merged commit-graph: commit 12 vs 6' commits/12 commits/6 + +test_expect_success 'create fork and chain across alternate' ' + git clone . fork && + ( + cd fork && + git config core.commitGraph true && + rm -rf $graphdir && + echo "$(pwd)/../.git/objects" >.git/objects/info/alternates && + test_commit 13 && + git branch commits/13 && + git commit-graph write --reachable --split --changed-paths && + test_path_is_file $graphdir/commit-graph-chain && + test_line_count = 3 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 1 graph-files && + git -c core.commitGraph=true rev-list HEAD >expect && + git -c core.commitGraph=false rev-list HEAD >actual && + test_cmp expect actual && + test_commit 14 && + git commit-graph write --reachable --split --changed-paths --object-dir=.git/objects/ && + test_line_count = 3 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 1 graph-files + ) +' + +graph_git_behavior 'alternate: commit 13 vs 6' commits/13 commits/6 + +test_expect_success 'test merge stragety constants' ' + git clone . merge-2 && + ( + cd merge-2 && + git config core.commitGraph true && + test_line_count = 2 $graphdir/commit-graph-chain && + test_commit 14 && + git commit-graph write --reachable --split --changed-paths --size-multiple=2 && + test_line_count = 3 $graphdir/commit-graph-chain + + ) && + git clone . merge-10 && + ( + cd merge-10 && + git config core.commitGraph true && + test_line_count = 2 $graphdir/commit-graph-chain && + test_commit 14 && + git commit-graph write --reachable --split --changed-paths --size-multiple=10 && + test_line_count = 1 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 1 graph-files + ) && + git clone . merge-10-expire && + ( + cd merge-10-expire && + git config core.commitGraph true && + test_line_count = 2 $graphdir/commit-graph-chain && + test_commit 15 && + git commit-graph write --reachable --split --changed-paths --size-multiple=10 --expire-time=1980-01-01 && + test_line_count = 1 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 3 graph-files + ) && + git clone --no-hardlinks . max-commits && + ( + cd max-commits && + git config core.commitGraph true && + test_line_count = 2 $graphdir/commit-graph-chain && + test_commit 16 && + test_commit 17 && + git commit-graph write --reachable --split --changed-paths --max-commits=1 && + test_line_count = 1 $graphdir/commit-graph-chain && + ls $graphdir/graph-*.graph >graph-files && + test_line_count = 1 graph-files + ) +' + +test_expect_success 'remove commit-graph-chain file after flattening' ' + git clone . flatten && + ( + cd flatten && + test_line_count = 2 $graphdir/commit-graph-chain && + git commit-graph write --reachable && + test_path_is_missing $graphdir/commit-graph-chain && + ls $graphdir >graph-files && + test_must_be_empty graph-files + ) +' + +graph_git_behavior 'graph exists' merge/octopus commits/12 + +test_expect_success 'split across alternate where alternate is not split' ' + git commit-graph write --reachable && + test_path_is_file .git/objects/info/commit-graph && + cp .git/objects/info/commit-graph . && + git clone --no-hardlinks . alt-split && + ( + cd alt-split && + rm -f .git/objects/info/commit-graph && + echo "$(pwd)"/../.git/objects >.git/objects/info/alternates && + test_commit 18 && + git commit-graph write --reachable --split --changed-paths && + test_line_count = 1 $graphdir/commit-graph-chain + ) && + test_cmp commit-graph .git/objects/info/commit-graph +' + +test_done
PATCH 7/9 commit-graph: reuse existing bloom filters during write.
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Read previously computed bloom filters from the commit-graph file if possible to avoid recomputing during commit-graph write.
Reading from the commit-graph is based on the format in which bloom filters are written in the commit graph file. See method fill_filter_from_graph in bloom.c
For reading the bloom filter for commit at lexicographic position i:
1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter of commit i+1 (called the next_index in the code)
2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for filter of commit i (called the prev_index in the code)
For i = 0, prev_index will be 0. The first lexicographic commit's filter will start at BDAT.
3. The length of the filter will be next_index - prev_index, because BIDX[i] gives the cumulative 8-byte words including the ith commit's filter.
We toggle whether bloom filters should be recomputed based on the compute_if_null flag.
--- bloom.c | 40 ++++++++++++++++++++++++++++++++++++++-- bloom.h | 3 ++- commit-graph.c | 6 +++--- 3 files changed, 43 insertions(+), 6 deletions(-)
bloom.c +38 -2
@@ -1,5 +1,7 @@#include "git-compat-util.h" #include "bloom.h" +#include "commit.h" +#include "commit-slab.h" #include "commit-graph.h" #include "object-store.h" #include "diff.h"
@@ -119,13 +121,35 @@ static void add_key_to_filter(struct bloom_key *key, } } +static void fill_filter_from_graph (struct commit_graph *g, +struct bloom_filter *filter, +struct commit *c) +{ +uint32_t lex_pos, prev_index, next_index; + +while (c->graph_pos < g->num_commits_in_base) + g = g->base_graph; + + lex_pos = c->graph_pos - g->num_commits_in_base; + + next_index =get_be32 (g->chunk_bloom_indexes +4 * lex_pos); +if (lex_pos) + prev_index =get_be32 (g->chunk_bloom_indexes +4 * (lex_pos -1 )); +else + prev_index =0 ; + + filter->len = next_index - prev_index; + filter->data = (uint64_t *)(g->chunk_bloom_data +8 * prev_index +12 ); +} +void load_bloom_filters (void ) {init_bloom_filter_slab (&bloom_filters); }struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c) +struct commit *c, +int compute_if_null) {struct bloom_filter *filter;struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;
@@ -134,6 +158,18 @@ struct bloom_filter *get_bloom_filter(struct repository *r,const char *revs_argv[] = {NULL ,"HEAD" ,NULL }; filter =bloom_filter_slab_at (&bloom_filters, c); + +if (!filter->data) { +load_commit_graph_info (r, c); +if (c->graph_pos !=COMMIT_NOT_FROM_GRAPH && r->objects->commit_graph->chunk_bloom_indexes) { +fill_filter_from_graph (r->objects->commit_graph, filter, c); +return filter; + } + } + +if (filter->data || !compute_if_null) +return filter; +init_revisions (&revs,NULL ); revs.diffopt.flags.recursive =1 ;
@@ -198,4 +234,4 @@ struct bloom_filter *get_bloom_filter(struct repository *r,DIFF_QUEUE_CLEAR (&diff_queued_diff);return filter; -} +}
bloom.h +2 -1
@@ -36,7 +36,8 @@ struct bloom_key {void load_bloom_filters (void );struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c); +struct commit *c, +int compute_if_null); void fill_bloom_key(const char *data, int len,
commit-graph.c +3 -3
@@ -1032,7 +1032,7 @@ static void write_graph_chunk_bloom_indexes(struct hashfile *f,uint32_t cur_pos =0 ;while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 ); cur_pos += filter->len;hashwrite_be32 (f, cur_pos); list++;
@@ -1051,7 +1051,7 @@ static void write_graph_chunk_bloom_data(struct hashfile *f,hashwrite_be32 (f, settings->bits_per_entry);while (first < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *first); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *first,0 );hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); first++; }
@@ -1218,7 +1218,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = ctx->commits.list[i]; -struct bloom_filter *filter =get_bloom_filter (ctx->r, c); +struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); }
Signature · 1 line
gitgitgadget
Re: [PATCH 7/9] commit-graph: reuse existing bloom filters during write.
Quoted 2 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Overly long lines in the commit message.
Quoted 2 lines
Read previously computed bloom filters from the commit-graph file if possible to avoid recomputing during commit-graph write.
Hmmm. This fixes (somewhat) the problem that I have noticed in previous patch that the Bloom filter was computed at least twice, once for BIDX chunk, once fo BDAT chunk.
I think the order should be:
- use Bloom filter on slab, if present
- fill it from commit graph, if saved there
- if needed, compute it from scratch (expensive operation!)
If I understand it correctly, it now does it... though possibly with unnecessary memory allocation if commit-graph file does not include Bloomm filters data, and (re)computing is not requested (see later).
But I might be wrong here.
Quoted 3 lines
Reading from the commit-graph is based on the format in which bloom filters are written in the commit graph file. See method
fill_filter_from_graphinbloom.c
This description reads a bit strange; it looks like it states a truism (we read in the format we wrote). It think it should be rephrased in different way for better readability.
Quoted 2 lines
For reading the bloom filter for commit at lexicographic position i:
I think it would better read as:
To read Bloom filter for a given commit with lexicographic position 'i' we need to:
Quoted 2 lines
1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter of commit i+1 (called the
next_indexin the code)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
\- I think would be not needed with better var nameI would also add that it gives the position [one past] the end of Bloom filter data for i-th commit.
Quoted 3 lines
2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for filter of commit i (called the
prev_indexin the code)
Minor nitpick: Full stops are missing.
Why it is called prev_index and next_index, while it is either curr_index and next_index or prev_index and curr_index, or maybe even better beg_index and end_index?
Quoted 2 lines
For i = 0,
prev_indexwill be 0. The first lexicographic commit's filter will start at BDAT.
I would state it
For first commit, with i = 0, Bloom filter data starts at the beginning, just past the header in BDAT chunk.
Quoted 6 lines
3. The length of the filter will be
next_index-prev_index, because BIDX[i] gives the cumulative 8-byte words including the ith commit's filter.We toggle whether bloom filters should be recomputed based on the
compute_if_nullflag.
All right.
Quoted 26 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- bloom.c | 40 ++++++++++++++++++++++++++++++++++++++-- bloom.h | 3 ++- commit-graph.c | 6 +++--- 3 files changed, 43 insertions(+), 6 deletions(-)bloom.c +3
-0@@ -1,5 +1,7 @@#include "git-compat-util.h" #include "bloom.h" +#include "commit.h" +#include "commit-slab.h" #include "commit-graph.h" #include "object-store.h" #include "diff.h" @@ -119,13 +121,35 @@ static void add_key_to_filter(struct bloom_key *key, } } +static void fill_filter_from_graph(struct commit_graph *g,
bloom.c static void add_key_to_filter(struct bloom_key *key, · line 134
Quoted 10 lines
bloom.c +9
-0+struct bloom_filter *filter, + struct commit *c) +{ + uint32_t lex_pos, prev_index, next_index; + +while (c->graph_pos < g->num_commits_in_base) + g = g->base_graph; + + lex_pos = c->graph_pos - g->num_commits_in_base;
This part shares common code with load_oid_from_graph(), only without some of error checking; perhaps it might be good to extract it into a separate helper function, e.g. lex_index(&g, c->graph_pos).
Minor nitpick about the consistency of function names: why load_oid_from_graph(), but fill_filter_from_graph(), and not load_filter_from_graph() / load_bloom_from_graph()?
bloom.c static void add_key_to_filter(struct bloom_key *key, · line 136
Quoted 3 lines
bloom.c +3
-0+ + next_index =get_be32 (g->chunk_bloom_indexes +4 * lex_pos); +if (lex_pos)
I think using
+ if (lex_pos > 0)
or
+ if (lex_pos >= 0)
might be easier to reason about.
bloom.c static void add_key_to_filter(struct bloom_key *key, · line 141
Quoted 5 lines
bloom.c +5
-0+ prev_index =get_be32 (g->chunk_bloom_indexes +4 * (lex_pos -1 )); + else + prev_index =0 ; + + filter->len = next_index - prev_index;
The above command reads a bit strange: next - prev? not next - curr, or curr - prev? Wouldn't it be better to name it begin_index and end_index, or beg_index and end_index for brevity?
bloom.c static void add_key_to_filter(struct bloom_key *key, · line 142
Quoted 1 line
bloom.c +1
-0+ filter->data = (uint64_t *)(g->chunk_bloom_data +8 * prev_index +12 );
Please do not use magic constants; use instead something like:
+ filter->data = (uint64_t *)(g->chunk_bloom_data +
+ sizeof(uint64_t) * prev_index +
+ BLOOMDATA_CHUNK_HEADER_SIZE);
Perhaps using 3*sizeof(unit32_t) instead of magic value 12 would be enough; but having symbolic name for BDAT chunk header size is better, I think.
bloom.c static void add_key_to_filter(struct bloom_key *key, · line 152
Quoted 11 lines
bloom.c +4
-1+} +void load_bloom_filters (void ) {init_bloom_filter_slab (&bloom_filters); }struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c) +struct commit *c, +int compute_if_null)
I'm not sure about compute_if_null name...
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 160
Quoted 7 lines
bloom.c +0
-0{struct bloom_filter *filter;bloom.c +0
-0struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;@@ -134,6 +158,18 @@ struct bloom_filter *get_bloom_filter(struct repository *r,const char *revs_argv[] = {NULL ,"HEAD" ,NULL }; filter =bloom_filter_slab_at (&bloom_filters, c);
Note that the documentation for slab_at(slab, commit) is documented in commit-slab.h as
* This function locates the data associated with the given commit in
* the indegree slab, and returns the pointer to it. The location to
* store the data is allocated as necessary.
~~~~~~~~~~~~~~~~~~~~~~Should we worry about this possibly unnecessary allocation (if there is no Bloom filter chunk in the commit-graph, and we are not recomputing it)?
There is slab_peek(slab_commit) with the following properties:
* This function is similar to indegree_at(), but it will return NULL
* until a call to indegree_at() was made for the commit.
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 162
Quoted 2 lines
bloom.c +2
-0+ +if (!filter->data) {
What does the Bloom filter for a commit with no changes looks like? What about for a commit with more than 512 changes? Do, in either of those cases, filter->len is 0? If yes, what about filter->data?
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 164
Quoted 2 lines
bloom.c +2
-0+load_commit_graph_info (r, c); +if (c->graph_pos !=COMMIT_NOT_FROM_GRAPH && r->objects->commit_graph->chunk_bloom_indexes) {
Please wrap overly long lines (109 characters seems too long; the CodingGuidelines states:
- We try to keep to at most 80 characters per line.
+ if (c->graph_pos != COMMIT_NOT_FROM_GRAPH &&
+ r->objects->commit_graph->chunk_bloom_indexes) {You seem to assume here that in the chain of commit-graph files either all of them would have Bloom filters, or all of them would be missing Bloom filters. Isn't it however possible for only some of the commit-graph files in chain to include Bloom filter data chunks?
In such case, the top commit-graph file may have BIDX chunk (bloom_indexes), but the commit-graph with the commit 'c' might not have it. Or the top commit-graph file may be missing BIDX chunk, so Git would recompute it even if the commit-graph file for commit 'c' includes it.
If such situation is forbidden, how the restriction is managed?
Note: in any case, this needs to be tested!
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 168
Quoted 4 lines
bloom.c +4
-0+fill_filter_from_graph (r->objects->commit_graph, filter, c); +return filter; + } + }
All right, if it is not in slab, we try to read if from the commit graph. Looks all right.
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 171
Quoted 3 lines
bloom.c +3
-0+ +if (filter->data || !compute_if_null) +return filter;
^^^^^^^^
|
\- one tab too manyIf we have found existing filter (on slab or in the commit-graph), or if we won't be recomputing it, return it. O.K.
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 237
Quoted 11 lines
bloom.c +2
-1+init_revisions (&revs,NULL ); revs.diffopt.flags.recursive =1 ;@@ -198,4 +234,4 @@ struct bloom_filter *get_bloom_filter(struct repository *r,DIFF_QUEUE_CLEAR (&diff_queued_diff);return filter; -} +}
Accidental change.
bloom.h struct bloom_key { · line 41
Quoted 12 lines
bloom.h +2
-1@@ -36,7 +36,8 @@ struct bloom_key {void load_bloom_filters (void );struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c); +struct commit *c, +int compute_if_null);
All right, this is just update of the function signature.
Quoted 16 lines
bloom.h +0
-0void fill_bloom_key(const char *data, int len,commit-graph.c +1
-1@@ -1032,7 +1032,7 @@ static void write_graph_chunk_bloom_indexes(struct hashfile *f,uint32_t cur_pos =0 ;while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 ); cur_pos += filter->len;hashwrite_be32 (f, cur_pos); list++;
commit-graph.c static void write_graph_chunk_bloom_data(struct hashfile *f, · line 1057
Quoted 8 lines
commit-graph.c +1
-1@@ -1051,7 +1051,7 @@ static void write_graph_chunk_bloom_data(struct hashfile *f,hashwrite_be32 (f, settings->bits_per_entry);while (first < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *first); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *first,0 );hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); first++; }
O.K., so those two do not compute Bloom filters, but they are called from write_commit_graph_file(), which in turn is called in write_commit_graph() *after* running compute_bloom_filters().
Looks good to me, then.
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1224
Quoted 9 lines
commit-graph.c +1
-1@@ -1218,7 +1218,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = ctx->commits.list[i]; -struct bloom_filter *filter =get_bloom_filter (ctx->r, c); +struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); }
All right, so compute_bloom_filters() ensures that it is actually computed (if needed).
Looks good to me.
Regards,
Signature · 1 line
Jakub Narębski
PATCH 8/9 revision.c: use bloom filters to speed up path based revision walks
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
If bloom filters have been written to the commit-graph file, revision walk will use them to speed up revision walks for a particular path.
Note: The current implementation does this in the case of single pathspec case only.
We load the bloom filters during the prepare_revision_walk step when dealing with a single pathspec. While comparing trees in rev_compare_trees(), if the bloom filter says that the file is not different between the two trees, we don't need to compute the expensive diff. This is where we get our performance gains.
Performance Gains:
We tested the performance of git log --path on the git repo, the linux and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos:
we observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree:
we observed 10x to 20x speed ups, with some paths going up to 28 times faster.
RFC Notes:
I plan to collect the folloowing statistics around this usage of bloom filters and trace them out using trace2.
- number of bloom filter queries,
- number of "No" responses (file hasn't changed)
- number of "Maybe" responses (file may have changed)
- number of "Commit not parsed" cases (commit had too many changes to have a bloom filter written out, currently our limit is 512 diffs)
--- bloom.c | 20 ++++++++++++ bloom.h | 4 +++ revision.c | 67 +++++++++++++++++++++++++++++++++++++-- revision.h | 5 +++ t/t4216-log-bloom.sh | 74 ++++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 168 insertions(+), 2 deletions(-) create mode 100755 t/t4216-log-bloom.sh
bloom.c +20 -0
@@ -235,3 +235,23 @@ struct bloom_filter *get_bloom_filter(struct repository *r,return filter; } + +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings) +{ +int i; +uint64_t mod = filter->len *BITS_PER_BLOCK ; + +if (!mod) +return 1 ; + +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_BLOCK ; +if (!(filter->data[block_pos] &get_bitmask (hash_mod))) +return 0 ; + } + +return 1 ; +}
bloom.h +4 -0
@@ -44,4 +44,8 @@ void fill_bloom_key(const char *data,struct bloom_key *key, struct bloom_filter_settings *settings); +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings); +#endif
revision.c +65 -2
107 lines not on this page · raw message
revision.h +5 -0
@@ -56,6 +56,8 @@ struct repository;struct rev_info ;struct string_list ;struct saved_parents ; +struct bloom_key ; +struct bloom_filter_settings ; define_shared_commit_slab(revision_sources, char *);struct rev_cmdline_info {
@@ -291,6 +293,9 @@ struct rev_info {struct revision_sources *sources;struct topo_walk_info *topo_walk_info; + +struct bloom_key *bloom_key; +struct bloom_filter_settings *bloom_filter_settings; };int ref_excluded (struct string_list *,const char *path);
t/t4216-log-bloom.sh new file +74 -0
74 lines not on this page · raw message
Signature · 1 line
gitgitgadget
Re: [PATCH 8/9] revision.c: use bloom filters to speed up path based revision walks
Quoted 4 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
If bloom filters have been written to the commit-graph file, revision walk will use them to speed up revision walks for a particular path.
I'd propose the following change, to make structure of the above sentence simpler:
Revision walk will now use Bloom filters for commits to speed up revision walks for a particular path (for computing history of a path), if they are present in the commit-graph file.
Quoted 4 lines
Note: The current implementation does this in the case of single pathspec case only.
We load the bloom filters during the
prepare_revision_walkstep when dealing
I think it would flow better with the following change:
s/when dealing/, but only when dealing/
Quoted 4 lines
with a single pathspec. While comparing trees in
rev_compare_trees(), if the bloom filter says that the file is not different between the two trees, we don't need to compute the expensive diff. This is where we get our performance gains.
Maybe we should also add:
The other answer we can get from the Bloom filter is "maybe".
Quoted 4 lines
Performance Gains:
We tested the performance ofgit log --pathon the git repo, the linux and some internal large repos, with a variety of paths of varying depths.
I think you meant git log <path>, not git log --path.
Quoted 3 lines
On the git and linux repos:
we observed a 2x to 5x speed up.
It would be good, I think, to have some specific numbers: starting from this version, for this path, with and without Bloom filters it takes so long (and the improvement in %).
While at it, it might be good idea to provide _costs_: how much additional space on disk Bloom filters take for those specific examples, and how much extra time (and memory) it takes to compute Bloom filters.
With actual specific numbers we can estimate when it would start to be worth it to create Bloom filter data...
Quoted 4 lines
On a large internal repo with files seated 6-10 levels deep in the tree:
we observed 10x to 20x speed ups, with some paths going up to 28 times faster.
It would be nice to see specific numbers, if showing pathnames is possible. In any case it would be good to have more information: what paths give 10x, what give 20x, and what kinds give 28x speedup (what is path depth, how many objects, etc.).
Quoted 9 lines
RFC Notes:
I plan to collect the folloowing statistics around this usage of bloom filters and trace them out using trace2.
- number of bloom filter queries,
- number of "No" responses (file hasn't changed)
- number of "Maybe" responses (file may have changed)
- number of "Commit not parsed" cases (commit had too many changes to have a bloom filter written out, currently our limit is 512 diffs)
Perhaps also:
- histogram of bloom filter sizes in 64-bit blocks (which is rough histogram of number of changes per commit)
Though I think all those statistics are a bit specific to the repository, and how you use Git.
Quoted 22 lines
Helped-by Derrick Stolee <[email protected]Helped-by SZEDER Gábor <[email protected]>Helped-by Jonathan Tan <[email protected]>Signed-off-by Garima Singh <[email protected]>--- bloom.c | 20 ++++++++++++ bloom.h | 4 +++ revision.c | 67 +++++++++++++++++++++++++++++++++++++-- revision.h | 5 +++ t/t4216-log-bloom.sh | 74 ++++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 168 insertions(+), 2 deletions(-) create mode 100755 t/t4216-log-bloom.shbloom.c +0
-0@@ -235,3 +235,23 @@ struct bloom_filter *get_bloom_filter(struct repository *r,return filter; }
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 247
Quoted 10 lines
bloom.c +10
-0+ +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings) +{ +int i; +uint64_t mod = filter->len *BITS_PER_BLOCK ; + +if (!mod) +return 1 ;
Ah, so filter->len equal to zero denotes too many changes for a Bloom filter, and this conditional is a short-circuit test: always return "maybe".
I wonder if we should explicitly check for filter->len = 1 and filter->data[0] = 0, which should be empty Bloom filter -- for commit with no changes with respect to first parent, and short-circuit returning 0 (no file would ever belong).
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 251
Quoted 4 lines
bloom.c +4
-0+ +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_BLOCK ;
I have seen this code before... ;-) The add_key_to_filter() function includes almost identical code, but I am not sure if it is feasible to eliminate this (slight) code duplication. Probably not.
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 253
Quoted 2 lines
bloom.c +2
-0+if (!(filter->data[block_pos] &get_bitmask (hash_mod))) +return 0 ;
All right, if at least one hash function does not match, return "no"...
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 256
Quoted 3 lines
bloom.c +3
-0+ } + +return 1 ;
... else return "maybe".
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 257
Quoted 1 line
bloom.c +1
-0+}
I am wondering however if this code should not be moved earlier in the series, so that commit 2/9 in series actually adds fully functional [semi-generic] Bloom filter implementation.
Quoted 26 lines
bloom.h +4
-0@@ -44,4 +44,8 @@ void fill_bloom_key(const char *data,struct bloom_key *key, struct bloom_filter_settings *settings); +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings); +#endif revision.c +1
-0@@ -29,6 +29,7 @@#include "prio-queue.h" #include "hashmap.h" #include "utf8.h" +#include "bloom.h" volatile show_early_output_fn_t show_early_output;
revision.c static void file_change(struct diff_options *options, · line 631
Quoted 7 lines
revision.c +4
-0@@ -624,11 +625,34 @@ static void file_change(struct diff_options *options, options->flags.has_changes =1 ; } +static int check_maybe_different_in_bloom_filter (struct rev_info *revs, +struct commit *commit, +struct bloom_key *key, +struct bloom_filter_settings *settings)
All right, this function name is certainly descriptive. I wonder if it wouldn't be better to use a shorter name, like maybe_different(), or maybe_not_treesame(), so that the conditional using this function would read naturally:
if (!maybe_different(revs, commit, revs->bloom_key,
revs->bloom_filter_settings))
return REV_TREE_SAME;
But this might be just a matter of taste.
revision.c static void file_change(struct diff_options *options, · line 638
Quoted 7 lines
revision.c +7
-0+{ +struct bloom_filter *filter; + +if (!revs->repo->objects->commit_graph) +return -1 ; +if (commit->generation ==GENERATION_NUMBER_INFINITY ) +return -1 ;
O.K., so we check that there is loaded commit graph, and that given commit is in a commit graph, otherwise we return "no data".
I agree with distinguishing between "no data" value (which is <0, a convention for denoting errors), and "maybe" value. Currently this distinction is not utilized, but it would help in the case of more than one path given -- in "no data" case there is no need to check other paths against non-existing Bloom filter.
revision.c static void file_change(struct diff_options *options, · line 640
Quoted 2 lines
revision.c +2
-0+if (!key || !settings) +return -1 ;
Why the check for non-NULL 'key' and 'settings' is the last check?
BTW. when it is possible for key or settings to be NULL? Or is it just defensive programming?
revision.c static void file_change(struct diff_options *options, · line 642
Quoted 2 lines
revision.c +2
-0+ + filter =get_bloom_filter (revs->repo, commit,0 );
O.K., we won't be recomputing Bloom filter if it is not present either on slab (as "inside-out" auxiliary data for a commit), or in the commit-graph (in Bloom filter chunks).
revision.c static void file_change(struct diff_options *options, · line 645
Quoted 3 lines
revision.c +3
-0+ +if (!filter || !filter->len) +return 1 ;
Sidenote: bloom_filter_contains() would also indirectly check for filter->len being zero. Though this doesn't cost much.
Shouldn't !filter case return value of -1 i.e. "no data", rather than return value of 1 i.e. "maybe"?
revision.c static void file_change(struct diff_options *options, · line 648
Quoted 3 lines
revision.c +3
-0+ +return bloom_filter_contains (filter, key, settings); +}
All right.
Quoted 12 lines
revision.c +3
-1+static int rev_compare_tree (struct rev_info *revs, -struct commit *parent,struct commit *commit) +struct commit *parent,struct commit *commit,int nth_parent) {struct tree *t1 =get_commit_tree (parent);struct tree *t2 =get_commit_tree (commit); +int bloom_ret =1 ;if (!t1)return REV_TREE_NEW ;
revision.c static int rev_compare_tree(struct rev_info *revs, · line 680
Quoted 4 lines
revision.c +1
-0@@ -653,6 +677,16 @@ static int rev_compare_tree(struct rev_info *revs,return REV_TREE_SAME ; } +if (revs->pruning.pathspec.nr ==1 && !nth_parent) {
All right, Bloom filter stores information about changed paths with respect to first-parent changes only, so if we are asking about is not a first parent (where nth_parent == 0), we cannot use Bloom filter.
Currently we limit the check to single pathspec only; that is a good start and a good simplification.
revision.c static int rev_compare_tree(struct rev_info *revs, · line 687
Quoted 7 lines
revision.c +7
-0+ bloom_ret =check_maybe_different_in_bloom_filter (revs, + commit, + revs->bloom_key, + revs->bloom_filter_settings); + +if (bloom_ret ==0 ) +return REV_TREE_SAME ;
Pretty straightforward.
revision.c static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit) · line 892
Quoted 11 lines
revision.c +3
-1+ } + tree_difference =REV_TREE_SAME ; revs->pruning.flags.has_changes =0 ; if (diff_tree_oid(&t1->object.oid, &t2->object.oid, "",@@ -855,7 +889,7 @@ static void try_to_simplify_commit(struct rev_info *revs, struct commit *commit)die ("cannot simplify commit %s (because of %s)" ,oid_to_hex (&commit->object.oid),oid_to_hex (&p->object.oid)); -switch (rev_compare_tree (revs, p, commit)) { +switch (rev_compare_tree (revs, p, commit, nth_parent)) {
All right, we need to pass information about the index of the parent; and we have just done that. Good.
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3379
Quoted 8 lines
revision.c +1
-0case REV_TREE_SAME :if (!revs->simplify_history || !relevant_commit (p)) {/* Even if a merge with an uninteresting @@ -3342,6 +3376,33 @@ static void expand_topo_walk(struct rev_info *revs, struct commit *commit) } } +static void prepare_to_use_bloom_filter (struct rev_info *revs)
All right, I see that pointers to bloom_key and bloom_filter_settings were added to the rev_info struct. I understand why the former is here, but the latter seems to be there just as a shortcut (to not owned data), which is fine but a bit strange.
Or is the latter here to allow for Bloom filter settings to possibly change from commit-graph file in the chain to commit-graph file, and thus from commit to commit?
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3381
Quoted 2 lines
revision.c +2
-0+{ +struct pathspec_item *pi;
Maybe 'pathspec' (or the like) instead of short and cryptic 'pi' would be better a better name... unless 'pi' is used in other places already.
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3386
Quoted 5 lines
revision.c +5
-0+const char *path; +size_t len; + +if (!revs->commits) +return ;
When revs->commits may be NULL? I understand that we need to have this check because we use revs->commits->item next (sidenote: can revs ever be NULL?).
Would git log --all -- <path> use Bloom filters (as it theoretically could)?
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3388
Quoted 2 lines
revision.c +2
-0+ +parse_commit (revs->commits->item);
Why parsing first commit on the list of starting commits is needed here? Please help me understand this line.
And shouldn't we use repo_parse_commit() here?
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3395
Quoted 7 lines
revision.c +7
-0+ +if (!revs->repo->objects->commit_graph) +return ; + + revs->bloom_filter_settings = revs->repo->objects->commit_graph->settings; +if (!revs->bloom_filter_settings) +return ;
All right, so if there is no commit graph, or the commit graph does not include Bloom filter data, there is nothing to do.
Though I worry that it would make Git do not use Bloom filter if the top commit-graph in the chain does not include Bloom filter data, while other commit-graph files do (and Git could have used that information to speed up the file history query).
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3399
Quoted 4 lines
revision.c +4
-0+ + pi = &revs->pruning.pathspec.items[0 ]; + path = pi->match; + len =strlen (path);
Why not the following, if we do not do any checks for 'pi' value:
+ path = &revs->pruning.pathspec.items[0]->match;
A question: is the path in the match field in struct pathspec normalized with respect to trailing slash (for directories)? Bloom filter stores pathnames for directories without trailing slash.
What I mean is if, for example, both of those would use Bloom filter data:
$ git log -- Documentation/ $ git log -- Documentation
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3403
Quoted 4 lines
revision.c +4
-0+ +load_bloom_filters (); + revs->bloom_key =xmalloc (sizeof (struct bloom_key )); +fill_bloom_key (path, len, revs->bloom_key, revs->bloom_filter_settings);
All right, looks good.
Though... do we leak revs->bloom_key, as should we worry about it?
revision.c int prepare_revision_walk(struct rev_info *revs) · line 3456
Quoted 11 lines
revision.c +4
-0+} +int prepare_revision_walk (struct rev_info *revs) {int i;@@ -3391,6 +3452,8 @@ int prepare_revision_walk(struct rev_info *revs)simplify_merges (revs);if (revs->children.name)set_children (revs); +if (revs->pruning.pathspec.nr ==1 ) +prepare_to_use_bloom_filter (revs);
Looks good.
Minor nitpick: 4 spaces instead of tab are used for indentation (or, to be more exact a tab followed by 4 space, instead of two tabs):
+ if (revs->pruning.pathspec.nr == 1) + prepare_to_use_bloom_filter(revs);
Quoted 17 lines
revision.c +0
-0return 0 ; }revision.h +2
-0@@ -56,6 +56,8 @@ struct repository;struct rev_info ;struct string_list ;struct saved_parents ; +struct bloom_key ; +struct bloom_filter_settings ; define_shared_commit_slab(revision_sources, char *);struct rev_cmdline_info {
revision.h struct rev_info { · line 298
Quoted 6 lines
revision.h +3
-0@@ -291,6 +293,9 @@ struct rev_info {struct revision_sources *sources;struct topo_walk_info *topo_walk_info; + +struct bloom_key *bloom_key; +struct bloom_filter_settings *bloom_filter_settings;
It might be a good idea to add one-line comment above those newly introduced fields. The struct rev_info has many subsections of fields described by such comments (or even block comments), like e.g.
/* Starting list */
/* Parents of shown commits */
/* The end-points specified by the end user */ /* excluding from --branches, --refs, etc. expansion */ /* Traversal flags */
/* diff info for patches and for paths limiting */
/*
* Whether the arguments parsed by setup_revisions() included any
* "input" revisions that might still have yielded an empty pending
* list (e.g., patterns like "--all" or "--glob").
*/
Quoted 11 lines
revision.h +0
-0};int ref_excluded (struct string_list *,const char *path);t/t4216-log-bloom.sh new file +2
-0@@ -0,0 +1,74 @@ +#!/bin/sh +
t/t4216-log-bloom.sh line 12
Quoted 10 lines
t/t4216-log-bloom.sh new file +10
-0+test_description='git log for a path with bloom filters' +. ./test-lib.sh + +test_expect_success 'setup repo' ' + git init && + git config core.commitGraph true && + git config gc.writeCommitGraph false && + infodir=".git/objects/info" && + graphdir="$infodir/commit-graphs" && + test_oid_init
Why do you use test_oid_init, when you are *not* using test_oid? I guess it is because t5318-commit-graph.sh uses it, isn't it?
The graphdir shell variable is not used either.
t/t4216-log-bloom.sh line 25
Quoted 13 lines
t/t4216-log-bloom.sh new file +13
-0+' + +test_expect_success 'create 9 commits and repack' ' + test_commit c1 file1 && + test_commit c2 file2 && + test_commit c3 file3 && + test_commit c4 file1 && + test_commit c5 file2 && + test_commit c6 file3 && + test_commit c7 file1 && + test_commit c8 file2 && + test_commit c9 file3 +'
Wouldn't it be better for this step to be a part of 'setup repo' step? Anyway, the test name says '... and repack', but git repack is missing (it should be done after last test_commit).
I think it would be good idea to test behavior of Bloom filters with respect to directories, so at least one file should be in a subdirectory (maybe even deeper in hierarchy).
We should also test the behavior with respect to merges, and when we are not following the first parent. But that might be a separate part of this test.
t/t4216-log-bloom.sh line 27
Quoted 2 lines
t/t4216-log-bloom.sh new file +2
-0+ +printf "c7\nc4\nc1" > expect_file1
Doing things outside test is discouraged. We can create a separate test that creates those expect_file* files, or it can be a part of 'create commits' test.
Anyway, instead of doing test without Bloom filters (something that should have been tested already by other parts of testsuite), and then doing the same test with Bloom filter, why not compare that the result without and with Bloom filter is the same. The t5318-commit-graph.sh test does this with help of graph_git_two_modes() function:
graph_git_two_modes () {
git -c core.commitGraph=true $1 >output
git -c core.commitGraph=false $1 >expect
test_cmp expect output
}Sidenote: I wonder if it is high time to create t/lib-commit-graph.sh helper with, among others, this common function.
t/t4216-log-bloom.sh line 30
Quoted 3 lines
t/t4216-log-bloom.sh new file +3
-0+ +test_expect_success 'log without bloom filters' ' + git log --pretty="format:%s" -- file1 > actual &&
CodingGuidelines:57: Redirection operators should be written with space before, but no space after them. (Minor nitpick)
+ git log --pretty="format:%s" -- file1 >actual &&
t/t4216-log-bloom.sh line 34
Quoted 4 lines
t/t4216-log-bloom.sh new file +4
-0+ test_cmp expect_file1 actual +' + +printf "c8\nc7\nc5\nc4\nc2\nc1" > expect_file1_file2
+printf "c8\nc7\nc5\nc4\nc2\nc1" >expect_file1_file2
t/t4216-log-bloom.sh line 37
Quoted 3 lines
t/t4216-log-bloom.sh new file +3
-0+ +test_expect_success 'multi-path log without bloom filters' ' + git log --pretty="format:%s" -- file1 file2 > actual &&
+ git log --pretty="format:%s" -- file1 file2 >actual &&
t/t4216-log-bloom.sh line 41
Quoted 4 lines
t/t4216-log-bloom.sh new file +4
-0+ test_cmp expect_file1_file2 actual +' + +graph_read_expect() {
CodingGuidelines:144: We prefer a space between the function name and the parentheses, and no space inside the parentheses. (Minor nitpick)
+graph_read_expect () {t/t4216-log-bloom.sh line 47
Quoted 6 lines
t/t4216-log-bloom.sh new file +6
-0+ OPTIONAL="" + NUM_CHUNKS=5 + if test ! -z $2 + then + OPTIONAL=" $2" + NUM_CHUNKS=$((3 + $(echo "$2" | wc -w)))
This should be either
+ NUM_CHUNKS=$((5 + $(echo "$2" | wc -w)))
or more future proof
+ NUM_CHUNKS=$(($NUM_CHUNKS + $(echo "$2" | wc -w)))
We got away with this bug because we were not using octopus merges, and there were no optional core chunks, that is we never call graph_read_expect with second parameter in this test.
t/t4216-log-bloom.sh line 49
Quoted 2 lines
t/t4216-log-bloom.sh new file +2
-0+ fi + cat >expect <<- EOF
Why there is space between "<<-" and "EOF"?
t/t4216-log-bloom.sh line 62
Quoted 13 lines
t/t4216-log-bloom.sh new file +13
-0+ header: 43475048 1 1 $NUM_CHUNKS 0 + num_commits: $1 + chunks: oid_fanout oid_lookup commit_metadata bloom_indexes bloom_data$OPTIONAL + EOF + test-tool read-graph >output && + test_cmp expect output +} + +test_expect_success 'write commit graph with bloom filters' ' + git commit-graph write --reachable --changed-paths && + test_path_is_file $infodir/commit-graph && + graph_read_expect "9" +'
All right, this is preparatory step for further tests.
t/t4216-log-bloom.sh line 72
Quoted 10 lines
t/t4216-log-bloom.sh new file +10
-0+ +test_expect_success 'log using bloom filters' ' + git log --pretty="format:%s" -- file1 > actual && + test_cmp expect_file1 actual +' + +test_expect_success 'multi-path log using bloom filters' ' + git log --pretty="format:%s" -- file1 file2 > actual && + test_cmp expect_file1_file2 actual +'
With graph_git_two_modes() it would be much simpler:
+test_expect_success 'single-path log' ' + git_graph_two_modes "git log --pretty=format:%s -- file1" +' +test_expect_success 'multi-path log' ' + git_graph_two_modes "git log --pretty=format:%s -- file1 file2" +'
What is missing is:
1. checking that Git is actually _using_ Bloom filters (which might be difficult to do)
2. testing that Bloom filters work also for history of subdirectories e.g. "git log -- subdir/" and "git log -- subdir"; this would of course require adjusting setup step
3. testing specific behaviors, like "git log --all -- file1"
4. merges with history following second parent
5. commits with no changes and/or merges with no first-parent changes
6. commit with more than 512 changed files (marked as slow test, and perhaps created with fast-import interface, like bulk commit creation in test_commit_bulk)
t/t4216-log-bloom.sh line 74
Quoted 2 lines
t/t4216-log-bloom.sh new file +2
-0+ +test_done
Best regards,
Signature · 1 line
Jakub Narębski
Re: [PATCH 8/9] revision.c: use bloom filters to speed up path based revision walks
Quoted 15 lines · Jakub Narebski
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3379
Quoted 8 lines · Garima Singh via GitGitGadget
revision.c +1
-0case REV_TREE_SAME :if (!revs->simplify_history || !relevant_commit (p)) {/* Even if a merge with an uninteresting @@ -3342,6 +3376,33 @@ static void expand_topo_walk(struct rev_info *revs, struct commit *commit) } } +static void prepare_to_use_bloom_filter (struct rev_info *revs)All right, I see that pointers to
bloom_keyandbloom_filter_settingswere added to therev_infostruct. I understand why the former is here, but the latter seems to be there just as a shortcut (to not owned data), which is fine but a bit strange.
Quoted 4 lines
Or is the latter here to allow for Bloom filter settings to possibly change from commit-graph file in the chain to commit-graph file, and thus from commit to commit?
The latter. The idea is to keep the implementation open to that possibility. Load the bloom filter settings from the commit graph file you are dealing with and use those settings to fill out the bloom_key.
Quoted 10 lines
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3386
Quoted 5 lines
revision.c +5
-0+const char *path; +size_t len; + +if (!revs->commits) +return ;When
revs->commitsmay be NULL? I understand that we need to have this check because we userevs->commits->itemnext (sidenote: can revs ever be NULL?).
Quoted 3 lines
Would
git log --all -- <path>use Bloom filters (as it theoretically could)?
I am being defensive about revs->commits being NULL for the reason you called out.
And yes, git log --all <path> does use Bloom filters if provided a single pathspec and when following the first parent.
Quoted 11 lines
revision.c static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3395
Quoted 7 lines
revision.c +7
-0+ +if (!revs->repo->objects->commit_graph) +return ; + + revs->bloom_filter_settings = revs->repo->objects->commit_graph->settings; +if (!revs->bloom_filter_settings) +return ;All right, so if there is no commit graph, or the commit graph does not include Bloom filter data, there is nothing to do.
Quoted 5 lines
Though I worry that it would make Git do not use Bloom filter if the top commit-graph in the chain does not include Bloom filter data, while other commit-graph files do (and Git could have used that information to speed up the file history query).
Thanks for bringing this up! I need to test this scenario out more.
Quoted 13 lines
Review static void expand_topo_walk(struct rev_info *revs, struct commit *commit) · line 3393
Quoted 2 lines
(quoted diff) +2
-0+ +printf "c7\nc4\nc1" > expect_file1Doing things outside test is discouraged. We can create a separate test that creates those expect_file* files, or it can be a part of 'create commits' test.
Anyway, instead of doing test without Bloom filters (something that should have been tested already by other parts of testsuite), and then doing the same test with Bloom filter, why not compare that the result without and with Bloom filter is the same. The
t5318-commit-graph.shtest does this with help ofgraph_git_two_modes()function:
Quoted 9 lines
graph_git_two_modes () { git -c core.commitGraph=true $1 >output git -c core.commitGraph=false $1 >expect test_cmp expect output }Sidenote: I wonder if it is high time to create
t/lib-commit-graph.shhelper with, among others, this common function.
Thank you! I have restructured the test to do almost everything you have suggested.
Also, a note for this v1 RFC series: I am working on proper formal tests right now. I didn't want to wait to get these nailed down before sending out the RFC series and getting the ball rolling.
I have taken note of all the testing suggestions you have made in your review. They are very helpful and I appreciate it!
Creating t/lib-commit-graph.sh helper would be orthogonal to this series, so I will follow up with a separate series that does this.
Cheers!
Garima Singh
PATCH 9/9 commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag to the test setup suite in order to toggle writing bloom filters when running any of the git tests. If set to true, we will compute and write bloom filters every time a test calls git commit-graph write.
The test suite passes when GIT_TEST_COMMIT_GRAPH and GIT_COMMIT_GRAPH_BLOOM_FILTERS are enabled.
--- builtin/commit-graph.c | 2 +- ci/run-build-and-tests.sh | 1 + commit-graph.h | 1 + t/README | 3 +++ t/t4216-log-bloom.sh | 3 +++ t/t5318-commit-graph.sh | 2 ++ t/t5324-split-commit-graph.sh | 1 + t/t5325-commit-graph-bloom.sh | 3 +++ 8 files changed, 15 insertions(+), 1 deletion(-)
builtin/commit-graph.c +1 -1
@@ -146,7 +146,7 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; -if (opts.enable_bloom_filters) +if (opts.enable_bloom_filters ||git_env_bool (GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS ,0 )) flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ; read_replace_refs =0 ;
ci/run-build-and-tests.sh +1 -0
@@ -19,6 +19,7 @@ linux-gcc) export GIT_TEST_OE_SIZE=10 export GIT_TEST_OE_DELTA_SIZE=5 export GIT_TEST_COMMIT_GRAPH=1 + export GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=1 export GIT_TEST_MULTI_PACK_INDEX=1 make test ;;
commit-graph.h +1 -0
@@ -8,6 +8,7 @@#define GIT_TEST_COMMIT_GRAPH "GIT_TEST_COMMIT_GRAPH"#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD" +#define GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS "GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS"struct commit ;struct bloom_filter_settings ;
t/README +3 -0
@@ -378,6 +378,9 @@ GIT_TEST_COMMIT_GRAPH=<boolean>, when true, forces the commit-graph to be written after every 'git commit' command, and overrides the 'core.commitGraph' setting to true. +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=<boolean>, when true, forces commit-graph +write to compute and write bloom filters for every 'git commit-graph write' + GIT_TEST_FSMONITOR=$PWD/t7519/fsmonitor-all exercises the fsmonitor code path for utilizing a file system monitor to speed up detecting new or changed files.
t/t4216-log-bloom.sh +3 -0
@@ -3,6 +3,9 @@ test_description='git log for a path with bloom filters' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 + test_expect_success 'setup repo' ' git init && git config core.commitGraph true &&
t/t5318-commit-graph.sh +2 -0
@@ -3,6 +3,8 @@ test_description='commit graph' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 + test_expect_success 'setup full repo' ' mkdir full && cd "$TRASH_DIRECTORY/full" &&
t/t5324-split-commit-graph.sh +1 -0
@@ -4,6 +4,7 @@ test_description='split commit graph' . ./test-lib.sh GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 test_expect_success 'setup repo' ' git init &&
t/t5325-commit-graph-bloom.sh +3 -0
@@ -3,6 +3,9 @@ test_description='commit graph with bloom filters' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 + test_expect_success 'setup repo' ' git init && git config core.commitGraph true &&
Signature · 1 line
gitgitgadget
Re: [PATCH 9/9] commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
Quoted 6 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add
GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERStest flag to the test setup suite in order to toggle writing bloom filters when running any of the git tests. If set to true, we will compute and write bloom filters every time a test callsgit commit-graph write.
OK, so it works in addition to GIT_TEST_COMMIT_GRAPH.
Quoted 3 lines
The test suite passes when
GIT_TEST_COMMIT_GRAPHandGIT_COMMIT_GRAPH_BLOOM_FILTERSare enabled.
Good. Very good.
No errors found by Continuous Integration setup either?
Quoted 19 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- builtin/commit-graph.c | 2 +- ci/run-build-and-tests.sh | 1 + commit-graph.h | 1 + t/README | 3 +++ t/t4216-log-bloom.sh | 3 +++ t/t5318-commit-graph.sh | 2 ++ t/t5324-split-commit-graph.sh | 1 + t/t5325-commit-graph-bloom.sh | 3 +++ 8 files changed, 15 insertions(+), 1 deletion(-)builtin/commit-graph.c +0
-0
builtin/commit-graph.c static int graph_write(int argc, const char **argv) · line 151
Quoted 7 lines
builtin/commit-graph.c +1
-1@@ -146,7 +146,7 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; -if (opts.enable_bloom_filters) +if (opts.enable_bloom_filters ||git_env_bool (GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS ,0 )) flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ;
Very minor nitpick: not to make this line long, I would break it at the boolean operator, that is write
- if (opts.enable_bloom_filters) + if (opts.enable_bloom_filters || + git_env_bool(GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS, 0)) flags |= COMMIT_GRAPH_WRITE_BLOOM_FILTERS;
I agree that this is a good place to put this check, by pretending that --changed-paths option was given on command line. Looks good.
ci/run-build-and-tests.sh linux-gcc) · line 25
Quoted 13 lines
builtin/commit-graph.c +0
-0read_replace_refs =0 ;ci/run-build-and-tests.sh +1
-0@@ -19,6 +19,7 @@ linux-gcc) export GIT_TEST_OE_SIZE=10 export GIT_TEST_OE_DELTA_SIZE=5 export GIT_TEST_COMMIT_GRAPH=1 + export GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=1 export GIT_TEST_MULTI_PACK_INDEX=1 make test ;;
All right, adding this to CI would certainly exercise this feature.
commit-graph.h line 12
Quoted 10 lines
commit-graph.h +1
-0@@ -8,6 +8,7 @@#define GIT_TEST_COMMIT_GRAPH "GIT_TEST_COMMIT_GRAPH"#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD" +#define GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS "GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS"
All right (the ordering is a mater of taste).
t/README GIT_TEST_COMMIT_GRAPH=<boolean>, when true, forces the commit-graph to · line 383
Quoted 13 lines
commit-graph.h +0
-0struct commit ;struct bloom_filter_settings ;t/README +3
-0@@ -378,6 +378,9 @@ GIT_TEST_COMMIT_GRAPH=<boolean>, when true, forces the commit-graph to be written after every 'git commit' command, and overrides the 'core.commitGraph' setting to true. +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=<boolean>, when true, forces commit-graph +write to compute and write bloom filters for every 'git commit-graph write' +
Thanks for documenting this.
Missing full stop '.' at the end of the sentence. (Minor nit).
We might want to add ", as if '--changed-paths' option was given.", but it is not strictly necessary.
Quoted 8 lines
t/README +0
-0GIT_TEST_FSMONITOR=$PWD/t7519/fsmonitor-all exercises the fsmonitor code path for utilizing a file system monitor to speed up detecting new or changed files.t/t4216-log-bloom.sh +0
-0
t/t4216-log-bloom.sh line 8
Quoted 6 lines
t/t4216-log-bloom.sh +3
-0@@ -3,6 +3,9 @@ test_description='git log for a path with bloom filters' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 +
OK, neither of those setting increase the coverage for this test.
On the other hand they won't make tests fail (or at least they shouldn't, I think). The t5318-commit-graph.sh doesn't include GIT_TEST_COMMIT_GRAPH=0, after all.
t/t5318-commit-graph.sh line 7
Quoted 13 lines
t/t4216-log-bloom.sh +0
-0test_expect_success 'setup repo' ' git init && git config core.commitGraph true &&t/t5318-commit-graph.sh +2
-0@@ -3,6 +3,8 @@ test_description='commit graph' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 +
All right, adding Bloom filters to commit-graph file would make test cases utilizing graph_read_expect() fail.
t/t5324-split-commit-graph.sh test_description='split commit graph' · line 7
Quoted 12 lines
t/t5318-commit-graph.sh +0
-0test_expect_success 'setup full repo' ' mkdir full && cd "$TRASH_DIRECTORY/full" &&t/t5324-split-commit-graph.sh +1
-0@@ -4,6 +4,7 @@ test_description='split commit graph' . ./test-lib.sh GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0
All right, same here: adding Bloom filters to commit-graph would make test cases utilizing graph_read_expect() fail.
Sidenote: Here without GIT_TEST_COMMIT_GRAPH=0 tests that rely on precise timing of writing commit-graph to create split commit-graph would fail.
Quoted 8 lines
t/t5324-split-commit-graph.sh +0
-0test_expect_success 'setup repo' ' git init &&t/t5325-commit-graph-bloom.sh +0
-0
t/t5325-commit-graph-bloom.sh line 8
Quoted 6 lines
t/t5325-commit-graph-bloom.sh +3
-0@@ -3,6 +3,9 @@ test_description='commit graph with bloom filters' . ./test-lib.sh +GIT_TEST_COMMIT_GRAPH=0 +GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 +
This test also includes some split commit-graph test cases, so the above is necessary.
All right.
t/t5325-commit-graph-bloom.sh line 11
Quoted 3 lines
t/t5325-commit-graph-bloom.sh +0
-0test_expect_success 'setup repo' ' git init && git config core.commitGraph true &&
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH 9/9] commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
Quoted 9 lines · Jakub Narebski
Quoted 3 lines · Garima Singh via GitGitGadget
The test suite passes when
GIT_TEST_COMMIT_GRAPHandGIT_COMMIT_GRAPH_BLOOM_FILTERSare enabled.Good. Very good.
No errors found by Continuous Integration setup either?
Yes, the CI test pipelines all passed.
Cheers!
Garima Singh
Quoted 4 lines · Garima Singh via GitGitGadget
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
;-)
Quoted 4 lines · Garima Singh via GitGitGadget
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
Great to see progress here. I probably won't have time to review this carefully before the new year, but I did notice some low-hanging fruit on the generation side.
So here are a few patches to reduce the CPU and memory usage. They could be squashed in at the appropriate spots, or perhaps taken as inspiration if there are better solutions (especially for the first one).
I think we could go further still, by actually doing a non-recursive diff_tree_oid(), and then recursing into sub-trees ourselves. That would save us having to split apart each path to add the leading paths to the hashmap (most of which will be duplicates if the commit touched "a/b/c" and "a/b/d", etc). I doubt it would be that huge a speedup though. We have to keep a list of the touched paths anyway (since the bloom key parameters depend on the number of entries), and most of the time is almost certainly spent inflating the trees in the first place. However it might be easier to follow the code, and it would make it simpler to stop traversing at the 512-entry limit, rather than generating a huge diff only to throw it away.
[1/3]: commit-graph: examine changed-path objects in pack order [2/3]: commit-graph: free large diffs, too
[3/3]: commit-graph: stop using full rev_info for diffs
bloom.c | 18 +++++++++--------- commit-graph.c | 34 +++++++++++++++++++++++++++++++++- 2 files changed, 42 insertions(+), 10 deletions(-)
-Peff
PATCH 1/3 commit-graph: examine changed-path objects in pack order
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas (whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
Probably the "--reachable" code path would want something similar.
Or alternatively, we could use a different data structure (either a hash, or maybe even just a bit in "struct commit") to keep track of which oids we've seen, etc instead of sorting. And then we could keep the original order.
--- commit-graph.c | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-)
commit-graph.c +33 -1
@@ -17,6 +17,7 @@#include "replace-object.h" #include "progress.h" #include "bloom.h" +#include "commit-slab.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
@@ -48,6 +49,29 @@/* Remember to update object flag allocation in object.h */ #define REACHABLE (1u<<15) +/* Keep track of the order in which commits are added to our list. */ +define_commit_slab (commit_pos, int); +static struct commit_pos commit_pos =COMMIT_SLAB_INIT (1 , commit_pos); + +static void set_commit_pos (struct repository *r,const struct object_id *oid) +{ +static int32_t max_pos; +struct commit *commit =lookup_commit (r, oid); + +if (!commit) +return ;/* should never happen, but be lenient */ + + *commit_pos_at (&commit_pos, commit) = max_pos++; +} + +static int commit_pos_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; +return commit_pos_at (&commit_pos, a) - +commit_pos_at (&commit_pos, b); +} +char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);
@@ -1088,6 +1112,8 @@ static int add_packed_commits(const struct object_id *oid,oidcpy (&(ctx->oids.list[ctx->oids.nr]), oid); ctx->oids.nr++; +set_commit_pos (ctx->r, oid); +return 0 ; }
@@ -1208,6 +1234,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx) {int i;struct progress *progress =NULL ; +struct commit **sorted_by_pos;load_bloom_filters ();
@@ -1216,13 +1243,18 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)_ ("Computing commit diff Bloom filters" ), ctx->commits.nr); +ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr); +COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +for (i =0 ; i < ctx->commits.nr; i++) { -struct commit *c = ctx->commits.list[i]; +struct commit *c = sorted_by_pos[i];struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); } +free (sorted_by_pos);stop_progress (&progress); }
Signature · 1 line
2.24.1.1152.gda0b849012
Re: [PATCH 1/3] commit-graph: examine changed-path objects in pack order
Quoted 11 lines · Jeff King
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas (whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
I'm doing my own perf tests on these patches, and my copy of linux.git has four packs of varying sizes (corresponding with my rare fetches and lack of repacks). My time goes from 3m50s to 3m00s. I was confused at first, but then realized that I used the "--reachable" flag. In that case, we never run set_commit_pos(), so all positions are equal and the sort is not helpful.
I thought that inserting some set_commit_pos() calls into close_reachable() and add_missing_parents() would give some amount of time-order to the commits as we compute the filters. However, the time did not change at all.
I've included the patch below for reference, anyway.
Thanks,
-Stolee
-->8--
From e7c63d8db09be81ce213ba7f112bb3d2f537bf4a Mon Sep 17 00:00:00 2001
From: Derrick Stolee <[email protected]>
Date: Fri, 27 Dec 2019 09:47:49 -0500
Subject: [PATCH] commit-graph: set commit positions for --reachable
When running 'git commit-graph write --changed-paths', we sort the commits by pack-order to save time when computing the changed-paths bloom filters. This does not help when finding the commits via the --reachable flag.
Add calls to set_commit_pos() when walking the reachable commits, which provides an ordering similar to a topological ordering.
Unfortunately, the performance did not improve with this change.
--- commit-graph.c | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-)
commit-graph.c +5 -1
@@ -1126,6 +1126,8 @@ static void add_missing_parents(struct write_commit_graph_context *ctx, struct coidcpy (&ctx->oids.list[ctx->oids.nr], &(parent->item->object.oid)); ctx->oids.nr++; parent->item->object.flags |=REACHABLE ; + +set_commit_pos (ctx->r, &parent->item->object.oid); } } }
@@ -1142,8 +1144,10 @@ static void close_reachable(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->oids.nr; i++) {display_progress (ctx->progress, i +1 ); commit =lookup_commit (ctx->r, &ctx->oids.list[i]); -if (commit) +if (commit) { commit->object.flags |=REACHABLE ; +set_commit_pos (ctx->r, &commit->object.oid); + } }stop_progress (&ctx->progress);
Signature · 1 line
2.25.0.rc0
Re: [PATCH 1/3] commit-graph: examine changed-path objects in pack order
Quoted 20 lines · Derrick Stolee
Quoted 11 lines · Jeff King
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas (whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
I'm doing my own perf tests on these patches, and my copy of linux.git has four packs of varying sizes (corresponding with my rare fetches and lack of repacks). My time goes from 3m50s to 3m00s. I was confused at first, but then realized that I used the "--reachable" flag. In that case, we never run
set_commit_pos(), so all positions are equal and the sort is not helpful.
Quoted 6 lines
I thought that inserting some
set_commit_pos()calls intoclose_reachable()andadd_missing_parents()would give some amount of time-order to the commits as we compute the filters. However, the time did not change at all.I've included the patch below for reference, anyway.
Yeah, I expected that would cover it, too. But instrumenting it to dump the position of each commit (see patch below), and then decorating "git log" output with the positions (see script below) shows that we're all over the map:
* 3
|\ | * 2791 | * 5476 | * 8520 | * 12040 | * 16036 * | 2790 |\ \ | * | 5475 | * | 8519 | * | 12039 | * | 16035 | * | 20517 | * | 25527 | |/ * | 5474 |\ \ | * | 8518 | * | 12038 * | | 8517
[...]
I think the root issue is that we never do any date-sorting on the commits. So:
- we hit each ref tip in lexical order; with tags, this is quite often the opposite of reverse-chronological
- we traverse breadth-first, but we don't order queue at all. So if we see a merge X, then we'll next process X^1 and X^2, and then X^1^, and then X^2^, and so forth. So we keep digging equally down simultaneous branches, even if one branch is way shorter than the other. Whereas a regular Git traversal will order the queue by commit timestamp, so it tends to be roughly chronological (of course a topo-sort would work too, but that's probably overkill).
I wonder if this would be simpler if "commit-graph --reachable" just used the regular revision machinery instead of doing its own custom traversal.
-Peff
Re: [PATCH 1/3] commit-graph: examine changed-path objects in pack order
Quoted 4 lines · Jeff King
Yeah, I expected that would cover it, too. But instrumenting it to dump the position of each commit (see patch below), and then decorating "git log" output with the positions (see script below) shows that we're all over the map:
I forgot the patch, of course. :)
I just dumped this trace:
---
commit-graph.c +1 -0
@@ -61,6 +61,7 @@ static void set_commit_pos(struct repository *r, const struct object_id *oid)if (!commit)return ;/* should never happen, but be lenient */ +trace_printf ("pos %s = %d" ,oid_to_hex (oid), max_pos); *commit_pos_at (&commit_pos, commit) = max_pos++; }
with:
rm -f .git/objects/info/commit-graph GIT_TRACE=$PWD/trace.out git commit-graph write --changed-paths --reachable
and then used:
cat >foo.pl <<\EOF
#!/usr/bin/perl
my %deco = do {
open(my $fh, '<', 'trace.out');
map { /pos (\S+) = (\d+)/ ? ($1 => $2) : () } <$fh>
};
while (<>) {
s/([0-9a-f]{40})/$deco{$1}/;
print;
}
EOFlike so:
git log --graph --format=%H | perl foo.pl | less
-Peff
Re: [PATCH 1/3] commit-graph: examine changed-path objects in pack order
In reply to Jeff KingQuoted 55 lines · Jeff King
Quoted 20 lines · Derrick Stolee
Quoted 11 lines · Jeff King
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas (whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
I'm doing my own perf tests on these patches, and my copy of linux.git has four packs of varying sizes (corresponding with my rare fetches and lack of repacks). My time goes from 3m50s to 3m00s. I was confused at first, but then realized that I used the "--reachable" flag. In that case, we never run
set_commit_pos(), so all positions are equal and the sort is not helpful.Quoted 6 lines
I thought that inserting some
set_commit_pos()calls intoclose_reachable()andadd_missing_parents()would give some amount of time-order to the commits as we compute the filters. However, the time did not change at all.I've included the patch below for reference, anyway.
Yeah, I expected that would cover it, too. But instrumenting it to dump the position of each commit (see patch below), and then decorating "git log" output with the positions (see script below) shows that we're all over the map:
* 3
|\ | * 2791 | * 5476 | * 8520 | * 12040 | * 16036 * | 2790 |\ \ | * | 5475 | * | 8519 | * | 12039 | * | 16035 | * | 20517 | * | 25527 | |/ * | 5474 |\ \ | * | 8518 | * | 12038 * | | 8517
Quoted 1 line
[...]
This makes a lot of sense why the previous approach did not work. Thanks!
Quoted 14 lines
I think the root issue is that we never do any date-sorting on the commits. So:
- we hit each ref tip in lexical order; with tags, this is quite often the opposite of reverse-chronological
- we traverse breadth-first, but we don't order queue at all. So if we see a merge X, then we'll next process X^1 and X^2, and then X^1^, and then X^2^, and so forth. So we keep digging equally down simultaneous branches, even if one branch is way shorter than the other. Whereas a regular Git traversal will order the queue by commit timestamp, so it tends to be roughly chronological (of course a topo-sort would work too, but that's probably overkill).
Quoted 3 lines
I wonder if this would be simpler if "commit-graph --reachable" just used the regular revision machinery instead of doing its own custom traversal.
Instead, why not use our already-computed generation numbers? That seems to improve the time a bit. (6m30s to 4m50s)
-->8--
From: Derrick Stolee <[email protected]>
Date: Fri, 27 Dec 2019 09:47:49 -0500
Subject: [PATCH] commit-graph: examine commits by generation number
When running 'git commit-graph write --changed-paths', we sort the commits by pack-order to save time when computing the changed-paths bloom filters. This does not help when finding the commits via the --reachable flag.
If not using pack-order, then sort by generation number before examining the diff. Commits with similar generation are more likely to have many trees in common, making the diff faster.
On the Linux kernel repository, this change reduced the computation time for 'git commit-graph write --reachable --changed-paths' from 6m30s to 4m50s.
--- commit-graph.c | 33 ++++++++++++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-)
commit-graph.c +30 -3
@@ -72,6 +72,25 @@ static int commit_pos_cmp(const void *va, const void *vb)commit_pos_at (&commit_pos, b); } +static int commit_gen_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; + +/* lower generation commits first */ +if (a->generation < b->generation) +return -1 ; +else if (a->generation > b->generation) +return 1 ; + +/* use date as a heuristic when generations are equal */ +if (a->date < b->date) +return -1 ; +else if (a->date > b->date) +return 1 ; +return 0 ; +} +char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);
@@ -849,7 +868,8 @@ struct write_commit_graph_context { report_progress:1, split:1, check_oids:1, - bloom:1; + bloom:1, + order_by_pack:1;const struct split_commit_graph_opts *split_opts;uint32_t total_bloom_filter_size;
@@ -1245,7 +1265,11 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr);COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); -QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); + +if (ctx->order_by_pack) +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +else +QSORT (sorted_by_pos, ctx->commits.nr, commit_gen_cmp);for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i];
@@ -1979,6 +2003,7 @@ int write_commit_graph(const char *obj_dir, }if (pack_indexes) { + ctx->order_by_pack =1 ;if ((res =fill_oids_from_packs (ctx, pack_indexes))) goto cleanup; }
@@ -1988,8 +2013,10 @@ int write_commit_graph(const char *obj_dir, goto cleanup; } -if (!pack_indexes && !commit_hex) +if (!pack_indexes && !commit_hex) { + ctx->order_by_pack =1 ;fill_oids_from_all_packs (ctx); + }close_reachable (ctx);
Signature · 1 line
2.25.0.rc0
Re: [PATCH 1/3] commit-graph: examine changed-path objects in pack order
Quoted 3 lines · Derrick Stolee
On the Linux kernel repository, this change reduced the computation time for 'git commit-graph write --reachable --changed-paths' from 6m30s to 4m50s.
I apologize, these numbers are based on the AzureDevOps repo, not the Linux kernel repo. After re-running with the Linux kernel repo my times improve from 3m00s to 1m37s.
-Stolee
PATCH 2/3 commit-graph: free large diffs, too
In reply to Jeff KingIf a diff we compute for --changed-path has more than 512 entries, we don't bother generating a bloom filter for it. But since we don't iterate over diff_queued_diff, we also don't free the filepairs and filespecs from the diff before clearing the queue. Let's make sure we do so.
This drops the peak heap usage of "commit-graph write --changed-paths" on linux.git from ~8GB to ~4GB.
--- bloom.c | 2 ++ 1 file changed, 2 insertions(+)
bloom.c +2 -0
@@ -226,6 +226,8 @@ struct bloom_filter *get_bloom_filter(struct repository *r, hashmap_free_entries(&pathmap, struct pathmap_hash_entry, entry); }else { +for (i =0 ; i < diff_queued_diff.nr; i++) +diff_free_filepair (diff_queued_diff.queue[i]); filter->data =NULL ; filter->len =0 ; }
Signature · 1 line
2.24.1.1152.gda0b849012
Re: [PATCH 2/3] commit-graph: free large diffs, too
Quoted 8 lines · Jeff King
If a diff we compute for --changed-path has more than 512 entries, we don't bother generating a bloom filter for it. But since we don't iterate over
diff_queued_diff, we also don't free the filepairs and filespecs from the diff before clearing the queue. Let's make sure we do so.This drops the peak heap usage of "commit-graph write --changed-paths" on linux.git from ~8GB to ~4GB.
In my testing, the heap size went from ~10gb to ~6gb.
Thanks,
-Stolee
PATCH 3/3 commit-graph: stop using full rev_info for diffs
In reply to Jeff KingWhen we perform a diff to get the set of changed paths for a commit, we initialize a full "struct rev_info" with setup_revisions(). But the only part of it we use is the diff_options struct. Besides being overly complex, this also leaks memory, as we use the fake argv to setup_revisions() create a pending array which is never cleared.
Let's just use diff_options directly. This reduces the peak heap usage of "git commit-graph write --changed-paths" on linux.git from ~4GB to ~1.2GB.
--- bloom.c | 16 +++++++--------- 1 file changed, 7 insertions(+), 9 deletions(-)
bloom.c +7 -9
@@ -154,8 +154,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,struct bloom_filter *filter;struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;int i; -struct rev_info revs; -const char *revs_argv[] = {NULL ,"HEAD" ,NULL }; +struct diff_options diffopt; filter =bloom_filter_slab_at (&bloom_filters, c);
@@ -170,16 +169,15 @@ struct bloom_filter *get_bloom_filter(struct repository *r,if (filter->data || !compute_if_null)return filter; -init_revisions (&revs,NULL ); - revs.diffopt.flags.recursive =1 ; - -setup_revisions (2 , revs_argv, &revs,NULL ); +repo_diff_setup (r, &diffopt); + diffopt.flags.recursive =1 ; +diff_setup_done (&diffopt);if (c->parents) -diff_tree_oid (&c->parents->item->object.oid, &c->object.oid,"" , &revs.diffopt); +diff_tree_oid (&c->parents->item->object.oid, &c->object.oid,"" , &diffopt);else -diff_tree_oid (NULL , &c->object.oid,"" , &revs.diffopt); -diffcore_std (&revs.diffopt); +diff_tree_oid (NULL , &c->object.oid,"" , &diffopt); +diffcore_std (&diffopt);if (diff_queued_diff.nr <=512 ) {struct hashmap pathmap;
Signature · 1 line
2.24.1.1152.gda0b849012
Re: [PATCH 3/3] commit-graph: stop using full rev_info for diffs
Quoted 9 lines · Jeff King
When we perform a diff to get the set of changed paths for a commit, we initialize a full "struct
rev_info" withsetup_revisions(). But the only part of it we use is thediff_optionsstruct. Besides being overly complex, this also leaks memory, as we use the fake argv tosetup_revisions()create a pending array which is never cleared.Let's just use
diff_optionsdirectly. This reduces the peak heap usage of "git commit-graph write --changed-paths" on linux.git from ~4GB to ~1.2GB.
In my testing, this went from ~6gb to ~4gb.
I'm guessing that my memory difference is related to how poorly my packs are repacked/redeltified.
Thanks,
-Stolee
Quoted 15 lines · Jeff King
Quoted 4 lines · Garima Singh via GitGitGadget
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
Great to see progress here. I probably won't have time to review this carefully before the new year, but I did notice some low-hanging fruit on the generation side.
So here are a few patches to reduce the CPU and memory usage. They could be squashed in at the appropriate spots, or perhaps taken as inspiration if there are better solutions (especially for the first one).
Quoted 11 lines
I think we could go further still, by actually doing a non-recursive
diff_tree_oid(), and then recursing into sub-trees ourselves. That would save us having to split apart each path to add the leading paths to the hashmap (most of which will be duplicates if the commit touched "a/b/c" and "a/b/d", etc). I doubt it would be that huge a speedup though. We have to keep a list of the touched paths anyway (since the bloom key parameters depend on the number of entries), and most of the time is almost certainly spent inflating the trees in the first place. However it might be easier to follow the code, and it would make it simpler to stop traversing at the 512-entry limit, rather than generating a huge diff only to throw it away.
Thanks for these improvements. This diff machinery is new to us (Garima and myself).
Here are some recommendations (to Garima) for how to proceed with these patches. Please let me know if anyone disagrees.
Quoted 1 line
[1/3]: commit-graph: examine changed-path objects in pack order
This one is best kept as its own patch, as it shows a clear reason why we want to do the sort-by-position. It would also be a complicated patch to include this logic along with the first use of compute_bloom_filters().
Quoted 1 line
[2/3]: commit-graph: free large diffs, too
This one seems best to squash into "commit-graph: write changed paths bloom filters" with a Helped-by for Peff.
Quoted 1 line
[3/3]: commit-graph: stop using full
rev_infofor diffs
While I appreciate the clear benefit in the commit-message here, it may be best to also squash this one similarly.
Of course, if we create our own diff logic with the short-circuit capability, then perhaps these patches become obsolete. I'll spend a little time playing with options here.
Thanks!
-Stolee
Quoted 9 lines · Derrick Stolee
Here are some recommendations (to Garima) for how to proceed with these patches. Please let me know if anyone disagrees.
Quoted 1 line
[1/3]: commit-graph: examine changed-path objects in pack order
This one is best kept as its own patch, as it shows a clear reason why we want to do the sort-by-position. It would also be a complicated patch to include this logic along with the first use of
compute_bloom_filters().
Yeah, I'd agree this one could be a separate patch. It does need more work, though (as you found out, it does not cover --reachable at all).
The position counter also probably ought to be an unsigned (or even a uint32_t, which we usually consider a maximum bound for number of objects).
-Peff
Quoted 7 lines · Jeff King
Quoted 4 lines · Garima Singh via GitGitGadget
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
Quoted 7 lines
Great to see progress here. I probably won't have time to review this carefully before the new year, but I did notice some low-hanging fruit on the generation side.
So here are a few patches to reduce the CPU and memory usage. They could be squashed in at the appropriate spots, or perhaps taken as inspiration if there are better solutions (especially for the first one).
I tested these patches with the Linux kernel repo and reported my results on each patch. However, I wanted to also test on a larger internal repo (the AzureDevOps repo), which has ~500 commits with more than 512 changes, and generally has larger diffs than the Linux kernel repo.
| Version | Time | Memory | |----------|--------|--------| | Garima | 16m36s | 27.0gb | | Peff 1 | 6m32s | 28.0gb | | Peff 2 | 6m48s | 5.6gb | | Peff 3 | 6m14s | 4.5gb | | Shortcut | 3m47s | 4.5gb |
For reference, I found the time and memory information using "/usr/bin/time --verbose" in a bash script.
Quoted 11 lines
I think we could go further still, by actually doing a non-recursive
diff_tree_oid(), and then recursing into sub-trees ourselves. That would save us having to split apart each path to add the leading paths to the hashmap (most of which will be duplicates if the commit touched "a/b/c" and "a/b/d", etc). I doubt it would be that huge a speedup though. We have to keep a list of the touched paths anyway (since the bloom key parameters depend on the number of entries), and most of the time is almost certainly spent inflating the trees in the first place. However it might be easier to follow the code, and it would make it simpler to stop traversing at the 512-entry limit, rather than generating a huge diff only to throw it away.
By "Shortcut" in the table above, I mean the following patch on top of Garima's and Peff's changes. It inserts a max_changes option into struct diff_options to halt the diff early. This seemed like an easier change than creating a new tree diff algorithm wholesale.
Thanks,
-Stolee
-->8--
From: Derrick Stolee <[email protected]>
Date: Fri, 27 Dec 2019 10:13:48 -0500
Subject: [PATCH] diff: halt tree-diff early after max_changes
When computing the changed-paths bloom filters for the commit-graph, we limit the size of the filter by restricting the number of paths in the diff. Instead of computing a large diff and then ignoring the result, it is better to halt the diff computation early.
Create a new "max_changes" option in struct diff_options. If non-zero, then halt the diff computation after discovering strictly more changed paths. This includes paths corresponding to trees that change.
Use this max_changes option in the bloom filter calculations. This reduces the time taken to compute the filters for the Linux kernel repo from 2m50s to 2m35s. For a larger repo with more commits changing many paths, the time reduces from 6 minutes to under 4 minutes.
--- bloom.c | 4 +++- diff.h | 5 +++++ tree-diff.c | 5 +++++ 3 files changed, 13 insertions(+), 1 deletion(-)
bloom.c +3 -1
@@ -155,6 +155,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;int i;struct diff_options diffopt; +int max_changes =512 ; filter =bloom_filter_slab_at (&bloom_filters, c);
@@ -171,6 +172,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,repo_diff_setup (r, &diffopt); diffopt.flags.recursive =1 ; + diffopt.max_changes = max_changes;diff_setup_done (&diffopt);if (c->parents)
@@ -179,7 +181,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,diff_tree_oid (NULL , &c->object.oid,"" , &diffopt);diffcore_std (&diffopt); -if (diff_queued_diff.nr <=512 ) { +if (diff_queued_diff.nr <= max_changes) {struct hashmap pathmap;struct pathmap_hash_entry * e;struct hashmap_iter iter;
diff.h +5 -0
@@ -285,6 +285,11 @@ struct diff_options {/* Number of hexdigits to abbreviate raw format output to. */ int abbrev; +/* If non-zero, then stop computing after this many changes. */ +int max_changes; +/* For internal use only. */ +int num_changes; +int ita_invisible_in_index;/* white-space error highlighting */ #define WSEH_NEW (1<<12)
tree-diff.c +5 -0
@@ -434,6 +434,9 @@ static struct combine_diff_path *ll_diff_tree_paths(if (diff_can_quit_early (opt))break ; +if (opt->max_changes && opt->num_changes > opt->max_changes) +break ; +if (opt->pathspec.nr) {skip_uninteresting (&t, base, opt);for (i =0 ; i < nparent; i++)
@@ -518,6 +521,7 @@ static struct combine_diff_path *ll_diff_tree_paths(/* t↓ */ update_tree_entry (&t); + opt->num_changes++; }/* t > p[imin] */
@@ -535,6 +539,7 @@ static struct combine_diff_path *ll_diff_tree_paths( skip_emit_tp:/* ∀ pi=p[imin] pi↓ */ update_tp_entries (tp, nparent); + opt->num_changes++; } }
Signature · 1 line
2.25.0.rc0
Quoted 17 lines · Derrick Stolee
Quoted 3 lines
So here are a few patches to reduce the CPU and memory usage. They could be squashed in at the appropriate spots, or perhaps taken as inspiration if there are better solutions (especially for the first one).
I tested these patches with the Linux kernel repo and reported my results on each patch. However, I wanted to also test on a larger internal repo (the AzureDevOps repo), which has ~500 commits with more than 512 changes, and generally has larger diffs than the Linux kernel repo.
| Version | Time | Memory | |----------|--------|--------| | Garima | 16m36s | 27.0gb | | Peff 1 | 6m32s | 28.0gb | | Peff 2 | 6m48s | 5.6gb | | Peff 3 | 6m14s | 4.5gb | | Shortcut | 3m47s | 4.5gb |
Quoted 2 lines
For reference, I found the time and memory information using "
/usr/bin/time--verbose" in a bash script.
Thanks for giving it more exercise. My heap profiling was done with massif, which measures the heap directly. Measuring RSS would cover that, but will also include the mmap'd packfiles. That's probably why your linux.git numbers were slightly higher than mine.
(massif is a really great tool if you haven't used it, as it also shows which allocations were using the memory. But it's part of valgrind, so it definitely doesn't run on native Windows. It might work under WSL, though. I'm sure there are also other heap profilers on Windows).
Quoted 4 lines
By "Shortcut" in the table above, I mean the following patch on top of Garima's and Peff's changes. It inserts a
max_changesoption into structdiff_optionsto halt the diff early. This seemed like an easier change than creating a new tree diff algorithm wholesale.
Yeah, I'm not opposed to a diff feature like this.
But be careful, because...
diff.h struct diff_options { · line 291
Quoted 12 lines
diff.h +4
-0@@ -285,6 +285,11 @@ struct diff_options {/* Number of hexdigits to abbreviate raw format output to. */ int abbrev; +/* If non-zero, then stop computing after this many changes. */ +int max_changes; +/* For internal use only. */ +int num_changes;
This is holding internal state in diff_options, but the same diff_options is often used for multiple diffs (e.g., "git log --raw" would use the same rev_info.diffopt over and over again).
So it would need to be cleared between diffs. There's a similar feature in the "has_changes" flag, though it looks like it is cleared manually by callers. Yuck.
This isn't a problem for commit-graph right now, but:
- it actually could be using a single diff_options, which would be slightly simpler (it doesn't seem to save much CPU, though, because the initialization is relatively cheap)
- it's a bit of a subtle bug to leave hanging around for the next person who tries to use the feature
I actually wonder if this could be rolled into the has_changes and diff_can_quit_early() feature. This really just a generalization of that feature (which is like setting max_changes to "1").
-Peff
Quoted 19 lines · Jeff King
Quoted 17 lines · Derrick Stolee
Quoted 3 lines
So here are a few patches to reduce the CPU and memory usage. They could be squashed in at the appropriate spots, or perhaps taken as inspiration if there are better solutions (especially for the first one).
I tested these patches with the Linux kernel repo and reported my results on each patch. However, I wanted to also test on a larger internal repo (the AzureDevOps repo), which has ~500 commits with more than 512 changes, and generally has larger diffs than the Linux kernel repo.
| Version | Time | Memory | |----------|--------|--------| | Garima | 16m36s | 27.0gb | | Peff 1 | 6m32s | 28.0gb | | Peff 2 | 6m48s | 5.6gb | | Peff 3 | 6m14s | 4.5gb | | Shortcut | 3m47s | 4.5gb |
Quoted 7 lines
Quoted 2 lines
For reference, I found the time and memory information using "
/usr/bin/time--verbose" in a bash script.Thanks for giving it more exercise. My heap profiling was done with massif, which measures the heap directly. Measuring RSS would cover that, but will also include the mmap'd packfiles. That's probably why your linux.git numbers were slightly higher than mine.
That's interesting. I initially avoided massif because it is so much slower than /usr/bin/time. However, the inflated numbers could be explained by that. Also, the distinction between mem_heap and mem_heap_extra may have interesting implications. Looking online, it seems that large mem_heap_extra implies the heap is fragmented from many small allocations.
Here are my findings on the Linux repo:
| Version | mem_heap | mem_heap_extra | |----------|----------|----------------| | Peff 1 | 6,500mb | 913mb | | Peff 2 | 3,100mb | 286mb | | Peff 3 | 781mb | 235mb |
These numbers more closely match your numbers (in sum of the two columns).
Quoted 4 lines
(massif is a really great tool if you haven't used it, as it also shows which allocations were using the memory. But it's part of valgrind, so it definitely doesn't run on native Windows. It might work under WSL, though. I'm sure there are also other heap profilers on Windows).
I am using my Linux machine for my tests. Garima is using her Windows machine.
Quoted 26 lines
Quoted 4 lines
By "Shortcut" in the table above, I mean the following patch on top of Garima's and Peff's changes. It inserts a
max_changesoption into structdiff_optionsto halt the diff early. This seemed like an easier change than creating a new tree diff algorithm wholesale.Yeah, I'm not opposed to a diff feature like this.
But be careful, because...
diff.h struct diff_options { · line 291
Quoted 12 lines
diff.h +4
-0@@ -285,6 +285,11 @@ struct diff_options {/* Number of hexdigits to abbreviate raw format output to. */ int abbrev; +/* If non-zero, then stop computing after this many changes. */ +int max_changes; +/* For internal use only. */ +int num_changes;This is holding internal state in
diff_options, but the samediff_optionsis often used for multiple diffs (e.g., "git log --raw" would use the same rev_info.diffopt over and over again).
Quoted 3 lines
So it would need to be cleared between diffs. There's a similar feature in the "
has_changes" flag, though it looks like it is cleared manually by callers. Yuck.
You're right about this. What if we initialize it in diff_tree_paths() before it calls the recursive ll_difF_tree_paths()?
Quoted 6 lines
This isn't a problem for commit-graph right now, but:
- it actually could be using a single
diff_options, which would be slightly simpler (it doesn't seem to save much CPU, though, because the initialization is relatively cheap)
Quoted 6 lines
- it's a bit of a subtle bug to leave hanging around for the next person who tries to use the feature
I actually wonder if this could be rolled into the
has_changesanddiff_can_quit_early()feature. This really just a generalization of that feature (which is like settingmax_changesto "1").
I thought about this at first, but it only takes a struct diff_options right now. It does have an internally-mutated member (flags.has_changes) but it also seems a bit wrong to add a uint32_t of the count in this. Changing the prototype could be messy, too.
There are also multiple callers, and limiting everything to tree-diff.c limits the impact.
Thanks,
-Stolee
Quoted 7 lines · Jeff King
This is holding internal state in
diff_options, but the samediff_optionsis often used for multiple diffs (e.g., "git log --raw" would use the same rev_info.diffopt over and over again).So it would need to be cleared between diffs. There's a similar feature in the "
has_changes" flag, though it looks like it is cleared manually by callers. Yuck.
Do you mean we want reset_per_invocation_part_of_diff_options() helper or something?
Quoted 3 lines
I actually wonder if this could be rolled into the
has_changesanddiff_can_quit_early()feature. This really just a generalization of that feature (which is like settingmax_changesto "1").
Yeah, I wondered about the same thing, after seeing the impressive numbers ;-)
Hi,
Quoted 9 lines · Garima Singh via GitGitGadget
The commit graph feature brought in a lot of performance improvements across multiple commands. However, file based history continues to be a performance pain point, especially in large repositories.
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
Thanks for working on this!
Quoted 8 lines
Performance Gains: We tested the performance of git log -- path on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Very nice!
I have a question though. Are the performance gains only available with git log -- path or are they already available for example when doing a partial clone and/or a sparse checkout?
Quoted 5 lines
Future Work (not included in the scope of this series):
1. Supporting multiple path based revision walk
2. Adopting it in git blame logic.
3. Interactions with line log git log -L
Great!
Quoted 2 lines
This series is intended to start the conversation and many of the commit messages include specific call outs for suggestions and thoughts.
I think Peff said during the Virtual Contributor Summit that he was interested in using bitmaps to speed up partial clone on the server side. Would it make sense to use both bitmaps and bloom filters?
Thanks,
Christian.
Quoted 3 lines · Christian Couder
I have a question though. Are the performance gains only available with
git log -- pathor are they already available for example when doing a partial clone and/or a sparse checkout?
From my quick look at the code, anything that feeds a pathspec to a revision traversal would be helped. I'm not sure if it would help for partial/sparse traversals, though. There we actually need to know which blobs correspond to the paths in question, not just whether any particular commit touched them.
I also took a brief look at adding support to the custom blame-tree implementation we use at GitHub, and got about a 6x speedup.
Quoted 6 lines
Quoted 2 lines
This series is intended to start the conversation and many of the commit messages include specific call outs for suggestions and thoughts.
I think Peff said during the Virtual Contributor Summit that he was interested in using bitmaps to speed up partial clone on the server side. Would it make sense to use both bitmaps and bloom filters?
I think they're orthogonal. For size-based filters on blobs, you'd just use bitmaps as normal, because you can post-process the result to check the type and size of each object in the list (and I have patches to do this, but they need some polishing and we're not yet running them).
For path-based filters like a sparse specification, you can't use bitmaps at all; you have to do a real traversal. But there you still generally get all of the commits. I guess if a commit doesn't touch any path you're interested in, you could avoid walking into its tree at all, which might help. I haven't given it much thought yet.
-Peff
Quoted 6 lines · Jeff King
Quoted 3 lines · Christian Couder
I have a question though. Are the performance gains only available with
git log -- pathor are they already available for example when doing a partial clone and/or a sparse checkout?
Quoted 8 lines
From my quick look at the code, anything that feeds a pathspec to a revision traversal would be helped. I'm not sure if it would help for partial/sparse traversals, though. There we actually need to know which blobs correspond to the paths in question, not just whether any particular commit touched them.
I also took a brief look at adding support to the custom blame-tree implementation we use at GitHub, and got about a 6x speedup.
Is there any chance of upstreaming the blame-tree algorithm, perhaps as a separate mode for git-blame (invoked with git blame <directory>? Or is the algorithm too GitHub-specific?
Best,
Signature · 1 line
Jakub Narębski
Quoted 10 lines · Garima Singh via GitGitGadget
Hey!
The commit graph feature brought in a lot of performance improvements across multiple commands. However, file based history continues to be a performance pain point, especially in large repositories.
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's approach [2] and presents an updated and more polished RFC version of the feature.
It is nice to have this picked up for upstream, finally. The proof of concept works[1][2] were started more than a year ago.
On the other hand slow and steady adoption of commit-graph serialization and then extending it (generation numbers, topological sort, incremental update) feels like a good approach.
Quoted 8 lines
Performance Gains: We tested the performance of 'git log -- <path>' on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Could you provide some more statistics about this internal repository, such as number of files, number of commits, perhaps also number of all objects? Thanks in advance.
I wonder why such large difference in performance 2-5x vs 10-20x. Is it about the depth of the file hierarchy? How would the numbers look for files seated closer to the root in the same large repository, like 3-5 levels deep in the tree?
Quoted 3 lines
Future Work (not included in the scope of this series):
1. Supporting multiple path based revision walk
I wonder if it would ever be possible to support globbing, e.g. '*.c'
Quoted 1 line
2. Adopting it in git blame logic.
What about 'git log --follow <path>'?
Quoted 5 lines
3. Interactions with line log git log -L
This series is intended to start the conversation and many of the commit messages include specific call outs for suggestions and thoughts.
Quoted 7 lines
Cheers! Garima Singh
[1] https://lore.kernel.org/git/[email protected]/
[2] https://lore.kernel.org/git/[email protected]/Garima Singh (9):
commit-graph: add --changed-paths option to write
This summary is not easy to understand on first glance. Maybe:
commit-graph: add --changed-paths option to the write subcommand
or
commit-graph: add --changed-paths option to 'git commit-graph write'
would be better?
Quoted 37 lines
commit-graph: write changed paths bloom filters
commit-graph: useMAX_NUM_CHUNKS
commit-graph: document bloom filter format
commit-graph: write changed path bloom filters to commit-graph file.
commit-graph: test commit-graph write --changed-paths
commit-graph: reuse existing bloom filters during write.revision.c: use bloom filters to speed up path based revision walks
commit-graph: addGIT_TEST_COMMIT_GRAPH_BLOOM_FILTERStest flagDocumentation/git-commit-graph.txt | 5 + .../technical/commit-graph-format.txt | 17 ++ Makefile | 1 + bloom.c | 257 +++++++++++++++++ bloom.h | 51 ++++ builtin/commit-graph.c | 9 +- ci/run-build-and-tests.sh | 1 + commit-graph.c | 116 +++++++- commit-graph.h | 9 +- revision.c | 67 ++++- revision.h | 5 + t/README | 3 + t/helper/test-read-graph.c | 4 + t/t4216-log-bloom.sh | 77 ++++++ t/t5318-commit-graph.sh | 2 + t/t5324-split-commit-graph.sh | 1 + t/t5325-commit-graph-bloom.sh | 258 ++++++++++++++++++ 17 files changed, 875 insertions(+), 8 deletions(-) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100755 t/t4216-log-bloom.sh create mode 100755 t/t5325-commit-graph-bloom.shbase-commit:
b02fd2accad4d48078671adf38fe5b5976d77304
Published-As: https://github.com/gitgitgadget/git/releases/tag/pr-497%2Fgarimasi514%2FcoreGit-bloomFilters-v1
Fetch-It-Via: git fetch https://github.com/gitgitgadget/git pr-497/garimasi514/coreGit-bloomFilters-v1
Pull-Request: https://github.com/gitgitgadget/git/pull/497
Quoted 10 lines · Jakub Narebski
Quoted 8 lines · Garima Singh via GitGitGadget
Performance Gains: We tested the performance of 'git log -- <path>' on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Quoted 8 lines
Could you provide some more statistics about this internal repository, such as number of files, number of commits, perhaps also number of all objects? Thanks in advance.
I wonder why such large difference in performance 2-5x vs 10-20x. Is it about the depth of the file hierarchy? How would the numbers look for files seated closer to the root in the same large repository, like 3-5 levels deep in the tree?
The internal repository we saw these massive gains on has:
- 413579 commits.
- 183303 files distributed across 34482 folders The size on disk is about 17 GiB.
And yes, the difference is performance gains is mostly because of how deep the files were in the hierarchy. How often a file has been touched also makes a difference. The performance gains are less dramatic if the file has a very sparse history even if it is a deep file.
The numbers from the git and linux repos for instance, are for files closer to the root, hence 2x to 5x.
Thanks!
Garima Singh
Quoted 21 lines · Garima Singh
Quoted 11 lines · Jakub Narebski
Quoted 9 lines · Garima Singh via GitGitGadget
Performance Gains: We tested the performance of 'git log -- <path>' on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Quoted 8 lines
Could you provide some more statistics about this internal repository, such as number of files, number of commits, perhaps also number of all objects? Thanks in advance.
I wonder why such large difference in performance 2-5x vs 10-20x. Is it about the depth of the file hierarchy? How would the numbers look for files seated closer to the root in the same large repository, like 3-5 levels deep in the tree?
Quoted 4 lines
The internal repository we saw these massive gains on has:
- 413579 commits.
- 183303 files distributed across 34482 folders The size on disk is about 17 GiB.
Thank you for the data. Such information would be important consideration to help to find out whether enabling Bloom filters in given repository would be worth it.
Quoted 2 lines
And yes, the difference is performance gains is mostly because of how deep the files were in the hierarchy.
Right, this is understandable. If files are diep in hierarchy, then we have to unpack more tree objects to find out if the file was changed in a given commit (provided that finding differences do not terminate early thanks to hierarchical structure of tree objects).
Quoted 3 lines
How often a file has been touched
also makes a difference. The performance gains are less dramatic if the file has a very sparse history even if it is a deep file.
This looks a bit strange (or maybe I don't understand something).
Bloom filter can answer "no" and "maybe" to subset inclusion query. This means that if file was *not* changed, with great probability the answer from Bloom filter would be "no", and we would skip diff-ing trees (which may terminate early, though).
On the other hand if file was changed by the commit, and the answer from a Bloom filter is "maybe", then we have to perform diffing to make sure.
Quoted 3 lines
The numbers from the git and linux repos for instance, are for files closer to the root, hence 2x to 5x.
That is quite nice speedup, anyway (git repository cannot be even considered large; medium -- maybe).
P.S. I wonder if it would be worth to create some synthetical repository to test performance gains of Bloom filters, perhaps in t/perf...
Best,
Signature · 1 line
Jakub Narębski
On 1/20/2020 8:48 AM, Jakub Narebski wrote: >> How often a file has been touched
Quoted 5 lines
Quoted 2 lines
also makes a difference. The performance gains are less dramatic if the file has a very sparse history even if it is a deep file.
This looks a bit strange (or maybe I don't understand something).
Quoted 8 lines
Bloom filter can answer "no" and "maybe" to subset inclusion query. This means that if file was *not* changed, with great probability the answer from Bloom filter would be "no", and we would skip diff-ing trees (which may terminate early, though).
On the other hand if file was changed by the commit, and the answer from a Bloom filter is "maybe", then we have to perform diffing to make sure.
Yes. What I meant by statement however is that the performance gain i.e. difference in performance between using and not using bloom filters, is not always as dramatic if the history is sparse and the trees aren't touched as often. So it is largely dependent on the shape of the repo and the shape of the commit graph.
Quoted 7 lines
Quoted 3 lines
The numbers from the git and linux repos for instance, are for files closer to the root, hence 2x to 5x.
That is quite nice speedup, anyway (git repository cannot be even considered large; medium -- maybe).
Yeah. Git and Linux served as nice initial test beds. If you have any suggestions for interesting repos it would be worth running performanc investigations on, do let me know!
Quoted 4 lines
P.S. I wonder if it would be worth to create some synthetical repository to test performance gains of Bloom filters, perhaps in t/perf...
I will look into this after I get v1 out on the mailing list. Thanks!
Cheers
Garima Singh
Quoted 13 lines · Garima Singh
Quoted 11 lines · Jakub Narebski
Quoted 3 lines
How often a file has been touched
also makes a difference. The performance gains are less dramatic if the file has a very sparse history even if it is a deep file.This looks a bit strange (or maybe I don't understand something).
Bloom filter can answer "no" and "maybe" to subset inclusion query. This means that if file was *not* changed, with great probability the answer from Bloom filter would be "no", and we would skip diff-ing trees (which may terminate early, though).
Quoted 8 lines
Quoted 2 lines
On the other hand if file was changed by the commit, and the answer from a Bloom filter is "maybe", then we have to perform diffing to make sure.
Yes. What I meant by statement however is that the performance gain i.e. difference in performance between using and not using bloom filters, is not always as dramatic if the history is sparse and the trees aren't touched as often. So it is largely dependent on the shape of the repo and the shape of the commit graph.
It probably depends on the depth of changes in a typical skipped commit, I think.
If we are getting history for the core/java/com/android/ims/internal/uce/presence/IPresenceListener.aidl and the change is contained in libs/input/ directory, we have to unpack only two trees, independent on the depth of the file we are asking about.
It could be also possible, if Git is smart enough about it, to halt early if we are checking only if given path changed rather than calculating a full difftree. Say, for example, that the change was in core/java/org/apache/http/conn/ssl/SSLSocketFactory.java file, while we were getting the history for the following file core/java/com/android/ims/internal/uce/presence/IPresenceListener.aidl After unpacking two or three threes we know that the second file was not changed. But if we compute full diff, we have to unpack 8 trees. Quite a difference.
All example paths above came from AOSP repository that was used for testing different proposed generation numbers v2, see
https://github.com/derrickstolee/gen-test/blob/master/clone-repos.sh
Quoted 9 lines
Quoted 5 lines
Quoted 2 lines
The numbers from the git and linux repos for instance, are for files closer to the root, hence 2x to 5x.
That is quite nice speedup, anyway (git repository cannot be even considered large; medium -- maybe).
Yeah. Git and Linux served as nice initial test beds. If you have any suggestions for interesting repos it would be worth running performanc investigations on, do let me know!
If we want repositories with deep path hierarchy, Java projects with mandated directory structures might be a good choice, for example Android (AOSP):
git clone https://android.googlesource.com/platform/frameworks/base/ android-base
It is also quite large repository; in 2019 it had around 874000 commits, around the same as the Linux kernel repository.
Another large repository is Chromium -- though I don't know if it has deep filesystem hierarchy.
You can use the list of different large and large-ish repositories from
https://github.com/derrickstolee/gen-test/blob/master/clone-repos.sh
Other repositories with large number of commmits not on that list are LLVM Compiler, GCC (GNU Compiler Collection) -- just converted to Git, Homebrew, and Ruby on Rails.
Quoted 6 lines
Quoted 3 lines
P.S. I wonder if it would be worth to create some synthetical repository to test performance gains of Bloom filters, perhaps in t/perf...I will look into this after I get v1 out on the mailing list. Thanks!
It would be nice to have, but it can wait.
Keep up the good work!
Signature · 1 line
Jakub Narębski
Hi,
Quoted 2 lines · Garima Singh via GitGitGadget
This series is intended to start the conversation and many of the commit messages include specific call outs for suggestions and thoughts.
Since it's mostly in RFC stage, I'm holding off on line by line comments for now. I read the series (thanks for your patience) and I'll try to leave some review thoughts in the diffspec here.
Quoted 2 lines
Garima Singh (9):
[1/9] commit-graph: add --changed-paths option to write
I wonder if this can be combined with 2; without 2 actually the documentation is wrong for this one, right? Although I suppose you also mentioned 2 perhaps being too long :)
Quoted 1 line
[2/9] commit-graph: write changed paths bloom filters
As I understand it, this one always regenerates the bloom filter pieces, and doesn't write it down in the commit-graph file. How much longer does that take now than before? I don't have a great feel for how often 'git commit-graph' is run, or whether I need to be invoking it manually.
Quoted 2 lines
[3/9] commit-graph: use
MAX_NUM_CHUNKS[4/9] commit-graph: document bloom filter format
I suppose I might like to see this commit squashed with 5, but it's a nit. I'm thinking it'd be handy to say "git blame commit-graph" and see some nice doc about the format expected in the commit-graph file.
Quoted 1 line
[5/9] commit-graph: write changed path bloom filters to commit-graph file.
Ah, so here we finally write down the result from 2 to disk in the commit-graph file. And without 7, this gets recalculated every time we call 'git commit-graph' still.
As for a technical doc around here, I'd really appreciate one. But I'm speaking selfishly - I'd also be happy if I could watch a talk about this design to make sure I understand it right :)
Quoted 2 lines
[6/9] commit-graph: test commit-graph write --changed-paths [7/9] commit-graph: reuse existing bloom filters during write.
I saw an option to give up if there wasn't an existing bloom filter, but I didn't see an option here to force recalculating. Is there a scenario when that would be useful? What's the mitigation path if:
- I have a commit-graph with v0 of the bloom index piece, but update to Git which uses v1?
- My commit-graph file is corrupted in a way that the bloom filter results are incorrect and I am missing a blob change (and therefore not finding it during the walk)?
I think I understand that without this commit, 8 is not much speedup because we will be recalculating the filter for each commit, rather than using the written-down commit-graph file.
Quoted 2 lines
[8/9]
revision.c: use bloom filters to speed up path based revision walks [9/9] commit-graph: addGIT_TEST_COMMIT_GRAPH_BLOOM_FILTERStest flag
Speaking of making sure I understand the change right, I will also summarize my own understanding in the hopes that I can be corrected and others can learn too ;)
- The general idea is that we can write down a hint at the tree level saying "something I own did change this commit"; when we look for an object later, we can skip the commit where it looks like that path didn't change.
- The change is in two pieces: first, to generate the hints per tree (which happens during commit-graph); second, to use those hints to optimize a rev walk (which happens in revision.c patch 8)
- When we calculate the hints during commit-graph, we check the diff of each tree compared to its recent ancestor to see if there was a change; if so we calculate a hash for each path and use that as a key for a map from hash to path. After we look through everything changed in the diff, we can add it to a cumulative bloom filter list (one filter per commit) so we have a handy in-memory idea of which paths changed in each commit.
- When it's time to do the rev walk, we ask for the bloom filter for each commit and check if that commit's map contains the path to the object we're worried about; if so, then it's OK to unpack the tree and check if the path we are interested in actually did get changed during that commit.
Thanks.
- Emily
Quoted 31 lines
Documentation/git-commit-graph.txt | 5 + .../technical/commit-graph-format.txt | 17 ++ Makefile | 1 + bloom.c | 257 +++++++++++++++++ bloom.h | 51 ++++ builtin/commit-graph.c | 9 +- ci/run-build-and-tests.sh | 1 + commit-graph.c | 116 +++++++- commit-graph.h | 9 +- revision.c | 67 ++++- revision.h | 5 + t/README | 3 + t/helper/test-read-graph.c | 4 + t/t4216-log-bloom.sh | 77 ++++++ t/t5318-commit-graph.sh | 2 + t/t5324-split-commit-graph.sh | 1 + t/t5325-commit-graph-bloom.sh | 258 ++++++++++++++++++ 17 files changed, 875 insertions(+), 8 deletions(-) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100755 t/t4216-log-bloom.sh create mode 100755 t/t5325-commit-graph-bloom.shbase-commit:
b02fd2accad4d48078671adf38fe5b5976d77304
Published-As: https://github.com/gitgitgadget/git/releases/tag/pr-497%2Fgarimasi514%2FcoreGit-bloomFilters-v1
Fetch-It-Via: git fetch https://github.com/gitgitgadget/git pr-497/garimasi514/coreGit-bloomFilters-v1
Pull-Request: https://github.com/gitgitgadget/git/pull/497Signature · 1 line
gitgitgadget
On 1/21/2020 6:40 PM, Emily Shaffer wrote:>> Garima Singh (9):
Quoted 5 lines
Quoted 1 line
[1/9] commit-graph: add --changed-paths option to writeI wonder if this can be combined with 2; without 2 actually the documentation is wrong for this one, right? Although I suppose you also mentioned 2 perhaps being too long :)
True. The ordering of these commits has been a very subjective discussion. Leaving this commit isolated the way it is, does help separate the option from the bloom filter computation and commit graph write step.
Also for clarity, I have changed the message for 2/9 to:commit-graph: compute Bloom filters for changed paths
Quoted 6 lines
Quoted 1 line
[2/9] commit-graph: write changed paths bloom filters
As I understand it, this one always regenerates the bloom filter pieces, and doesn't write it down in the commit-graph file. How much longer does that take now than before? I don't have a great feel for how often 'git commit-graph' is run, or whether I need to be invoking it manually.
Yes. Computation and writing the bloom filters to the commit-graph file (2/9 and 5/9) are ideally one time operations per commit. The time taken depends on the shape and size of the repo since computation involves running a full diff. If you look at the discussions and patches exchanged by Dr. Stolee and Peff: it has improved greatly since this RFC patch. My next submission will carry these patches and more concrete numbers for time and memory.
Also, git commit-graph write is not run very frequently and is ideally incremental. A full rewrite is usually only done in case there is a corruption caught by git commit-graph verify in which case, you delete and rewrite. These are both manual operations.
See the docs here:
https://git-scm.com/docs/git-commit-graph
Note: that fetch.writeCommitGraph is now on by default in which case new computations happen automatically for newly fetched commits. But I am not adding the --changed-paths option to that yet. So computing, writing and using bloom filters will still be an opt-in feature that users need to manually run.
Quoted 3 lines
Quoted 1 line
[7/9] commit-graph: reuse existing bloom filters during write.
I saw an option to give up if there wasn't an existing bloom filter, but I didn't see an option here to force recalculating.
The way to force recalculation at the moment would be to delete the commit graph file and write it again.
Is there a scenario when that would be useful?
Yes, if there are algorithm or hash version changes in the changed paths logic we would need to rewrite. Each of the cases I can think of would involve triggering a recalculation by deleting and rewriting.
What's the mitigation path if:
Quoted 2 lines
- I have a commit-graph with v0 of the bloom index piece, but update to Git which uses v1?
Take a look at 5/9, when we are parsing the commit graph: if the code is expected to work with a particular version (hash_version = 1 in the current version), and the commit graph has a different version, we just ignore it. In the future, this is where we could extend this to support multiple versions.
Quoted 3 lines
- My commit-graph file is corrupted in a way that the bloom filter results are incorrect and I am missing a blob change (and therefore not finding it during the walk)?
The mitigation for any commit graph corruption is to delete and
rewrite.
If however, we are confident that the bloom filter computation itself is wrong, the immediate mitigations would be to deleting the commit graph file and rewriting without the --changed-paths option; and ofc report the bug so it can be investigated and fixed. :)
Quoted 8 lines
Speaking of making sure I understand the change right, I will also summarize my own understanding in the hopes that I can be corrected and others can learn too ;)
- The general idea is that we can write down a hint at the tree level saying "something I own did change this commit"; when we look for an object later, we can skip the commit where it looks like that path didn't change.
The hint we are storing is a bloom filter which answers "No" or "Maybe" to the question "Did file A change in commit c"
If the answer is No, we can ignore walking that commit. Else, we fall back to the diff algorithm like before to confirm if the file changed or not.
Quoted 3 lines
- The change is in two pieces: first, to generate the hints per tree (which happens during commit-graph); second, to use those hints to optimize a rev walk (which happens in
revision.cpatch 8)
Yes.
Quoted 4 lines
- When we calculate the hints during commit-graph, we check the diff of each tree compared to its recent ancestor to see if there was a change; if so we calculate a hash for each path and use that as a key for a map from hash to path. After we look through everything changed
Quoted 8 lines
in the diff, we can add it to a cumulative bloom filter list (one filter per commit) so we have a handy in-memory idea of which paths changed in each commit.
- When it's time to do the rev walk, we ask for the bloom filter for each commit and check if that commit's map contains the path to the object we're worried about; if so, then it's OK to unpack the tree and check if the path we are interested in actually did get changed during that commit.
Essentially yes. There are a few implementation specifics this description is glossing over, but I understand that is the intention.
Quoted 2 lines
Thanks.
- Emily
Cheers!
Garima Singh
Emily Shaffer <[email protected]> writes:
[...]
Quoted 8 lines
Speaking of making sure I understand the change right, I will also summarize my own understanding in the hopes that I can be corrected and others can learn too ;)
- The general idea is that we can write down a hint at the tree level saying "something I own did change this commit"; when we look for an object later, we can skip the commit where it looks like that path didn't change.
Or, to be more exact, we write hint about all the files and directories changed in the commit at the commit level.
Say, for example, that changed files are 'README' and 'subdir/file'. We store hint that 'README', 'subdir/file' and 'subdir' paths have changes in them.
Quoted 3 lines
- The change is in two pieces: first, to generate the hints per tree (which happens during commit-graph); second, to use those hints to optimize a rev walk (which happens in
revision.cpatch 8)
Right.
Quoted 3 lines
- When we calculate the hints during commit-graph, we check the diff of each tree compared to its recent ancestor to see if there was a change;
s/recent ancestor/first parent/
Right, though commits without any changes with respect to first-parent (or null tree in case of root i.e. parentless commit) should be rare.
Quoted 2 lines
if so we calculate a hash for each path and use that as a key
for a map from hash to path.
Yes, and no. Here we enter the details how Bloom filter is constructed. We don't store paths in Bloom filter -- it would take too much space.
The hashmap is used as an implementation of mathematical set, a temporary structure used during Bloom filter construction. We could have used string_list, but then we could waste time trying to add intermediate directories multiple times (for example if 'foo/bar' and 'foo/baz' files changed, we need to add 'foo' path only once to Bloom filter).
You can think of Bloom filter as a compact (and probabilistic, see below) representation of set of changed paths.
Quoted 4 lines
After we look through everything changed
in the diff, we can add it to a cumulative bloom filter list (one filter per commit) so we have a handy in-memory idea of which paths changed in each commit.
Yes.
Quoted 5 lines
- When it's time to do the rev walk, we ask for the bloom filter for each commit and check if that commit's map contains the path to the object we're worried about; if so, then it's OK to unpack the tree and check if the path we are interested in actually did get changed during that commit.
From the point of view of rev walk, we ask for the Bloom filter for each commit walked, and check if the (sub)set of changed paths includes given path.
Bloom filter can answer "no" -- then we can skip the commit simplifying history, or it can answer "maybe" -- then we need to check if file was actually changed unpacking the trees (there is around 1% probability that Bloom filter will say "maybe" if the path is not actually changed).
From the point of view of Bloom filter, if the path was actually changed the filter will always answer "maybe". If the path was not changed, then in most cases the filter will answer "no" but there is 1% of chance that it will answer "maybe".
I hope that helps,
--
Jakub Narębski
v2 cover Changed Paths Bloom Filters
In reply to Garima Singh via GitGitGadgetHey!
The commit graph feature brought in a lot of performance improvements across multiple commands. However, file based history continues to be a performance pain point, especially in large repositories.
Adopting changed path bloom filters has been discussed on the list before, and a prototype version was worked on by SZEDER Gábor, Jonathan Tan and Dr. Derrick Stolee [1]. This series is based on Dr. Stolee's proof of concept in
[2]
Performance Gains: We tested the performance of git log -- path on the git repo, the linux repo and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos: We observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree: We observed 10x to 20x speed ups, with some paths going up to 28 times faster.
Future Work (not included in the scope of this series):
1. Supporting multiple path based revision walk
2. Adopting it in git blame logic.
3. Interactions with line log git log -L
----------------------------------------------------------------------------
Updates since the last submission
* Removed all the RFC callouts, this is a ready for full review version
* Added unit tests for the bloom filter computation layer
* Added more evolved functional tests for git log
* Fixed a lot of the bugs found by the tests
* Reacted to other miscellaneous feedback on the RFC series.
Cheers! Garima Singh
[1] https://lore.kernel.org/git/[email protected]/
[2]
https://lore.kernel.org/git/[email protected]/
Derrick Stolee (2):
diff: halt tree-diff early after max_changes
commit-graph: examine commits by generation number
Garima Singh (8):
commit-graph: use MAX_NUM_CHUNKS
bloom: core Bloom filter implementation for changed paths
commit-graph: compute Bloom filters for changed paths
commit-graph: write Bloom filters to commit graph file
commit-graph: reuse existing Bloom filters during write.
commit-graph: add --changed-paths option to write subcommand revision.c: use Bloom filters to speed up path based revision walks
commit-graph: add GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS test flag
Jeff King (1):
commit-graph: examine changed-path objects in pack order
Documentation/git-commit-graph.txt | 5 + .../technical/commit-graph-format.txt | 24 ++ Makefile | 2 + bloom.c | 277 ++++++++++++++++++ bloom.h | 58 ++++ builtin/commit-graph.c | 10 +- ci/run-build-and-tests.sh | 1 + commit-graph.c | 211 ++++++++++++- commit-graph.h | 9 +- diff.h | 5 + revision.c | 124 +++++++- revision.h | 11 + t/README | 5 + t/helper/test-bloom.c | 84 ++++++ t/helper/test-read-graph.c | 4 + t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++ t/t4216-log-bloom.sh | 143 +++++++++ t/t5318-commit-graph.sh | 2 + t/t5324-split-commit-graph.sh | 1 + tree-diff.c | 6 + 22 files changed, 1088 insertions(+), 9 deletions(-) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh create mode 100755 t/t4216-log-bloom.sh
base-commit: 5b0ca878e008e82f91300091e793427205ce3544
Published-As: https://github.com/gitgitgadget/git/releases/tag/pr-497%2Fgarimasi514%2FcoreGit-bloomFilters-v2
Fetch-It-Via: git fetch https://github.com/gitgitgadget/git pr-497/garimasi514/coreGit-bloomFilters-v2
Pull-Request: https://github.com/gitgitgadget/git/pull/497
Range-diff vs v1:
3: a15f87fdcb = 1: bf6b93878a commit-graph: use MAX_NUM_CHUNKS
2: e52c7ad37a ! 2: 02b16d9422 commit-graph: write changed paths bloom filters
@@ -1,65 +1,72 @@
Author: Garima Singh <[email protected]>
- commit-graph: write changed paths bloom filters
+ bloom: core Bloom filter implementation for changed paths
- The changed path bloom filters help determine which paths changed between a
- commit and its first parent. We already have the "--changed-paths" option
- for the "git commit-graph write" subcommand, now actually compute them under
- that option. The COMMIT_GRAPH_WRITE_BLOOM_FILTERS flag enables this
- computation.
+ Add the core Bloom filter logic for computing the paths changed between a
+ commit and its first parent. For details on what Bloom filters are and how they
+ work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise
+ explaination of the adoption of Bloom filters as described in [2] and [3]
- RFC Notes: Here are some details about the implementation and I would love
- to know your thoughts and suggestions for improvements here.
+ 1. We currently use 7 and 10 for the number of hashes and the size of each
+ entry respectively. They served as great starting values, the mathematical
+ details behind this choice are described in [1] and [4]. The implementation
+ while not completely open to it at the moment, is flexible enough to allow
+ for tweaking these settings in the future.
- For details on what bloom filters are and how they work, please refer to
- Dr. Derrick Stolee's blog post [1].
- [1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-bloom-filters/
+ Note: The performance gains we have observed with these values are
+ significant enough that we did not need to tweak these settings.
+ The performance numbers are included in the cover letter of this series
+ and in the message of a subsequent commit where we use Bloom filters in
+ to speed up `git log -- <path>`.
- 1. The implementation sticks to the recommended values of 7 and 10 for the
- number of hashes and the size of each entry, as described in the blog.
- The implementation while not completely open to it at the moment, is flexible
- enough to allow for tweaking these settings in the future.
- Note: The performance gains we have observed so far with these values is
- significant enough to not that we did not need to tweak these settings.
- The cover letter of this series has the details and the commit where we have
- git log use bloom filters.
-
- 2. As described in the blog and the linked technical paper therin, we do not need
- 7 independent hashing functions. We use the Murmur3 hashing scheme - seed it
- twice and then combine those to procure an arbitrary number of hash values.
+ 2. As described in the blog and in [3], we do not need 7 independent hashing
+ functions. We use the Murmur3 hashing scheme. Seed it twice and then
+ combine those to procure an arbitrary number of hash values.
3. The filters are sized according to the number of changes in the each commit,
with minimum size of one 64 bit word.
- [Call for advice] We currently cap writing bloom filters for commits with
- atmost 512 changed files. In the current implementation, we compute the diff,
- and then just throw it away once we see it has more than 512 changes.
- Any suggestiongs on how to reduce the work we are doing in this case are more
- than welcome.
+ 4. We fill the Bloom filters as (const char *data, int len) pairs as
+ "struct bloom_filter"s in a commit slab.
- [Call for advice] Would the git community like this commit to be split up into
- more granular commits? This commit could possibly be split out further with the
- bloom.c code in its own commit, to be used by the commit-graph in a subsequent
- commit. While I prefer it being contained in one commit this way, I am open to
- suggestions.
+ 5. The seed_murmur3 method is implemented as described in [5]. It hashes the
+ given data using a given seed and produces a uniformly distributed hash
+ value.
- [Call for advice] Would a technical document explaining the exact details of
- the bloom filter implemenation and the hashing calculations be helpful? I will
- be adding details into Documentation/technical/commit-graph-format.txt, but the
- bloom filter code is an independent subsystem and could be used outside of the
- commit-graph feature. Is it worth a separate document, or should we apply "You
- Ain't Gonna Need It" principles?
+ [1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
- [Call for advice] I plan to add unit tests for bloom.c, specifically to ensure
- that the hash algorithm and bloom key calculations are stable across versions.
+ [2] Flavio Bonomi, Michael Mitzenmacher, Rina Panigrahy, Sushil Singh, George Varghese
+ "An Improved Construction for Counting Bloom Filters"
+ http://theory.stanford.edu/~rinap/papers/esa2006b.pdf
+ https://doi.org/10.1007/11841036_61
- Signed-off-by: Garima Singh <[email protected]>
+ [3] Peter C. Dillinger and Panagiotis Manolios
+ "Bloom Filters in Probabilistic Verification"
+ http://www.ccs.neu.edu/home/pete/pub/Bloom-filters-verification.pdf
+ https://doi.org/10.1007/978-3-540-30494-4_26
+
+ [4] Thomas Mueller Graf, Daniel Lemire
+ "Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters"
+ https://arxiv.org/abs/1912.08258
+
+ [5] https://en.wikipedia.org/wiki/MurmurHash#Algorithm
+
+ Helped-by: Jeff King <[email protected]>
Helped-by: Derrick Stolee <[email protected]>
+ Signed-off-by: Garima Singh <[email protected]>
diff --git a/Makefile b/Makefile
--- a/Makefile
+++ b/Makefile
@@
+
+ PROGRAMS += $(patsubst %.o,git-%$X,$(PROGRAM_OBJS))
+
++TEST_BUILTINS_OBJS += test-bloom.o
+ TEST_BUILTINS_OBJS += test-chmtime.o
+ TEST_BUILTINS_OBJS += test-config.o
+ TEST_BUILTINS_OBJS += test-ctype.o
+@@
LIB_OBJS += bisect.o
LIB_OBJS += blame.o
LIB_OBJS += blob.o
@@ -82,8 +89,6 @@
+#include "revision.h"
+#include "hashmap.h"
+
-+#define BITS_PER_BLOCK 64
-+
+define_commit_slab(bloom_filter_slab, struct bloom_filter);
+
+struct bloom_filter_slab bloom_filters;
@@ -100,12 +105,18 @@
+ return ((value >> count) | (value << ((-count) & mask)));
+}
+
++/*
++ * Calculate a hash value for the given data using the given seed.
++ * Produces a uniformly distributed hash value.
++ * Not considered to be cryptographically secure.
++ * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
++ **/
+static uint32_t seed_murmur3(uint32_t seed, const char *data, int len)
+{
+ const uint32_t c1 = 0xcc9e2d51;
+ const uint32_t c2 = 0x1b873593;
-+ const int32_t r1 = 15;
-+ const int32_t r2 = 13;
++ const uint32_t r1 = 15;
++ const uint32_t r2 = 13;
+ const uint32_t m = 5;
+ const uint32_t n = 0xe6546b64;
+ int i;
@@ -159,66 +170,67 @@
+
+static inline uint64_t get_bitmask(uint32_t pos)
+{
-+ return ((uint64_t)1) << (pos & (BITS_PER_BLOCK - 1));
++ return ((uint64_t)1) << (pos & (BITS_PER_WORD - 1));
++}
++
++void load_bloom_filters(void)
++{
++ init_bloom_filter_slab(&bloom_filters);
+}
+
+void fill_bloom_key(const char *data,
-+ int len,
-+ struct bloom_key *key,
-+ struct bloom_filter_settings *settings)
++ int len,
++ struct bloom_key *key,
++ struct bloom_filter_settings *settings)
+{
+ int i;
-+ uint32_t seed0 = 0x293ae76f;
-+ uint32_t seed1 = 0x7e646e2c;
-+
-+ uint32_t hash0 = seed_murmur3(seed0, data, len);
-+ uint32_t hash1 = seed_murmur3(seed1, data, len);
++ const uint32_t seed0 = 0x293ae76f;
++ const uint32_t seed1 = 0x7e646e2c;
++ const uint32_t hash0 = seed_murmur3(seed0, data, len);
++ const uint32_t hash1 = seed_murmur3(seed1, data, len);
+
+ key->hashes = (uint32_t *)xcalloc(settings->num_hashes, sizeof(uint32_t));
+ for (i = 0; i < settings->num_hashes; i++)
+ key->hashes[i] = hash0 + i * hash1;
+}
+
-+static void add_key_to_filter(struct bloom_key *key,
-+ struct bloom_filter *filter,
-+ struct bloom_filter_settings *settings)
++void add_key_to_filter(struct bloom_key *key,
++ struct bloom_filter *filter,
++ struct bloom_filter_settings *settings)
+{
+ int i;
-+ uint64_t mod = filter->len * BITS_PER_BLOCK;
++ uint64_t mod = filter->len * BITS_PER_WORD;
+
+ for (i = 0; i < settings->num_hashes; i++) {
+ uint64_t hash_mod = key->hashes[i] % mod;
-+ uint64_t block_pos = hash_mod / BITS_PER_BLOCK;
++ uint64_t block_pos = hash_mod / BITS_PER_WORD;
+
+ filter->data[block_pos] |= get_bitmask(hash_mod);
+ }
+}
+
-+void load_bloom_filters(void)
-+{
-+ init_bloom_filter_slab(&bloom_filters);
-+}
-+
+struct bloom_filter *get_bloom_filter(struct repository *r,
+ struct commit *c)
+{
+ struct bloom_filter *filter;
+ struct bloom_filter_settings settings = DEFAULT_BLOOM_FILTER_SETTINGS;
+ int i;
-+ struct rev_info revs;
-+ const char *revs_argv[] = {NULL, "HEAD", NULL};
++ struct diff_options diffopt;
++
++ if (!bloom_filters.slab_size)
++ return NULL;
+
+ filter = bloom_filter_slab_at(&bloom_filters, c);
-+ init_revisions(&revs, NULL);
-+ revs.diffopt.flags.recursive = 1;
+
-+ setup_revisions(2, revs_argv, &revs, NULL);
++ repo_diff_setup(r, &diffopt);
++ diffopt.flags.recursive = 1;
++ diff_setup_done(&diffopt);
+
+ if (c->parents)
-+ diff_tree_oid(&c->parents->item->object.oid, &c->object.oid, "", &revs.diffopt);
++ diff_tree_oid(&c->parents->item->object.oid, &c->object.oid, "", &diffopt);
+ else
-+ diff_tree_oid(NULL, &c->object.oid, "", &revs.diffopt);
-+ diffcore_std(&revs.diffopt);
++ diff_tree_oid(NULL, &c->object.oid, "", &diffopt);
++ diffcore_std(&diffopt);
+
+ if (diff_queued_diff.nr <= 512) {
+ struct hashmap pathmap;
@@ -227,18 +239,18 @@
+ hashmap_init(&pathmap, NULL, NULL, 0);
+
+ for (i = 0; i < diff_queued_diff.nr; i++) {
-+ const char* path = diff_queued_diff.queue[i]->two->path;
-+ const char* p = path;
-+
-+ /*
-+ * Add each leading directory of the changed file, i.e. for
-+ * 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so
-+ * the Bloom filter could be used to speed up commands like
-+ * 'git log dir/subdir', too.
-+ *
-+ * Note that directories are added without the trailing '/'.
-+ */
-+ do {
++ const char* path = diff_queued_diff.queue[i]->two->path;
++ const char* p = path;
++
++ /*
++ * Add each leading directory of the changed file, i.e. for
++ * 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so
++ * the Bloom filter could be used to speed up commands like
++ * 'git log dir/subdir', too.
++ *
++ * Note that directories are added without the trailing '/'.
++ */
++ do {
+ char* last_slash = strrchr(p, '/');
+
+ FLEX_ALLOC_STR(e, path, path);
@@ -246,25 +258,27 @@
+ hashmap_add(&pathmap, &e->entry);
+
+ if (!last_slash)
-+ last_slash = (char*)p;
++ last_slash = (char*)p;
+ *last_slash = '\0';
+
-+ } while (*p);
++ } while (*p);
+
-+ diff_free_filepair(diff_queued_diff.queue[i]);
++ diff_free_filepair(diff_queued_diff.queue[i]);
+ }
+
-+ filter->len = (hashmap_get_size(&pathmap) * settings.bits_per_entry + BITS_PER_BLOCK - 1) / BITS_PER_BLOCK;
++ filter->len = (hashmap_get_size(&pathmap) * settings.bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
+ filter->data = xcalloc(filter->len, sizeof(uint64_t));
+
+ hashmap_for_each_entry(&pathmap, &iter, e, entry) {
-+ struct bloom_key key;
-+ fill_bloom_key(e->path, strlen(e->path), &key, &settings);
-+ add_key_to_filter(&key, filter, &settings);
++ struct bloom_key key;
++ fill_bloom_key(e->path, strlen(e->path), &key, &settings);
++ add_key_to_filter(&key, filter, &settings);
+ }
+
+ hashmap_free_entries(&pathmap, struct pathmap_hash_entry, entry);
+ } else {
++ for (i = 0; i < diff_queued_diff.nr; i++)
++ diff_free_filepair(diff_queued_diff.queue[i]);
+ filter->data = NULL;
+ filter->len = 0;
+ }
@@ -274,7 +288,26 @@
+
+ return filter;
+}
- \ No newline at end of file
++
++int bloom_filter_contains(struct bloom_filter *filter,
++ struct bloom_key *key,
++ struct bloom_filter_settings *settings)
++{
++ int i;
++ uint64_t mod = filter->len * BITS_PER_WORD;
++
++ if (!mod)
++ return -1;
++
++ for (i = 0; i < settings->num_hashes; i++) {
++ uint64_t hash_mod = key->hashes[i] % mod;
++ uint64_t block_pos = hash_mod / BITS_PER_WORD;
++ if (!(filter->data[block_pos] & get_bitmask(hash_mod)))
++ return 0;
++ }
++
++ return 1;
++}
diff --git a/bloom.h b/bloom.h
new file mode 100644
@@ -286,6 +319,7 @@
+
+struct commit;
+struct repository;
++struct commit_graph;
+
+struct bloom_filter_settings {
+ uint32_t hash_version;
@@ -294,6 +328,7 @@
+};
+
+#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 }
++#define BITS_PER_WORD 64
+
+/*
+ * A bloom_filter struct represents a data segment to
@@ -318,85 +353,253 @@
+
+void load_bloom_filters(void);
+
-+struct bloom_filter *get_bloom_filter(struct repository *r,
-+ struct commit *c);
-+
+void fill_bloom_key(const char *data,
+ int len,
+ struct bloom_key *key,
+ struct bloom_filter_settings *settings);
+
++void add_key_to_filter(struct bloom_key *key,
++ struct bloom_filter *filter,
++ struct bloom_filter_settings *settings);
++
++struct bloom_filter *get_bloom_filter(struct repository *r,
++ struct commit *c);
++
++int bloom_filter_contains(struct bloom_filter *filter,
++ struct bloom_key *key,
++ struct bloom_filter_settings *settings);
++
+#endif
- diff --git a/commit-graph.c b/commit-graph.c
- --- a/commit-graph.c
- +++ b/commit-graph.c
+ diff --git a/t/helper/test-bloom.c b/t/helper/test-bloom.c
+ new file mode 100644
+ --- /dev/null
+ +++ b/t/helper/test-bloom.c
@@
- #include "hashmap.h"
- #include "replace-object.h"
- #include "progress.h"
++#include "test-tool.h"
++#include "git-compat-util.h"
+#include "bloom.h"
-
- #define GRAPH_SIGNATURE 0x43475048 /* "CGPH" */
- #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446 /* "OIDF" */
-@@
- unsigned append:1,
- report_progress:1,
- split:1,
-- check_oids:1;
-+ check_oids:1,
-+ bloom:1;
-
- const struct split_commit_graph_opts *split_opts;
-+ uint32_t total_bloom_filter_size;
- };
-
- static void write_graph_chunk_fanout(struct hashfile *f,
-@@
- stop_progress(&ctx->progress);
- }
-
-+static void compute_bloom_filters(struct write_commit_graph_context *ctx)
-+{
-+ int i;
-+ struct progress *progress = NULL;
++#include "test-tool.h"
++#include "cache.h"
++#include "commit-graph.h"
++#include "commit.h"
++#include "config.h"
++#include "object-store.h"
++#include "object.h"
++#include "repository.h"
++#include "tree.h"
+
-+ load_bloom_filters();
++struct bloom_filter_settings settings = DEFAULT_BLOOM_FILTER_SETTINGS;
+
-+ if (ctx->report_progress)
-+ progress = start_progress(
-+ _("Computing commit diff Bloom filters"),
-+ ctx->commits.nr);
++static void print_bloom_filter(struct bloom_filter *filter) {
++ int i;
+
-+ for (i = 0; i < ctx->commits.nr; i++) {
-+ struct commit *c = ctx->commits.list[i];
-+ struct bloom_filter *filter = get_bloom_filter(ctx->r, c);
-+ ctx->total_bloom_filter_size += sizeof(uint64_t) * filter->len;
-+ display_progress(progress, i + 1);
++ if (!filter) {
++ printf("No filter.\n");
++ return;
++ }
++ printf("Filter_Length:%d\n", filter->len);
++ printf("Filter_Data:");
++ for (i = 0; i < filter->len; i++){
++ printf("%"PRIx64"|", filter->data[i]);
+ }
++ printf("\n");
++}
++
++static void add_string_to_filter(const char *data, struct bloom_filter *filter) {
++ struct bloom_key key;
++ int i;
++
++ fill_bloom_key(data, strlen(data), &key, &settings);
++ printf("Hashes:");
++ for (i = 0; i < settings.num_hashes; i++){
++ printf("%08x|", key.hashes[i]);
++ }
++ printf("\n");
++ add_key_to_filter(&key, filter, &settings);
++}
+
-+ stop_progress(&progress);
++static void get_bloom_filter_for_commit(const struct object_id *commit_oid)
++{
++ struct commit *c;
++ struct bloom_filter *filter;
++ setup_git_directory();
++ c = lookup_commit(the_repository, commit_oid);
++ filter = get_bloom_filter(the_repository, c);
++ print_bloom_filter(filter);
+}
+
- static int add_ref_to_list(const char *refname,
- const struct object_id *oid,
- int flags, void *cb_data)
++int cmd__bloom(int argc, const char **argv)
++{
++ if (!strcmp(argv[1], "generate_filter")) {
++ struct bloom_filter filter;
++ int i = 2;
++ filter.len = (settings.bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
++ filter.data = xcalloc(filter.len, sizeof(uint64_t));
++
++ if (!argv[2]){
++ die("at least one input string expected");
++ }
++
++ while (argv[i]) {
++ add_string_to_filter(argv[i], &filter);
++ i++;
++ }
++
++ print_bloom_filter(&filter);
++ }
++
++ if (!strcmp(argv[1], "get_filter_for_commit")) {
++ struct object_id oid;
++ const char *end;
++ if (parse_oid_hex(argv[2], &oid, &end))
++ die("cannot parse oid '%s'", argv[2]);
++ load_bloom_filters();
++ get_bloom_filter_for_commit(&oid);
++ }
++
++ return 0;
++}
+
+ diff --git a/t/helper/test-tool.c b/t/helper/test-tool.c
+ --- a/t/helper/test-tool.c
+ +++ b/t/helper/test-tool.c
@@
- ctx->split = flags & COMMIT_GRAPH_WRITE_SPLIT ? 1 : 0;
- ctx->check_oids = flags & COMMIT_GRAPH_WRITE_CHECK_OIDS ? 1 : 0;
- ctx->split_opts = split_opts;
-+ ctx->bloom = flags & COMMIT_GRAPH_WRITE_BLOOM_FILTERS ? 1 : 0;
-+ ctx->total_bloom_filter_size = 0;
+ };
- if (ctx->split) {
- struct commit_graph *g;
+ static struct test_cmd cmds[] = {
++ { "bloom", cmd__bloom },
+ { "chmtime", cmd__chmtime },
+ { "config", cmd__config },
+ { "ctype", cmd__ctype },
+
+ diff --git a/t/helper/test-tool.h b/t/helper/test-tool.h
+ --- a/t/helper/test-tool.h
+ +++ b/t/helper/test-tool.h
@@
+ #define USE_THE_INDEX_COMPATIBILITY_MACROS
+ #include "git-compat-util.h"
- compute_generation_numbers(ctx);
-
-+ if (ctx->bloom)
-+ compute_bloom_filters(ctx);
-+
- res = write_commit_graph_file(ctx);
-
- if (ctx->split)
++int cmd__bloom(int argc, const char **argv);
+ int cmd__chmtime(int argc, const char **argv);
+ int cmd__config(int argc, const char **argv);
+ int cmd__ctype(int argc, const char **argv);
+
+ diff --git a/t/t0095-bloom.sh b/t/t0095-bloom.sh
+ new file mode 100755
+ --- /dev/null
+ +++ b/t/t0095-bloom.sh
+@@
++#!/bin/sh
++
++test_description='test bloom.c'
++. ./test-lib.sh
++
++test_expect_success 'get bloom filters for commit with no changes' '
++ git init &&
++ git commit --allow-empty -m "c0" &&
++ cat >expect <<-\EOF &&
++ Filter_Length:0
++ Filter_Data:
++ EOF
++ test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'get bloom filter for commit with 10 changes' '
++ rm actual &&
++ rm expect &&
++ mkdir smallDir &&
++ for i in $(test_seq 0 9)
++ do
++ echo $i >smallDir/$i
++ done &&
++ git add smallDir &&
++ git commit -m "commit with 10 changes" &&
++ cat >expect <<-\EOF &&
++ Filter_Length:4
++ Filter_Data:508928809087080a|8a7648210804001|4089824400951000|841ab310098051a8|
++ EOF
++ test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success EXPENSIVE 'get bloom filter for commit with 513 changes' '
++ rm actual &&
++ rm expect &&
++ mkdir bigDir &&
++ for i in $(test_seq 0 512)
++ do
++ echo $i >bigDir/$i
++ done &&
++ git add bigDir &&
++ git commit -m "commit with 513 changes" &&
++ cat >expect <<-\EOF &&
++ Filter_Length:0
++ Filter_Data:
++ EOF
++ test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for empty string' '
++ cat >expect <<-\EOF &&
++ Hashes:5615800c|5b966560|61174ab4|66983008|6c19155c|7199fab0|771ae004|
++ Filter_Length:1
++ Filter_Data:11000110001110|
++ EOF
++ test-tool bloom generate_filter "" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for whitespace' '
++ cat >expect <<-\EOF &&
++ Hashes:1bf014e6|8a91b50b|f9335530|67d4f555|d676957a|4518359f|b3b9d5c4|
++ Filter_Length:1
++ Filter_Data:401004080200810|
++ EOF
++ test-tool bloom generate_filter " " >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for a root level folder' '
++ cat >expect <<-\EOF &&
++ Hashes:1a21016f|fff1c06d|e5c27f6b|cb933e69|b163fd67|9734bc65|7d057b63|
++ Filter_Length:1
++ Filter_Data:aaa800000000|
++ EOF
++ test-tool bloom generate_filter "A" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for a root level file' '
++ cat >expect <<-\EOF &&
++ Hashes:e2d51107|30970605|7e58fb03|cc1af001|19dce4ff|679ed9fd|b560cefb|
++ Filter_Length:1
++ Filter_Data:a8000000000000aa|
++ EOF
++ test-tool bloom generate_filter "file.txt" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for a deep folder' '
++ cat >expect <<-\EOF &&
++ Hashes:864cf838|27f055cd|c993b362|6b3710f7|0cda6e8c|ae7dcc21|502129b6|
++ Filter_Length:1
++ Filter_Data:1c0000600003000|
++ EOF
++ test-tool bloom generate_filter "A/B/C/D/E" >actual &&
++ test_cmp expect actual
++'
++
++test_expect_success 'compute bloom key for a deep file' '
++ cat >expect <<-\EOF &&
++ Hashes:07cdf850|4af629c7|8e1e5b3e|d1468cb5|146ebe2c|5796efa3|9abf211a|
++ Filter_Length:1
++ Filter_Data:4020100804010080|
++ EOF
++ test-tool bloom generate_filter "A/B/C/D/E/file.txt" >actual &&
++ test_cmp expect actual
++'
++
++test_done
-: ---------- > 3: a698c04a78 diff: halt tree-diff early after max_changes
-: ---------- > 4: c17bbcbc66 commit-graph: compute Bloom filters for changed paths
-: ---------- > 5: 78e8e49c3a commit-graph: examine changed-path objects in pack order
-: ---------- > 6: 58704d81b6 commit-graph: examine commits by generation number
5: 7648021072 ! 7: 39ee061080 commit-graph: write changed path bloom filters to commit-graph file.
@@ -1,23 +1,67 @@
Author: Garima Singh <[email protected]>
- commit-graph: write changed path bloom filters to commit-graph file.
+ commit-graph: write Bloom filters to commit graph file
- Write bloom filters to the commit-graph using the format described in
- Documentation/technical/commit-graph-format.txt
+ Update the technical documentation for commit-graph-format with the formats for
+ the Bloom filter index (BIDX) and Bloom filter data (BDAT) chunks. Write the
+ computed Bloom filters information to the commit graph file using this format.
Helped-by: Derrick Stolee <[email protected]>
Signed-off-by: Garima Singh <[email protected]>
+ diff --git a/Documentation/technical/commit-graph-format.txt b/Documentation/technical/commit-graph-format.txt
+ --- a/Documentation/technical/commit-graph-format.txt
+ +++ b/Documentation/technical/commit-graph-format.txt
+@@
+ - The parents of the commit, stored using positional references within
+ the graph file.
+
++- The Bloom filter of the commit carrying the paths that were changed between
++ the commit and its first parent.
++
+ These positional references are stored as unsigned 32-bit integers
+ corresponding to the array position within the list of commit OIDs. Due
+ to some special constants we use to track parents, we can store at most
+@@
+ positions for the parents until reaching a value with the most-significant
+ bit on. The other bits correspond to the position of the last parent.
+
++ Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) (N * 4 bytes) [Optional]
++ * The ith entry, BIDX[i], stores the number of 8-byte word blocks in all
++ Bloom filters from commit 0 to commit i (inclusive) in lexicographic
++ order. The Bloom filter for the i-th commit spans from BIDX[i-1] to
++ BIDX[i] (plus header length), where BIDX[-1] is 0.
++ * The BIDX chunk is ignored if the BDAT chunk is not present.
++
++ Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
++ * It starts with header consisting of three unsigned 32-bit integers:
++ - Version of the hash algorithm being used. We currently only support
++ value 1 which implies the murmur3 hash implemented exactly as described
++ in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
++ - The number of times a path is hashed and hence the number of bit positions
++ that cumulatively determine whether a file is present in the commit.
++ - The minimum number of bits 'b' per entry in the Bloom filter. If the filter
++ contains 'n' entries, then the filter size is the minimum number of 64-bit
++ words that contain n*b bits.
++ * The rest of the chunk is the concatenation of all the computed Bloom
++ filters for the commits in lexicographic order.
++ * The BDAT chunk is present iff BIDX is present.
++
+ Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional]
+ This list of H-byte hashes describe a set of B commit-graph files that
+ form a commit-graph chain. The graph position for the ith commit in this
+
diff --git a/commit-graph.c b/commit-graph.c
--- a/commit-graph.c
+++ b/commit-graph.c
@@
+ #define GRAPH_CHUNKID_OIDLOOKUP 0x4f49444c /* "OIDL" */
#define GRAPH_CHUNKID_DATA 0x43444154 /* "CDAT" */
#define GRAPH_CHUNKID_EXTRAEDGES 0x45444745 /* "EDGE" */
- #define GRAPH_CHUNKID_BASE 0x42415345 /* "BASE" */
--#define MAX_NUM_CHUNKS 5
+#define GRAPH_CHUNKID_BLOOMINDEXES 0x42494458 /* "BIDX" */
+#define GRAPH_CHUNKID_BLOOMDATA 0x42444154 /* "BDAT" */
+ #define GRAPH_CHUNKID_BASE 0x42415345 /* "BASE" */
+-#define MAX_NUM_CHUNKS 5
+#define MAX_NUM_CHUNKS 7
#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)
@@ -46,15 +90,33 @@
+ if (hash_version != 1)
+ break;
+
-+ graph->settings = xmalloc(sizeof(struct bloom_filter_settings));
-+ graph->settings->hash_version = hash_version;
-+ graph->settings->num_hashes = get_be32(data + chunk_offset + 4);
-+ graph->settings->bits_per_entry = get_be32(data + chunk_offset + 8);
++ graph->bloom_filter_settings = xmalloc(sizeof(struct bloom_filter_settings));
++ graph->bloom_filter_settings->hash_version = hash_version;
++ graph->bloom_filter_settings->num_hashes = get_be32(data + chunk_offset + 4);
++ graph->bloom_filter_settings->bits_per_entry = get_be32(data + chunk_offset + 8);
+ }
+ break;
}
if (chunk_repeated) {
+@@
+ last_chunk_offset = chunk_offset;
+ }
+
++ /* We need both the bloom chunks to exist together. Else ignore the data */
++ if ((graph->chunk_bloom_indexes && !graph->chunk_bloom_data)
++ || (!graph->chunk_bloom_indexes && graph->chunk_bloom_data)) {
++ graph->chunk_bloom_indexes = NULL;
++ graph->chunk_bloom_data = NULL;
++ graph->bloom_filter_settings = NULL;
++ }
++
++ if (graph->chunk_bloom_indexes && graph->chunk_bloom_data)
++ load_bloom_filters();
++
+ hashcpy(graph->oid.hash, graph->data + graph->data_len - graph->hash_len);
+
+ if (verify_commit_graph_lite(graph)) {
@@
}
}
@@ -65,36 +127,67 @@
+ struct commit **list = ctx->commits.list;
+ struct commit **last = ctx->commits.list + ctx->commits.nr;
+ uint32_t cur_pos = 0;
++ struct progress *progress = NULL;
++ int i = 0;
++
++ if (ctx->report_progress)
++ progress = start_delayed_progress(
++ _("Writing changed paths Bloom filters index"),
++ ctx->commits.nr);
+
+ while (list < last) {
+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list);
+ cur_pos += filter->len;
++ display_progress(progress, ++i);
+ hashwrite_be32(f, cur_pos);
+ list++;
+ }
++
++ stop_progress(&progress);
+}
+
+static void write_graph_chunk_bloom_data(struct hashfile *f,
+ struct write_commit_graph_context *ctx,
+ struct bloom_filter_settings *settings)
+{
-+ struct commit **first = ctx->commits.list;
++ struct commit **list = ctx->commits.list;
+ struct commit **last = ctx->commits.list + ctx->commits.nr;
++ struct progress *progress = NULL;
++ int i = 0;
++
++ if (ctx->report_progress)
++ progress = start_delayed_progress(
++ _("Writing changed paths Bloom filters data"),
++ ctx->commits.nr);
+
+ hashwrite_be32(f, settings->hash_version);
+ hashwrite_be32(f, settings->num_hashes);
+ hashwrite_be32(f, settings->bits_per_entry);
+
-+ while (first < last) {
-+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *first);
++ while (list < last) {
++ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list);
++ display_progress(progress, ++i);
+ hashwrite(f, filter->data, filter->len * sizeof(uint64_t));
-+ first++;
++ list++;
+ }
++
++ stop_progress(&progress);
+}
+
static int oid_compare(const void *_a, const void *_b)
{
const struct object_id *a = (const struct object_id *)_a;
+@@
+ load_bloom_filters();
+
+ if (ctx->report_progress)
+- progress = start_progress(
+- _("Computing commit diff Bloom filters"),
++ progress = start_delayed_progress(
++ _("Computing changed paths Bloom filters"),
+ ctx->commits.nr);
+
+ ALLOC_ARRAY(sorted_by_pos, ctx->commits.nr);
@@
struct strbuf progress_title = STRBUF_INIT;
int num_chunks = 3;
@@ -107,7 +200,7 @@
chunk_ids[num_chunks] = GRAPH_CHUNKID_EXTRAEDGES;
num_chunks++;
}
-+ if (ctx->bloom) {
++ if (ctx->changed_paths) {
+ chunk_ids[num_chunks] = GRAPH_CHUNKID_BLOOMINDEXES;
+ num_chunks++;
+ chunk_ids[num_chunks] = GRAPH_CHUNKID_BLOOMDATA;
@@ -120,11 +213,13 @@
4 * ctx->num_extra_edges;
num_chunks++;
}
-+ if (ctx->bloom) {
-+ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] + sizeof(uint32_t) * ctx->commits.nr;
++ if (ctx->changed_paths) {
++ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] +
++ sizeof(uint32_t) * ctx->commits.nr;
+ num_chunks++;
+
-+ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] + sizeof(uint32_t) * 3 + ctx->total_bloom_filter_size;
++ chunk_offsets[num_chunks + 1] = chunk_offsets[num_chunks] +
++ sizeof(uint32_t) * 3 + ctx->total_bloom_filter_data_size;
+ num_chunks++;
+ }
if (ctx->num_commit_graphs_after > 1) {
@@ -134,7 +229,7 @@
write_graph_chunk_data(f, hashsz, ctx);
if (ctx->num_extra_edges)
write_graph_chunk_extra_edges(f, ctx);
-+ if (ctx->bloom) {
++ if (ctx->changed_paths) {
+ write_graph_chunk_bloom_indexes(f, ctx);
+ write_graph_chunk_bloom_data(f, ctx, &bloom_settings);
+ }
@@ -160,7 +255,16 @@
+ const unsigned char *chunk_bloom_indexes;
+ const unsigned char *chunk_bloom_data;
+
-+ struct bloom_filter_settings *settings;
++ struct bloom_filter_settings *bloom_filter_settings;
};
struct commit_graph *load_commit_graph_one_fd_st(int fd, struct stat *st);
+@@
+ COMMIT_GRAPH_WRITE_SPLIT = (1 << 2),
+ /* Make sure that each OID in the input is a valid commit OID. */
+ COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 << 3),
+- COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4)
++ COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4),
+ };
+
+ struct split_commit_graph_opts {
7: 1e2acb37ad ! 8: b20c8d2b20 commit-graph: reuse existing bloom filters during write.
@@ -1,27 +1,31 @@
Author: Garima Singh <[email protected]>
- commit-graph: reuse existing bloom filters during write.
+ commit-graph: reuse existing Bloom filters during write.
- Read previously computed bloom filters from the commit-graph file if possible
- to avoid recomputing during commit-graph write.
+ Read previously computed Bloom filters from the commit-graph file if
+ possible to avoid recomputing during commit-graph write.
- Reading from the commit-graph is based on the format in which bloom filters are
- written in the commit graph file. See method `fill_filter_from_graph` in bloom.c
+ See Documentation/technical/commit-graph-format for the format in which
+ the Bloom filter information is written to the commit graph file.
- For reading the bloom filter for commit at lexicographic position i:
- 1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter
- of commit i+1 (called the next_index in the code)
+ To read Bloom filter for a given commit with lexicographic position
+ 'i' we need to:
+ 1. Read BIDX[i] which essentially gives us the starting index in BDAT for
+ filter of commit i+1. It is essentially the index past the end
+ of the filter of commit i. It is called end_index in the code.
- 2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for
- filter of commit i (called the prev_index in the code)
- For i = 0, prev_index will be 0. The first lexicographic commit's filter will
- start at BDAT.
+ 2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT
+ for filter of commit i. It is called the start_index in the code.
+ For the first commit, where i = 0, Bloom filter data starts at the
+ beginning, just past the header in the BDAT chunk. Hence, start_index
+ will be 0.
- 3. The length of the filter will be next_index - prev_index, because BIDX[i]
- gives the cumulative 8-byte words including the ith commit's filter.
+ 3. The length of the filter will be end_index - start_index, because
+ BIDX[i] gives the cumulative 8-byte words including the ith
+ commit's filter.
- We toggle whether bloom filters should be recomputed based on the compute_if_null
- flag.
+ We toggle whether Bloom filters should be recomputed based on the
+ compute_if_null flag.
Helped-by: Derrick Stolee <[email protected]>
Signed-off-by: Garima Singh <[email protected]>
@@ -41,107 +45,135 @@
}
}
-+static void fill_filter_from_graph(struct commit_graph *g,
++static int load_bloom_filter_from_graph(struct commit_graph *g,
+ struct bloom_filter *filter,
+ struct commit *c)
+{
-+ uint32_t lex_pos, prev_index, next_index;
++ uint32_t lex_pos, start_index, end_index;
+
+ while (c->graph_pos < g->num_commits_in_base)
+ g = g->base_graph;
+
++ /* The commit graph commit 'c' lives in doesn't carry bloom filters. */
++ if (!g->chunk_bloom_indexes)
++ return 0;
++
+ lex_pos = c->graph_pos - g->num_commits_in_base;
+
-+ next_index = get_be32(g->chunk_bloom_indexes + 4 * lex_pos);
++ end_index = get_be32(g->chunk_bloom_indexes + 4 * lex_pos);
++
+ if (lex_pos)
-+ prev_index = get_be32(g->chunk_bloom_indexes + 4 * (lex_pos - 1));
++ start_index = get_be32(g->chunk_bloom_indexes + 4 * (lex_pos - 1));
+ else
-+ prev_index = 0;
++ start_index = 0;
+
-+ filter->len = next_index - prev_index;
-+ filter->data = (uint64_t *)(g->chunk_bloom_data + 8 * prev_index + 12);
++ filter->len = end_index - start_index;
++ filter->data = (uint64_t *)(g->chunk_bloom_data +
++ sizeof(uint64_t) * start_index +
++ BLOOMDATA_CHUNK_HEADER_SIZE);
++
++ return 1;
+}
+
- void load_bloom_filters(void)
- {
- init_bloom_filter_slab(&bloom_filters);
- }
-
struct bloom_filter *get_bloom_filter(struct repository *r,
- struct commit *c)
+ struct commit *c,
-+ int compute_if_null)
++ int compute_if_not_present)
{
struct bloom_filter *filter;
struct bloom_filter_settings settings = DEFAULT_BLOOM_FILTER_SETTINGS;
@@
- const char *revs_argv[] = {NULL, "HEAD", NULL};
filter = bloom_filter_slab_at(&bloom_filters, c);
-+
+
+ if (!filter->data) {
+ load_commit_graph_info(r, c);
-+ if (c->graph_pos != COMMIT_NOT_FROM_GRAPH && r->objects->commit_graph->chunk_bloom_indexes) {
-+ fill_filter_from_graph(r->objects->commit_graph, filter, c);
-+ return filter;
++ if (c->graph_pos != COMMIT_NOT_FROM_GRAPH &&
++ r->objects->commit_graph->chunk_bloom_indexes) {
++ if (load_bloom_filter_from_graph(r->objects->commit_graph, filter, c))
++ return filter;
++ else
++ return NULL;
+ }
+ }
+
-+ if (filter->data || !compute_if_null)
-+ return filter;
++ if (filter->data || !compute_if_not_present)
++ return filter;
+
- init_revisions(&revs, NULL);
- revs.diffopt.flags.recursive = 1;
-
-@@
- DIFF_QUEUE_CLEAR(&diff_queued_diff);
-
- return filter;
--}
- \ No newline at end of file
-+}
+ repo_diff_setup(r, &diffopt);
+ diffopt.flags.recursive = 1;
+ diffopt.max_changes = max_changes;
diff --git a/bloom.h b/bloom.h
--- a/bloom.h
+++ b/bloom.h
@@
- void load_bloom_filters(void);
+
+ #define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 }
+ #define BITS_PER_WORD 64
++#define BLOOMDATA_CHUNK_HEADER_SIZE 3*sizeof(uint32_t)
+
+ /*
+ * A bloom_filter struct represents a data segment to
+@@
+ struct bloom_filter_settings *settings);
struct bloom_filter *get_bloom_filter(struct repository *r,
- struct commit *c);
+ struct commit *c,
-+ int compute_if_null);
++ int compute_if_not_present);
- void fill_bloom_key(const char *data,
- int len,
+ int bloom_filter_contains(struct bloom_filter *filter,
+ struct bloom_key *key,
diff --git a/commit-graph.c b/commit-graph.c
--- a/commit-graph.c
+++ b/commit-graph.c
@@
- uint32_t cur_pos = 0;
+ ctx->commits.nr);
while (list < last) {
- struct bloom_filter *filter = get_bloom_filter(ctx->r, *list);
+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list, 0);
cur_pos += filter->len;
+ display_progress(progress, ++i);
hashwrite_be32(f, cur_pos);
- list++;
@@
hashwrite_be32(f, settings->bits_per_entry);
- while (first < last) {
-- struct bloom_filter *filter = get_bloom_filter(ctx->r, *first);
-+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *first, 0);
+ while (list < last) {
+- struct bloom_filter *filter = get_bloom_filter(ctx->r, *list);
++ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list, 0);
+ display_progress(progress, ++i);
hashwrite(f, filter->data, filter->len * sizeof(uint64_t));
- first++;
- }
+ list++;
@@
for (i = 0; i < ctx->commits.nr; i++) {
- struct commit *c = ctx->commits.list[i];
+ struct commit *c = sorted_by_pos[i];
- struct bloom_filter *filter = get_bloom_filter(ctx->r, c);
+ struct bloom_filter *filter = get_bloom_filter(ctx->r, c, 1);
- ctx->total_bloom_filter_size += sizeof(uint64_t) * filter->len;
+ ctx->total_bloom_filter_data_size += sizeof(uint64_t) * filter->len;
display_progress(progress, i + 1);
}
+@@
+ g->data = NULL;
+ close(g->graph_fd);
+ }
++ free(g->bloom_filter_settings);
+ free(g->filename);
+ free(g);
+ }
+
+ diff --git a/t/helper/test-bloom.c b/t/helper/test-bloom.c
+ --- a/t/helper/test-bloom.c
+ +++ b/t/helper/test-bloom.c
+@@
+ struct bloom_filter *filter;
+ setup_git_directory();
+ c = lookup_commit(the_repository, commit_oid);
+- filter = get_bloom_filter(the_repository, c);
++ filter = get_bloom_filter(the_repository, c, 1);
+ print_bloom_filter(filter);
+ }
+ 1: 6bdde5e4f0 ! 9: 3d7ee0c969 commit-graph: add --changed-paths option to write
@@ -1,26 +1,13 @@
Author: Garima Singh <[email protected]>
- commit-graph: add --changed-paths option to write
+ commit-graph: add --changed-paths option to write subcommand
Add --changed-paths option to git commit-graph write. This option will
- soon allow users to compute bloom filters for the paths changed between
- a commit and its first significant parent, and write this information
- into the commit-graph file.
-
- Note: This commit does not change any behavior. It only introduces
- the option and passes down the appropriate flag to the commit-graph.
-
- RFC Notes:
- 1. We named the option --changed-paths to capture what the option does,
- instead of how it does it. The current implementation does this
- using bloom filters. We believe using --changed-paths however keeps
- the implementation open to other data structures.
- All thoughts and suggestions for the name and this approach are
- welcome
-
- 2. Currently, a subsequent commit in this series will add tests that
- exercise this option. I plan to split that test commit across the
- series as appropriate.
+ allow users to compute information about the paths that have changed
+ between a commit and its first parent, and write it into the commit graph
+ file. If the option is passed to the write subcommand we set the
+ COMMIT_GRAPH_WRITE_BLOOM_FILTERS flag and pass it down to the
+ commit-graph logic.
@@ -35,7 +22,7 @@
+With the --changed-paths option, compute and write information about the +paths changed between a commit and it's first parent. This operation can +take a while on large repositories. It provides significant performance gains
-+for getting file based history logs with git log
++for getting history of a directory or a file with git log -- <path>.
++
With the --split option, write the commit-graph as a chain of multiple commit-graph files stored in <dir>/info/commit-graphs. The new commits
@@ -66,7 +53,7 @@
int split;
int shallow;
int progress;
-+ int enable_bloom_filters;
++ int enable_changed_paths;
} opts;
static int graph_verify(int argc, const char **argv)
@@ -74,7 +61,7 @@
N_("start walk at commits listed by stdin")),
OPT_BOOL(0, "append", &opts.append,
N_("include all commits already in the commit-graph file")),
-+ OPT_BOOL(0, "changed-paths", &opts.enable_bloom_filters,
++ OPT_BOOL(0, "changed-paths", &opts.enable_changed_paths,
+ N_("enable computation for changed paths")),
OPT_BOOL(0, "progress", &opts.progress, N_("force progress reporting")), OPT_BOOL(0, "split", &opts.split,
@@ -83,22 +70,8 @@
flags |= COMMIT_GRAPH_WRITE_SPLIT;
if (opts.progress)
flags |= COMMIT_GRAPH_WRITE_PROGRESS;
-+ if (opts.enable_bloom_filters)
++ if (opts.enable_changed_paths)
+ flags |= COMMIT_GRAPH_WRITE_BLOOM_FILTERS;
read_replace_refs = 0;
-
- diff --git a/commit-graph.h b/commit-graph.h
- --- a/commit-graph.h
- +++ b/commit-graph.h
-@@
- COMMIT_GRAPH_WRITE_PROGRESS = (1 << 1),
- COMMIT_GRAPH_WRITE_SPLIT = (1 << 2),
- /* Make sure that each OID in the input is a valid commit OID. */
-- COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 << 3)
-+ COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 << 3),
-+ COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4)
- };
-
- struct split_commit_graph_opts {
4: 3182a11f7c < -: ---------- commit-graph: document bloom filter format
6: 85bfdfa59c < -: ---------- commit-graph: test commit-graph write --changed-paths
8: 72a2bbf676 ! 10: 77f1c561e8 revision.c: use bloom filters to speed up path based revision walks
@@ -1,83 +1,35 @@
Author: Garima Singh <[email protected]>
- revision.c: use bloom filters to speed up path based revision walks
+ revision.c: use Bloom filters to speed up path based revision walks
- If bloom filters have been written to the commit-graph file, revision walk will
- use them to speed up revision walks for a particular path.
- Note: The current implementation does this in the case of single pathspec
- case only.
+ Revision walk will now use Bloom filters for commits to speed up revision
+ walks for a particular path (for computing history for that path), if they
+ are present in the commit-graph file.
- We load the bloom filters during the prepare_revision_walk step when dealing
- with a single pathspec. While comparing trees in rev_compare_trees(), if the
- bloom filter says that the file is not different between the two trees, we
- don't need to compute the expensive diff. This is where we get our performance
- gains.
+ We load the Bloom filters during the prepare_revision_walk step, but only
+ when dealing with a single pathspec. While comparing trees in
+ rev_compare_trees(), if the Bloom filter says that the file is not different
+ between the two trees, we don't need to compute the expensive diff. This is
+ where we get our performance gains. The other response of the Bloom filter
+ is `maybe`, in which case we fall back to the full diff calculation to
+ determine if the path was changed in the commit.
Performance Gains:
- We tested the performance of `git log --path` on the git repo, the linux and
- some internal large repos, with a variety of paths of varying depths.
+ We tested the performance of `git log -- <path>` on the git repo, the linux
+ and some internal large repos, with a variety of paths of varying depths.
On the git and linux repos:
- we observed a 2x to 5x speed up.
+ - we observed a 2x to 5x speed up.
On a large internal repo with files seated 6-10 levels deep in the tree:
- we observed 10x to 20x speed ups, with some paths going up to 28 times faster.
-
- RFC Notes:
- I plan to collect the folloowing statistics around this usage of bloom filters
- and trace them out using trace2.
- - number of bloom filter queries,
- - number of "No" responses (file hasn't changed)
- - number of "Maybe" responses (file may have changed)
- - number of "Commit not parsed" cases (commit had too many changes to have a
- bloom filter written out, currently our limit is 512 diffs)
+ - we observed 10x to 20x speed ups, with some paths going up to 28 times
+ faster.
Helped-by: Derrick Stolee <[email protected]
Helped-by: SZEDER Gábor <[email protected]>
Helped-by: Jonathan Tan <[email protected]>
Signed-off-by: Garima Singh <[email protected]>
- diff --git a/bloom.c b/bloom.c
- --- a/bloom.c
- +++ b/bloom.c
-@@
-
- return filter;
- }
-+
-+int bloom_filter_contains(struct bloom_filter *filter,
-+ struct bloom_key *key,
-+ struct bloom_filter_settings *settings)
-+{
-+ int i;
-+ uint64_t mod = filter->len * BITS_PER_BLOCK;
-+
-+ if (!mod)
-+ return 1;
-+
-+ for (i = 0; i < settings->num_hashes; i++) {
-+ uint64_t hash_mod = key->hashes[i] % mod;
-+ uint64_t block_pos = hash_mod / BITS_PER_BLOCK;
-+ if (!(filter->data[block_pos] & get_bitmask(hash_mod)))
-+ return 0;
-+ }
-+
-+ return 1;
-+}
-
- diff --git a/bloom.h b/bloom.h
- --- a/bloom.h
- +++ b/bloom.h
-@@
- struct bloom_key *key,
- struct bloom_filter_settings *settings);
-
-+int bloom_filter_contains(struct bloom_filter *filter,
-+ struct bloom_key *key,
-+ struct bloom_filter_settings *settings);
-+
- #endif
-
diff --git a/revision.c b/revision.c
--- a/revision.c
+++ b/revision.c
@@ -86,6 +38,7 @@
#include "hashmap.h"
#include "utf8.h"
+#include "bloom.h"
++#include "json-writer.h"
volatile show_early_output_fn_t show_early_output;
@@ -93,26 +46,106 @@
options->flags.has_changes = 1;
}
++static int bloom_filter_atexit_registered;
++static unsigned int count_bloom_filter_maybe;
++static unsigned int count_bloom_filter_definitely_not;
++static unsigned int count_bloom_filter_false_positive;
++static unsigned int count_bloom_filter_not_present;
++static unsigned int count_bloom_filter_length_zero;
++
++static void trace2_bloom_filter_statistics_atexit(void)
++{
++ struct json_writer jw = JSON_WRITER_INIT;
++
++ jw_object_begin(&jw, 0);
++ jw_object_intmax(&jw, "filter_not_present", count_bloom_filter_not_present);
++ jw_object_intmax(&jw, "zero_length_filter", count_bloom_filter_length_zero);
++ jw_object_intmax(&jw, "maybe", count_bloom_filter_maybe);
++ jw_object_intmax(&jw, "definitely_not", count_bloom_filter_definitely_not);
++ jw_end(&jw);
++
++ trace2_data_json("bloom", the_repository, "statistics", &jw);
++
++ jw_release(&jw);
++}
++
++static void prepare_to_use_bloom_filter(struct rev_info *revs)
++{
++ struct pathspec_item *pi;
++ char *path_alloc = NULL;
++ const char *path;
++ int last_index;
++ int len;
++
++ if (!revs->commits)
++ return;
++
++ repo_parse_commit(revs->repo, revs->commits->item);
++
++ if (!revs->repo->objects->commit_graph)
++ return;
++
++ revs->bloom_filter_settings = revs->repo->objects->commit_graph->bloom_filter_settings;
++ if (!revs->bloom_filter_settings)
++ return;
++
++ pi = &revs->pruning.pathspec.items[0];
++ last_index = pi->len - 1;
++
++ if (pi->match[last_index] == '/') {
++ path_alloc = xstrdup(pi->match);
++ path_alloc[last_index] = '\0';
++ path = path_alloc;
++ } else
++ path = pi->match;
++
++ len = strlen(path);
++
++ revs->bloom_key = xmalloc(sizeof(struct bloom_key));
++ fill_bloom_key(path, len, revs->bloom_key, revs->bloom_filter_settings);
++
++ if (trace2_is_enabled() && !bloom_filter_atexit_registered) {
++ atexit(trace2_bloom_filter_statistics_atexit);
++ bloom_filter_atexit_registered = 1;
++ }
++
++ free(path_alloc);
++}
++
+static int check_maybe_different_in_bloom_filter(struct rev_info *revs,
-+ struct commit *commit,
-+ struct bloom_key *key,
-+ struct bloom_filter_settings *settings)
++ struct commit *commit)
+{
+ struct bloom_filter *filter;
++ int result;
+
+ if (!revs->repo->objects->commit_graph)
+ return -1;
++
+ if (commit->generation == GENERATION_NUMBER_INFINITY)
+ return -1;
-+ if (!key || !settings)
-+ return -1;
+
+ filter = get_bloom_filter(revs->repo, commit, 0);
+
-+ if (!filter || !filter->len)
-+ return 1;
++ if (!filter) {
++ count_bloom_filter_not_present++;
++ return -1;
++ }
+
-+ return bloom_filter_contains(filter, key, settings);
++ if (!filter->len) {
++ count_bloom_filter_length_zero++;
++ return -1;
++ }
++
++ result = bloom_filter_contains(filter,
++ revs->bloom_key,
++ revs->bloom_filter_settings);
++
++ if (result)
++ count_bloom_filter_maybe++;
++ else
++ count_bloom_filter_definitely_not++;
++
++ return result;
+}
+
static int rev_compare_tree(struct rev_info *revs,
@@ -129,11 +162,8 @@
return REV_TREE_SAME;
}
-+ if (revs->pruning.pathspec.nr == 1 && !nth_parent) {
-+ bloom_ret = check_maybe_different_in_bloom_filter(revs,
-+ commit,
-+ revs->bloom_key,
-+ revs->bloom_filter_settings);
++ if (revs->pruning.pathspec.nr == 1 && !revs->reflog_info && !nth_parent) {
++ bloom_ret = check_maybe_different_in_bloom_filter(revs, commit);
+
+ if (bloom_ret == 0)
+ return REV_TREE_SAME;
@@ -142,6 +172,16 @@
tree_difference = REV_TREE_SAME;
revs->pruning.flags.has_changes = 0;
if (diff_tree_oid(&t1->object.oid, &t2->object.oid, "",
+ &revs->pruning) < 0)
+ return REV_TREE_DIFFERENT;
++
++ if (!nth_parent)
++ if (bloom_ret == 1 && tree_difference == REV_TREE_SAME)
++ count_bloom_filter_false_positive++;
++
+ return tree_difference;
+ }
+
@@
die("cannot simplify commit %s (because of %s)",
oid_to_hex(&commit->object.oid),
@@ -152,45 +192,19 @@
if (!revs->simplify_history || !relevant_commit(p)) {
/* Even if a merge with an uninteresting
@@
+ FOR_EACH_OBJECT_PROMISOR_ONLY);
}
- }
-+static void prepare_to_use_bloom_filter(struct rev_info *revs)
-+{
-+ struct pathspec_item *pi;
-+ const char *path;
-+ size_t len;
-+
-+ if (!revs->commits)
-+ return;
-+
-+ parse_commit(revs->commits->item);
-+
-+ if (!revs->repo->objects->commit_graph)
-+ return;
-+
-+ revs->bloom_filter_settings = revs->repo->objects->commit_graph->settings;
-+ if (!revs->bloom_filter_settings)
-+ return;
-+
-+ pi = &revs->pruning.pathspec.items[0];
-+ path = pi->match;
-+ len = strlen(path);
-+
-+ load_bloom_filters();
-+ revs->bloom_key = xmalloc(sizeof(struct bloom_key));
-+ fill_bloom_key(path, len, revs->bloom_key, revs->bloom_filter_settings);
-+}
-+
- int prepare_revision_walk(struct rev_info *revs)
- {
- int i;
++ if (revs->pruning.pathspec.nr == 1 && !revs->reflog_info)
++ prepare_to_use_bloom_filter(revs);
+ if (revs->no_walk != REVISION_WALK_NO_WALK_UNSORTED)
+ commit_list_sort_by_date(&revs->commits);
+ if (revs->no_walk)
@@
simplify_merges(revs);
if (revs->children.name)
set_children(revs);
-+ if (revs->pruning.pathspec.nr == 1)
-+ prepare_to_use_bloom_filter(revs);
++
return 0;
}
@@ -212,12 +226,33 @@
struct topo_walk_info *topo_walk_info;
+
++ /* Commit graph bloom filter fields */
++ /* The bloom filter key for the pathspec */
+ struct bloom_key *bloom_key;
++ /*
++ * The bloom filter settings used to generate the key.
++ * This is loaded from the commit-graph being used.
++ */
+ struct bloom_filter_settings *bloom_filter_settings;
};
int ref_excluded(struct string_list *, const char *path);
+ diff --git a/t/helper/test-read-graph.c b/t/helper/test-read-graph.c
+ --- a/t/helper/test-read-graph.c
+ +++ b/t/helper/test-read-graph.c
+@@
+ printf(" commit_metadata");
+ if (graph->chunk_extra_edges)
+ printf(" extra_edges");
++ if (graph->chunk_bloom_indexes)
++ printf(" bloom_indexes");
++ if (graph->chunk_bloom_data)
++ printf(" bloom_data");
+ printf("\n");
+
+ UNLEAK(graph);
+
diff --git a/t/t4216-log-bloom.sh b/t/t4216-log-bloom.sh
new file mode 100755
--- /dev/null
@@ -228,72 +263,138 @@
+test_description='git log for a path with bloom filters'
+. ./test-lib.sh
+
-+test_expect_success 'setup repo' '
++test_expect_success 'setup test - repo, commits, commit graph, log outputs' '
+ git init &&
-+ git config core.commitGraph true &&
-+ git config gc.writeCommitGraph false &&
-+ infodir=".git/objects/info" &&
-+ graphdir="$infodir/commit-graphs" &&
-+ test_oid_init
++ mkdir A A/B A/B/C &&
++ test_commit c1 A/file1 &&
++ test_commit c2 A/B/file2 &&
++ test_commit c3 A/B/C/file3 &&
++ test_commit c4 A/file1 &&
++ test_commit c5 A/B/file2 &&
++ test_commit c6 A/B/C/file3 &&
++ test_commit c7 A/file1 &&
++ test_commit c8 A/B/file2 &&
++ test_commit c9 A/B/C/file3 &&
++ git checkout -b side HEAD~4 &&
++ test_commit side-1 file4 &&
++ git checkout master &&
++ git merge side &&
++ test_commit c10 file5 &&
++ mv file5 file5_renamed &&
++ git add file5_renamed &&
++ git commit -m "rename" &&
++ git commit-graph write --reachable --changed-paths
+'
-+
-+test_expect_success 'create 9 commits and repack' '
-+ test_commit c1 file1 &&
-+ test_commit c2 file2 &&
-+ test_commit c3 file3 &&
-+ test_commit c4 file1 &&
-+ test_commit c5 file2 &&
-+ test_commit c6 file3 &&
-+ test_commit c7 file1 &&
-+ test_commit c8 file2 &&
-+ test_commit c9 file3
-+'
-+
-+printf "c7\nc4\nc1" > expect_file1
-+
-+test_expect_success 'log without bloom filters' '
-+ git log --pretty="format:%s" -- file1 > actual &&
-+ test_cmp expect_file1 actual
-+'
-+
-+printf "c8\nc7\nc5\nc4\nc2\nc1" > expect_file1_file2
-+
-+test_expect_success 'multi-path log without bloom filters' '
-+ git log --pretty="format:%s" -- file1 file2 > actual &&
-+ test_cmp expect_file1_file2 actual
-+'
-+
+graph_read_expect() {
+ OPTIONAL=""
+ NUM_CHUNKS=5
-+ if test ! -z $2
-+ then
-+ OPTIONAL=" $2"
-+ NUM_CHUNKS=$((3 + $(echo "$2" | wc -w)))
-+ fi
+ cat >expect <<- EOF
+ header: 43475048 1 1 $NUM_CHUNKS 0
+ num_commits: $1
-+ chunks: oid_fanout oid_lookup commit_metadata bloom_indexes bloom_data$OPTIONAL
++ chunks: oid_fanout oid_lookup commit_metadata bloom_indexes bloom_data
+ EOF
+ test-tool read-graph >output &&
+ test_cmp expect output
+}
+
-+test_expect_success 'write commit graph with bloom filters' '
-+ git commit-graph write --reachable --changed-paths &&
-+ test_path_is_file $infodir/commit-graph &&
-+ graph_read_expect "9"
++test_expect_success 'commit-graph write wrote out the bloom chunks' '
++ graph_read_expect 13
++'
++
++setup() {
++ rm output
++ rm "$TRASH_DIRECTORY/trace.perf"
++ git -c core.commitGraph=false log --pretty="format:%s" $1 >log_wo_bloom
++ GIT_TRACE2_PERF="$TRASH_DIRECTORY/trace.perf" git -c core.commitGraph=true log --pretty="format:%s" $1 >log_w_bloom
++}
++
++test_bloom_filters_used() {
++ log_args=$1
++ bloom_trace_prefix="statistics:{\"filter_not_present\":0,\"zero_length_filter\":0,\"maybe\""
++ setup "$log_args"
++ grep -q "$bloom_trace_prefix" "$TRASH_DIRECTORY/trace.perf" && test_cmp log_wo_bloom log_w_bloom
++}
++
++test_bloom_filters_not_used() {
++ log_args=$1
++ setup "$log_args"
++ !(grep -q "statistics:{\"filter_not_present\":" "$TRASH_DIRECTORY/trace.perf") && test_cmp log_wo_bloom log_w_bloom
++}
++
++for path in A A/B A/B/C A/file1 A/B/file2 A/B/C/file3 file4 file5_renamed
++do
++ for option in "" \
++ "--full-history" \
++ "--full-history --simplify-merges" \
++ "--simplify-merges" \
++ "--simplify-by-decoration" \
++ "--follow" \
++ "--first-parent" \
++ "--topo-order" \
++ "--date-order" \
++ "--author-date-order" \
++ "--ancestry-path side..master"
++ do
++ test_expect_success "git log option: $option for path: $path" '
++ test_bloom_filters_used "$option -- $path"
++ '
++ done
++done
++
++test_expect_success 'git log -- folder works with and without the trailing slash' '
++ test_bloom_filters_used "-- A" &&
++ test_bloom_filters_used "-- A/"
++'
++
++test_expect_success 'git log for path that does not exist. ' '
++ test_bloom_filters_used "-- path_does_not_exist"
++'
++
++test_expect_success 'git log with --walk-reflogs does not use bloom filters' '
++ test_bloom_filters_not_used "--walk-reflogs -- A"
++'
++
++test_expect_success 'git log -- multiple path specs does not use bloom filters' '
++ test_bloom_filters_not_used "-- file4 A/file1"
++'
++
++test_expect_success 'git log with wildcard that resolves to a single path uses bloom filters' '
++ test_bloom_filters_used "-- *4" &&
++ test_bloom_filters_used "-- *renamed"
+'
+
-+test_expect_success 'log using bloom filters' '
-+ git log --pretty="format:%s" -- file1 > actual &&
-+ test_cmp expect_file1 actual
++test_expect_success 'git log with wildcard that resolves to a multiple paths does not uses bloom filters' '
++ test_bloom_filters_not_used "-- *" &&
++ test_bloom_filters_not_used "-- file*"
+'
+
-+test_expect_success 'multi-path log using bloom filters' '
-+ git log --pretty="format:%s" -- file1 file2 > actual &&
-+ test_cmp expect_file1_file2 actual
++test_expect_success 'setup - add commit-graph to the chain without bloom filters' '
++ test_commit c14 A/anotherFile2 &&
++ test_commit c15 A/B/anotherFile2 &&
++ test_commit c16 A/B/C/anotherFile2 &&
++ GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=0 git commit-graph write --reachable --split &&
++ test_line_count = 2 .git/objects/info/commit-graphs/commit-graph-chain
++'
++
++test_expect_success 'git log does not use bloom filters if the latest graph does not have bloom filters.' '
++ test_bloom_filters_not_used "-- A/B"
++'
++
++test_expect_success 'setup - add commit-graph to the chain with bloom filters' '
++ test_commit c17 A/anotherFile3 &&
++ git commit-graph write --reachable --changed-paths --split &&
++ test_line_count = 3 .git/objects/info/commit-graphs/commit-graph-chain
++'
++
++test_bloom_filters_used_when_some_filters_are_missing() {
++ log_args=$1
++ bloom_trace_prefix="statistics:{\"filter_not_present\":3,\"zero_length_filter\":0,\"maybe\":6,\"definitely_not\":6"
++ setup "$log_args"
++ grep -q "$bloom_trace_prefix" "$TRASH_DIRECTORY/trace.perf" && test_cmp log_wo_bloom log_w_bloom
++}
++
++test_expect_success 'git log uses bloom filters if they exist in the latest but not all commit graphs in the chain.' '
++ test_bloom_filters_used_when_some_filters_are_missing "-- A/B"
+'
+
+test_done 9: e1c315d0a7 ! 11: e1b076a714 commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
@@ -1,14 +1,15 @@
Author: Garima Singh <[email protected]>
- commit-graph: add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag
+ commit-graph: add GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS test flag
- Add GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS test flag to the test setup suite in
- order to toggle writing bloom filters when running any of the git tests. If set
- to true, we will compute and write bloom filters every time a test calls
- git commit-graph write.
+ Add GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS test flag to the test setup suite
+ in order to toggle writing Bloom filters when running any of the git tests.
+ If set to true, we will compute and write Bloom filters every time a test
+ calls git commit-graph write, as if the --changed-paths option was
+ passed in.
The test suite passes when GIT_TEST_COMMIT_GRAPH and
- GIT_COMMIT_GRAPH_BLOOM_FILTERS are enabled.
+ GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS are enabled.
@@ -20,8 +21,9 @@
flags |= COMMIT_GRAPH_WRITE_SPLIT;
if (opts.progress)
flags |= COMMIT_GRAPH_WRITE_PROGRESS;
-- if (opts.enable_bloom_filters)
-+ if (opts.enable_bloom_filters || git_env_bool(GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS, 0))
+- if (opts.enable_changed_paths)
++ if (opts.enable_changed_paths ||
++ git_env_bool(GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS, 0))
flags |= COMMIT_GRAPH_WRITE_BLOOM_FILTERS;
read_replace_refs = 0;
@@ -33,7 +35,7 @@
export GIT_TEST_OE_SIZE=10
export GIT_TEST_OE_DELTA_SIZE=5
export GIT_TEST_COMMIT_GRAPH=1
-+ export GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=1
++ export GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=1
export GIT_TEST_MULTI_PACK_INDEX=1
make test
;;
@@ -45,7 +47,7 @@
#define GIT_TEST_COMMIT_GRAPH "GIT_TEST_COMMIT_GRAPH"
#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"
-+#define GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS "GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS" ++#define GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS "GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS"
struct commit;
struct bloom_filter_settings;
@@ -57,8 +59,10 @@
be written after every 'git commit' command, and overrides the 'core.commitGraph' setting to true.
-+GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=<boolean>, when true, forces commit-graph -+write to compute and write bloom filters for every 'git commit-graph write' ++GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=<boolean>, when true, forces ++commit-graph write to compute and write changed path Bloom filters for ++every 'git commit-graph write', as if the --changed-paths option was ++passed in.
+
GIT_TEST_FSMONITOR=$PWD/t7519/fsmonitor-all exercises the fsmonitor code path for utilizing a file system monitor to speed up detecting
@@ -72,11 +76,11 @@
. ./test-lib.sh
+GIT_TEST_COMMIT_GRAPH=0
-+GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0 ++GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=0
+
- test_expect_success 'setup repo' '
+ test_expect_success 'setup test - repo, commits, commit graph, log outputs' ' git init &&
- git config core.commitGraph true &&
+ mkdir A A/B A/B/C &&
diff --git a/t/t5318-commit-graph.sh b/t/t5318-commit-graph.sh --- a/t/t5318-commit-graph.sh
@@ -85,7 +89,7 @@
test_description='commit graph'
. ./test-lib.sh
-+GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0
++GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=0
+
test_expect_success 'setup full repo' '
mkdir full &&
@@ -98,21 +102,7 @@
. ./test-lib.sh
GIT_TEST_COMMIT_GRAPH=0
-+GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0
++GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS=0
test_expect_success 'setup repo' '
git init &&
-
- diff --git a/t/t5325-commit-graph-bloom.sh b/t/t5325-commit-graph-bloom.sh
- --- a/t/t5325-commit-graph-bloom.sh
- +++ b/t/t5325-commit-graph-bloom.sh
-@@
- test_description='commit graph with bloom filters'
- . ./test-lib.sh
-
-+GIT_TEST_COMMIT_GRAPH=0 -+GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS=0
-+
- test_expect_success 'setup repo' '
- git init &&
- git config core.commitGraph true &&
Signature · 1 line
gitgitgadget
PATCH v2 1/11 commit-graph: use MAX_NUM_CHUNKS
From: Garima Singh <[email protected]>
This is a minor cleanup to make it easier to change the number of chunks being written to the commit-graph in the future.
--- commit-graph.c | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-)
commit-graph.c +3 -2
@@ -23,6 +23,7 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ +#define MAX_NUM_CHUNKS 5#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)
@@ -1356,8 +1357,8 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)int fd;struct hashfile *f;struct lock_file lk =LOCK_INIT ; -uint32_t chunk_ids[6 ]; -uint64_t chunk_offsets[6 ]; +uint32_t chunk_ids[MAX_NUM_CHUNKS +1 ]; +uint64_t chunk_offsets[MAX_NUM_CHUNKS +1 ];const unsigned hashsz = the_hash_algo->rawsz;struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;
Signature · 1 line
gitgitgadget
Re: [PATCH v2 01/11] commit-graph: use MAX_NUM_CHUNKS
Quoted 5 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Subject: Re: [PATCH v2 01/11] commit-graph: useMAX_NUM_CHUNKSThis is a minor cleanup to make it easier to change the number of chunks being written to the commit-graph in the future.
Looks good to me...
...with the very minor possible nitpick that the subject probably should be
[PATCH v2 01/11] commit-graph: define and use MAX_NUM_CHUNKS
But this is just a bikeshedding. Feel free to disregard this.
Best,
Signature · 1 line
Jakub Narębski
Quoted 28 lines
Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-)commit-graph.c +3
-2@@ -23,6 +23,7 @@#define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ +#define MAX_NUM_CHUNKS 5#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)@@ -1356,8 +1357,8 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)int fd;struct hashfile *f;struct lock_file lk =LOCK_INIT ; -uint32_t chunk_ids[6 ]; -uint64_t chunk_offsets[6 ]; +uint32_t chunk_ids[MAX_NUM_CHUNKS +1 ]; +uint64_t chunk_offsets[MAX_NUM_CHUNKS +1 ];const unsigned hashsz = the_hash_algo->rawsz;struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;
PATCH v2 2/11 bloom: core Bloom filter implementation for changed paths
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3]
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
Note: The performance gains we have observed with these values are significant enough that we did not need to tweak these settings. The performance numbers are included in the cover letter of this series and in the message of a subsequent commit where we use Bloom filters in to speed up git log -- <path>.
2. As described in the blog and in [3], we do not need 7 independent hashing functions. We use the Murmur3 hashing scheme. Seed it twice and then combine those to procure an arbitrary number of hash values.
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
4. We fill the Bloom filters as (const char *data, int len) pairs as "struct bloom_filter"s in a commit slab.
5. The seed_murmur3 method is implemented as described in [5]. It hashes the given data using a given seed and produces a uniformly distributed hash value.
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
[2] Flavio Bonomi, Michael Mitzenmacher, Rina Panigrahy, Sushil Singh, George Varghese
"An Improved Construction for Counting Bloom Filters"
http://theory.stanford.edu/~rinap/papers/esa2006b.pdf
https://doi.org/10.1007/11841036_61[3] Peter C. Dillinger and Panagiotis Manolios
"Bloom Filters in Probabilistic Verification"
http://www.ccs.neu.edu/home/pete/pub/Bloom-filters-verification.pdf
https://doi.org/10.1007/978-3-540-30494-4_26
[4] Thomas Mueller Graf, Daniel Lemire
"Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters"
https://arxiv.org/abs/1912.08258
[5] https://en.wikipedia.org/wiki/MurmurHash#Algorithm
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
Makefile +2 -0
@@ -695,6 +695,7 @@ X = PROGRAMS += $(patsubst %.o,git-%$X,$(PROGRAM_OBJS)) +TEST_BUILTINS_OBJS += test-bloom.o TEST_BUILTINS_OBJS += test-chmtime.o TEST_BUILTINS_OBJS += test-config.o TEST_BUILTINS_OBJS += test-ctype.o
@@ -840,6 +841,7 @@ LIB_OBJS += base85.o LIB_OBJS += bisect.o LIB_OBJS += blame.o LIB_OBJS += blob.o +LIB_OBJS += bloom.o LIB_OBJS += branch.o LIB_OBJS += bulk-checkin.o LIB_OBJS += bundle.o
bloom.c new file +228 -0
228 lines not on this page · raw message
bloom.h new file +56 -0
56 lines not on this page · raw message
t/helper/test-bloom.c new file +84 -0
84 lines not on this page · raw message
t/helper/test-tool.c +1 -0
@@ -14,6 +14,7 @@ struct test_cmd { };static struct test_cmd cmds[] = { + {"bloom" , cmd__bloom }, {"chmtime" , cmd__chmtime }, {"config" , cmd__config }, {"ctype" , cmd__ctype },
t/helper/test-tool.h +1 -0
@@ -4,6 +4,7 @@#define USE_THE_INDEX_COMPATIBILITY_MACROS #include "git-compat-util.h" +int cmd__bloom (int argc,const char **argv);int cmd__chmtime (int argc,const char **argv);int cmd__config (int argc,const char **argv);int cmd__ctype (int argc,const char **argv);
t/t0095-bloom.sh new file +113 -0
113 lines not on this page · raw message
Signature · 1 line
gitgitgadget
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
Quoted 6 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3].
^^- to add
Quoted 4 lines
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation,
^^- to add
Quoted 2 lines
while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
I don't know if it is worth it, but I think it should be size of each entry, or in other words number of bits per element in the set, as first value, and number of hashes as second.
About where those values come from. The idea is that you decide on the acceptable number of false positives, for example 1% (or 0.8% given that the values must be integers); that gives you number of bits per element i.e. 10, and from there you can find optimal number of hashes i.e. 7. The references mentioned (and Wikipedia article) have those equations.
Quoted 6 lines
Note: The performance gains we have observed with these values are significant enough that we did not need to tweak these settings. The performance numbers are included in the cover letter of this series and in the message of a subsequent commit where we use Bloom filters in to speed up
git log -- <path>.
All right.
Quoted 4 lines
2. As described in the blog and in [3], we do not need 7 independent hashing functions. We use the Murmur3 hashing scheme. Seed it twice and then combine those to procure an arbitrary number of hash values.
The technique from [3] is called "double hashing" (Algorithm 1 and equation (4) on page 10). Note that in this paper there is also presented "enhanced double hashing" scheme (Algorithm 2 and equation (6)) -- more about it later.
This is a standard technique from the hashing literature, called open addressing with double hashing in hash tables.
This "enhanced double hashing" technique is further analyzed in [6].
[6] Adam Kirsch, Michael Mitzenmacher
"Less Hashing, Same Performance: Building a Better Bloom Filter"
https://www.eecs.harvard.edu/~michaelm/postscripts/esa2006a.pdf
https://doi.org/10.5555/1400123.1400125
Quoted 3 lines
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
If I understand it correctly (but which might not be entirely clear), the filter size in bits is the number of changes^* times 10, rounded up to the nearest multiple of 64.
[*] where the number of changes is the number of changed files (new blob objects) _and_ the number of changed directories (new tree objects, excluding root tree object change).
The interesting corner case, which might be worth specifying explicitly, is what happens in the case there are _no changes_ with respect to first parent (which can happen with either commit created with git commit --allow-empty, or merge created e.g. with git merge --strategy=ours). Is this case represented as Bloom filter of length 0, or as a Bloom filter of length of one 64-bit word which is minimal length composed of all 0's (0x0000000000000000)?
Quoted 3 lines
4. We fill the Bloom filters as (const char *data, int len) pairs as "struct bloom_filter"s in a commit slab.
All right.
Quoted 4 lines
5. The
seed_murmur3method is implemented as described in [5]. It hashes the given data using a given seed and produces a uniformly distributed hash value.
Actually there are two variants of Murmur3 hash, and we should specify which one we are using. There is Murmur3_32 which returns 32-bit value, and Murmur3_128 which returns 128-bit value (which is different for x86 and x64 versions). We use Murmur3_32.
Also, seed_murmur3 is the name given the function, not the name of the method i.e. of a non-cryptographic hash function.
One question that one might as is why use Murmur3 hash instead for example already implemented FNV hash from hashmap implementation (FNV hash i.e. Fowler–Noll–Vo hash function is another non-cryptographic hash function). The answer is of course performance while maintaining good enough quality (and for Bloom filter there is no problem of "hash flooding" denial-of-service like for there is for a hash table -- no need for SipHash or similar).
Quoted 2 lines
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
I would write it in full, similar to subsequent bibliographical entries, that is:
[1] Derrick Stolee
"Supercharging the Git Commit Graph IV: Bloom Filters"
https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
But that is just a matter of style.
Quoted 10 lines
[2] Flavio Bonomi, Michael Mitzenmacher, Rina Panigrahy, Sushil Singh, George Varghese
"An Improved Construction for Counting Bloom Filters" http://theory.stanford.edu/~rinap/papers/esa2006b.pdf https://doi.org/10.1007/11841036_61[3] Peter C. Dillinger and Panagiotis Manolios
"Bloom Filters in Probabilistic Verification"
http://www.ccs.neu.edu/home/pete/pub/Bloom-filters-verification.pdf
https://doi.org/10.1007/978-3-540-30494-4_26
Good, we should be able to find them even if the URL with PDF stops working for some reason.
Quoted 10 lines
[4] Thomas Mueller Graf, Daniel Lemire
"Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters"
https://arxiv.org/abs/1912.08258[5] https://en.wikipedia.org/wiki/MurmurHash#Algorithm
Helped-by Jeff King <[email protected]>Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>
Quoted 13 lines
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
As I wrote earlier, In my opinion this patch could be split into three individual single-functionality pieces, to make it easier to review and aid in bisectability if needed.
1. Add implementation of MurmurHash v3 (32-bit result)
Include tests based on test-tool (creating file similar to the t/helper/test-hash.c, or enhancing to that file) that the implementation is correct, for example that 'The quick brown fox jumps over the lazy dog' or 'Hello world!' with a given seed (for example the default seed of 0) hashes to the same value as other implementations, including the reference implementation in https://github.com/aappleby/smhasher
2. Add implementation of [variant of] Bloom filter
Include generic Bloom filter tests i.e. that it correctly answers "yes" and "maybe" (create filter, save it or print it, then use stored filter), and tests specific to our implementation, namely that the size of the filter behaves as it should.
3. Bloom filter implementation for changed paths
Here include tests that use 'test-tool bloom get_filter_for_commit', that filter for commit with no changes and for commit with more than 512 changes works correctly, that directories are added along the files, etc.
This split would make it easier to distinguish if the problems with tests failing on big-endian architectures is caused by different output from our implementation of Murmur3 hash, different bit sequence in the Bloom filter, or just different printed output of Bloom filter data.
Quoted 14 lines
Makefile +1
-0@@ -695,6 +695,7 @@ X = PROGRAMS += $(patsubst %.o,git-%$X,$(PROGRAM_OBJS)) +TEST_BUILTINS_OBJS += test-bloom.o TEST_BUILTINS_OBJS += test-chmtime.o TEST_BUILTINS_OBJS += test-config.o TEST_BUILTINS_OBJS += test-ctype.o
Makefile LIB_OBJS += base85.o · line 847
Quoted 7 lines
Makefile +1
-0@@ -840,6 +841,7 @@ LIB_OBJS += base85.o LIB_OBJS += bisect.o LIB_OBJS += blame.o LIB_OBJS += blob.o +LIB_OBJS += bloom.o LIB_OBJS += branch.o LIB_OBJS += bulk-checkin.o LIB_OBJS += bundle.o
All right.
Quoted 8 lines
bloom.c new file +2
-0@@ -0,0 +1,228 @@ +#include "git-compat-util.h" +#include "bloom.h"
bloom.c line 12
Quoted 10 lines
bloom.c new file +10
-0+#include "commit-graph.h" +#include "object-store.h" +#include "diff.h" +#include "diffcore.h" +#include "revision.h" +#include "hashmap.h" + +define_commit_slab(bloom_filter_slab, struct bloom_filter); + +struct bloom_filter_slab bloom_filters;
All right, this is needed to store per-commit Bloom filter data (inside-out object style, or in other jargon stored on slab).
bloom.c line 17
Quoted 5 lines
bloom.c new file +5
-0+ +struct pathmap_hash_entry { +struct hashmap_entry entry; +const char path[FLEX_ARRAY ]; +};
O.K. this is used to add gather paths to add them all as elements to the Bloom filter.
bloom.c line 24
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}
Hmmm... both the algoritm on Wikipedia, and reference implementation use rotate *left*, not rotate *right* in the implementation of Murmur3 hash, see
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L23
inline uint32_t rotl32 ( uint32_t x, int8_t r )
{
return (x << r) | (x >> (32 - r));
}
bloom.c line 31
Quoted 7 lines
bloom.c new file +7
-0+ +/* +* Calculate a hash value for the given data using the given seed. +* Produces a uniformly distributed hash value. +* Not considered to be cryptographically secure. +* Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm +**/
^^-- why two _trailing_ asterisks?
Perhaps it would be worth it to add that this hash function is intended to be fast while being reasonably good (it is distributed randomly enough, and it doesn't have too many hash collisions on typical inputs). But this might be too much for a comment.
bloom.c line 32
Quoted 1 line
bloom.c new file +1
-0+static uint32_t seed_murmur3 (uint32_t seed,const char *data,int len)
A few things: name of the function, type of parameters and ordering of parameters.
About the name: when I first saw seed_murmur3() used, I thought it was _setting_ the seed, not that it was returning the 32-bit hash value. Other implementations use either murmur3_32, MurmurHash3_x86_32, or something similar like hashmurmur3_32. If we were to specify that 'seed' is one of parameters, then using this word as part of suffix would be better than using seed_ prefix; if we need it at all.
Because there is 32-bit and 128-bit variants of Murmur3, I think the _32 suffix should be a part of function name.
In short, I think that the name of the function should be murmur3_32, or murmurhash3_32, or possibly murmur3_32_seed, or something like that.
About types of parameters and the return type of function: I understand that 'data' parameter is of type 'const char *', instead of more generic 'const uint8_t*' or 'const void *' because of what we will be using the hash function for. On the other hand taking a look at implementation of FNV hash function in hashmap.{c,h} we see that the 'str*' variants take 'const char *' parameter _without_ length, and 'mem*' variants take 'const void *' parmeter with length of data.
Shouldn't 'len' parameter be of 'size_t' type, rather than 'int'? Both the example implementation in C on Wikipedia page, and implementation in C in qLibc use 'size_t'; the implementation of FNV hash in hashmap in Git also uses 'size_t' (while admittedly the reference implementation in C++ of Austin Appleby uses 'int' type for len parameter).
For 32-bit output variant of Murmur3 hash, using uint32_t as return type is just fine. The '*hash*' functions from hashmap.{c,h} use 'unsigned int' but I think 'uint32_t' is better.
About names and ordering of parameters: the 'seed' or 'hash_seed' parameter should be either first or last; it is a matter of preference. While example implementation on Wikipedia page, Appleby's reference implementation in C++ have 'seed' as last parameter, memihash_cont() from hashmap.c in Git has it as first parameter.
In short: I'm fine with either order (seed parameter first or last), and either name (be it 'seed' or 'hash_seed').
Quoted 9 lines
bloom.c new file +9
-0+{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const uint32_t r1 =15 ; +const uint32_t r2 =13 ; +const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ;
bloom.c line 51
Quoted 10 lines
bloom.c new file +10
-0+const char *tail; + +int len4 = len /sizeof (uint32_t ); + +const uint32_t *blocks = (const uint32_t *)data; + +uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i];
IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness. The pseudo-code description of the algorithm on Wikipedia (above of C code) says that endian swapping is only necessary on big-endian machines (and that it is needed to place the meaningful digits towards the low end of the value, to not be discarded by the modulo arithmetic under overflow).
The original / reference implementation by Austin Appleby in C++ uses getblock32() function for doing the block read... but it doesn't actually implement the endian-swapping on big-endian architecture:
//----------------------------------------------------------------------------- // Block read - if your platform needs to do endian-swapping or can only // handle aligned reads, do the conversion here
FORCE_INLINE uint32_t getblock32 ( const uint32_t * p, int i )
{
return p[i];
}References:
-----------
1. https://en.wikipedia.org/wiki/MurmurHash#Algorithm
2. https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp
bloom.c line 53
Quoted 2 lines
bloom.c new file +2
-0+ k *= c1; + k =rotate_right (k, r1);
It is k ROL r1 / ROTL32(k,15) / (k << 15) | (k >> (32 - 15)) (in other implementations), not rotate_right.
bloom.c line 57
Quoted 4 lines
bloom.c new file +4
-0+ k *= c2; + + seed ^= k; + seed =rotate_right (seed, r2) * m + n;
It is hash ROL r2 / ROTL32(h1,13) / (h << 13) | (h >> (32 - 13)) (in other implementations), not rotate_right.
References:
-----------
1. https://en.wikipedia.org/wiki/MurmurHash#Algorithm
2. https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L94
3. https://github.com/wolkykim/qlibc/blob/master/src/utilities/qhash.c#L258
bloom.c line 60
Quoted 3 lines
bloom.c new file +3
-0+ } + + tail = (data + len4 *sizeof (uint32_t ));
Hmmm... in the pseudocode implementation on Wikipedia this is the place where one needs to respect endianness:
with any remainingBytesInKey do
remainingBytes ← SwapToLittleEndian(remainingBytesInKey)
// Note: Endian swapping is only necessary on big-endian machines.
// The purpose is to place the meaningful digits towards the low end of the value,
// so that these digits have the greatest potential to affect the low range digits
// in the subsequent multiplication. Consider that locating the meaningful digits
// in the high range would produce a greater effect upon the high digits of the
// multiplication, and notably, that such high digits are likely to be discarded
// by the modulo arithmetic under overflow. We don't want that.On the other hand in the reference Appleby's C++ implementation the endian-swapping is [ssumed to be] done only in the loop over data. Either should be enough alone, but doing swapping for remaining bytes only would work, it would be a better solution -- you do swap only once, at the end.
It looks like the Crhomium implementation in C by Shane Day (public domain) uses the second solution; well almost, see:
https://chromium.googlesource.com/external/smhasher/+/5b8fd3c31a58b87b80605dca7a64fad6cb3f8a0f/PMurHash.c#189
Quoted 469 lines
bloom.c new file +168
-0+ +switch (len & (sizeof (uint32_t ) -1 )) + { +case 3 : + k1 ^= ((uint32_t )tail[2 ]) <<16 ; +/*-fallthrough*/ +case 2 : + k1 ^= ((uint32_t )tail[1 ]) <<8 ; +/*-fallthrough*/ +case 1 : + k1 ^= ((uint32_t )tail[0 ]) <<0 ; + k1 *= c1; + k1 =rotate_right (k1, r1); + k1 *= c2; + seed ^= k1; +break ; + } + + seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); + +return seed; +} + +static inline uint64_t get_bitmask (uint32_t pos) +{ +return ((uint64_t )1 ) << (pos & (BITS_PER_WORD -1 )); +} + +void load_bloom_filters (void ) +{ +init_bloom_filter_slab (&bloom_filters); +} + +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings) +{ +int i; +const uint32_t seed0 =0x293ae76f ; +const uint32_t seed1 =0x7e646e2c ; +const uint32_t hash0 =seed_murmur3 (seed0, data, len); +const uint32_t hash1 =seed_murmur3 (seed1, data, len); + + key->hashes = (uint32_t *)xcalloc (settings->num_hashes,sizeof (uint32_t )); +for (i =0 ; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1; +} + +void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings) +{ +int i; +uint64_t mod = filter->len *BITS_PER_WORD ; + +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_WORD ; + + filter->data[block_pos] |=get_bitmask (hash_mod); + } +} + +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c) +{ +struct bloom_filter *filter; +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; +int i; +struct diff_options diffopt; + +if (!bloom_filters.slab_size) +return NULL ; + + filter =bloom_filter_slab_at (&bloom_filters, c); + +repo_diff_setup (r, &diffopt); + diffopt.flags.recursive =1 ; +diff_setup_done (&diffopt); + +if (c->parents) +diff_tree_oid (&c->parents->item->object.oid, &c->object.oid,"" , &diffopt); +else +diff_tree_oid (NULL , &c->object.oid,"" , &diffopt); +diffcore_std (&diffopt); + +if (diff_queued_diff.nr <=512 ) { +struct hashmap pathmap; +struct pathmap_hash_entry * e; +struct hashmap_iter iter; +hashmap_init (&pathmap,NULL ,NULL ,0 ); + +for (i =0 ; i < diff_queued_diff.nr; i++) { +const char * path = diff_queued_diff.queue[i]->two->path; +const char * p = path; + +/* +* Add each leading directory of the changed file, i.e. for +* 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so +* the Bloom filter could be used to speed up commands like +* 'git log dir/subdir', too. +* +* Note that directories are added without the trailing '/'. +*/ +do { +char * last_slash =strrchr (p,'/' ); + +FLEX_ALLOC_STR (e, path, path); +hashmap_entry_init (&e->entry,strhash (p)); +hashmap_add (&pathmap, &e->entry); + +if (!last_slash) + last_slash = (char *)p; + *last_slash ='\0' ; + + }while (*p); + +diff_free_filepair (diff_queued_diff.queue[i]); + } + + filter->len = (hashmap_get_size (&pathmap) * settings.bits_per_entry +BITS_PER_WORD -1 ) /BITS_PER_WORD ; + filter->data =xcalloc (filter->len,sizeof (uint64_t )); + +hashmap_for_each_entry (&pathmap, &iter, e, entry) { +struct bloom_key key; +fill_bloom_key (e->path,strlen (e->path), &key, &settings); +add_key_to_filter (&key, filter, &settings); + } + + hashmap_free_entries(&pathmap, struct pathmap_hash_entry, entry); + }else { +for (i =0 ; i < diff_queued_diff.nr; i++) +diff_free_filepair (diff_queued_diff.queue[i]); + filter->data =NULL ; + filter->len =0 ; + } + +free (diff_queued_diff.queue); +DIFF_QUEUE_CLEAR (&diff_queued_diff); + +return filter; +} + +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings) +{ +int i; +uint64_t mod = filter->len *BITS_PER_WORD ; + +if (!mod) +return -1 ; + +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_WORD ; +if (!(filter->data[block_pos] &get_bitmask (hash_mod))) +return 0 ; + } + +return 1 ; +}bloom.h new file +56
-0@@ -0,0 +1,56 @@ +#ifndef BLOOM_H +#define BLOOM_H + +struct commit ; +struct repository ; +struct commit_graph ; + +struct bloom_filter_settings { +uint32_t hash_version; +uint32_t num_hashes; +uint32_t bits_per_entry; +}; + +#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 } +#define BITS_PER_WORD 64 + +/* +* A bloom_filter struct represents a data segment to +* use when testing hash values. The 'len' member +* dictates how many uint64_t entries are stored in +* 'data'. +*/ +struct bloom_filter { +uint64_t *data; +int len; +}; + +/* +* A bloom_key represents the k hash values for a +* given hash input. These can be precomputed and +* stored in a bloom_key for re-use when testing +* against a bloom_filter. +*/ +struct bloom_key { +uint32_t *hashes; +}; + +void load_bloom_filters (void ); + +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings); + +void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings); + +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c); + +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings); + +#endif t/helper/test-bloom.c new file +84
-0@@ -0,0 +1,84 @@ +#include "test-tool.h" +#include "git-compat-util.h" +#include "bloom.h" +#include "test-tool.h" +#include "cache.h" +#include "commit-graph.h" +#include "commit.h" +#include "config.h" +#include "object-store.h" +#include "object.h" +#include "repository.h" +#include "tree.h" + +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; + +static void print_bloom_filter (struct bloom_filter *filter) { +int i; + +if (!filter) { +printf ("No filter.\n" ); +return ; + } +printf ("Filter_Length:%d\n" , filter->len); +printf ("Filter_Data:" ); +for (i =0 ; i < filter->len; i++){ +printf ("%" PRIx64"|" , filter->data[i]); + } +printf ("\n" ); +} + +static void add_string_to_filter (const char *data,struct bloom_filter *filter) { +struct bloom_key key; +int i; + +fill_bloom_key (data,strlen (data), &key, &settings); +printf ("Hashes:" ); +for (i =0 ; i < settings.num_hashes; i++){ +printf ("%08x|" , key.hashes[i]); + } +printf ("\n" ); +add_key_to_filter (&key, filter, &settings); +} + +static void get_bloom_filter_for_commit (const struct object_id *commit_oid) +{ +struct commit *c; +struct bloom_filter *filter; +setup_git_directory (); + c =lookup_commit (the_repository, commit_oid); + filter =get_bloom_filter (the_repository, c); +print_bloom_filter (filter); +} + +int cmd__bloom (int argc,const char **argv) +{ +if (!strcmp (argv[1 ],"generate_filter" )) { +struct bloom_filter filter; +int i =2 ; + filter.len = (settings.bits_per_entry +BITS_PER_WORD -1 ) /BITS_PER_WORD ; + filter.data =xcalloc (filter.len,sizeof (uint64_t )); + +if (!argv[2 ]){ +die ("at least one input string expected" ); + } + +while (argv[i]) { +add_string_to_filter (argv[i], &filter); + i++; + } + +print_bloom_filter (&filter); + } + +if (!strcmp (argv[1 ],"get_filter_for_commit" )) { +struct object_id oid; +const char *end; +if (parse_oid_hex (argv[2 ], &oid, &end)) +die ("cannot parse oid '%s'" , argv[2 ]); +load_bloom_filters (); +get_bloom_filter_for_commit (&oid); + } + +return 0 ; +}t/helper/test-tool.c +1
-0@@ -14,6 +14,7 @@ struct test_cmd { };static struct test_cmd cmds[] = { + {"bloom" , cmd__bloom }, {"chmtime" , cmd__chmtime }, {"config" , cmd__config }, {"ctype" , cmd__ctype },t/helper/test-tool.h +1
-0@@ -4,6 +4,7 @@#define USE_THE_INDEX_COMPATIBILITY_MACROS #include "git-compat-util.h" +int cmd__bloom (int argc,const char **argv);int cmd__chmtime (int argc,const char **argv);int cmd__config (int argc,const char **argv);int cmd__ctype (int argc,const char **argv);t/t0095-bloom.sh new file +113
-0@@ -0,0 +1,113 @@ +#!/bin/sh + +test_description='test bloom.c' +. ./test-lib.sh + +test_expect_success 'get bloom filters for commit with no changes' ' + git init && + git commit --allow-empty -m "c0" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data: + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +' + +test_expect_success 'get bloom filter for commit with 10 changes' ' + rm actual && + rm expect && + mkdir smallDir && + for i in $(test_seq 0 9) + do + echo $i >smallDir/$i + done && + git add smallDir && + git commit -m "commit with 10 changes" && + cat >expect <<-\EOF && + Filter_Length:4 + Filter_Data:508928809087080a|8a7648210804001|4089824400951000|841ab310098051a8| + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +' + +test_expect_success EXPENSIVE 'get bloom filter for commit with 513 changes' ' + rm actual && + rm expect && + mkdir bigDir && + for i in $(test_seq 0 512) + do + echo $i >bigDir/$i + done && + git add bigDir && + git commit -m "commit with 513 changes" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data: + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for empty string' ' + cat >expect <<-\EOF && + Hashes:5615800c|5b966560|61174ab4|66983008|6c19155c|7199fab0|771ae004| + Filter_Length:1 + Filter_Data:11000110001110| + EOF + test-tool bloom generate_filter "" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for whitespace' ' + cat >expect <<-\EOF && + Hashes:1bf014e6|8a91b50b|f9335530|67d4f555|d676957a|4518359f|b3b9d5c4| + Filter_Length:1 + Filter_Data:401004080200810| + EOF + test-tool bloom generate_filter " " >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a root level folder' ' + cat >expect <<-\EOF && + Hashes:1a21016f|fff1c06d|e5c27f6b|cb933e69|b163fd67|9734bc65|7d057b63| + Filter_Length:1 + Filter_Data:aaa800000000| + EOF + test-tool bloom generate_filter "A" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a root level file' ' + cat >expect <<-\EOF && + Hashes:e2d51107|30970605|7e58fb03|cc1af001|19dce4ff|679ed9fd|b560cefb| + Filter_Length:1 + Filter_Data:a8000000000000aa| + EOF + test-tool bloom generate_filter "file.txt" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a deep folder' ' + cat >expect <<-\EOF && + Hashes:864cf838|27f055cd|c993b362|6b3710f7|0cda6e8c|ae7dcc21|502129b6| + Filter_Length:1 + Filter_Data:1c0000600003000| + EOF + test-tool bloom generate_filter "A/B/C/D/E" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a deep file' ' + cat >expect <<-\EOF && + Hashes:07cdf850|4af629c7|8e1e5b3e|d1468cb5|146ebe2c|5796efa3|9abf211a| + Filter_Length:1 + Filter_Data:4020100804010080| + EOF + test-tool bloom generate_filter "A/B/C/D/E/file.txt" >actual && + test_cmp expect actual +' + +test_done
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
In reply to Garima Singh via GitGitGadget[I'm sorry for accidentally sending unfinished version of this email]
Quoted 6 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3].
^^- to add
Quoted 4 lines
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation,
^^- to add
Quoted 2 lines
while not completely open to it at the moment, is flexible enough to allow for tweaking these settings in the future.
I don't know if it is worth it, but I think it should be size of each entry, or in other words number of bits per element in the set, as first value, and number of hashes as second.
About where those values come from. The idea is that you decide on the acceptable number of false positives, for example 1% (or 0.8% given that the values must be integers); that gives you number of bits per element i.e. 10, and from there you can find optimal number of hashes i.e. 7. The references mentioned (and Wikipedia article) have those equations.
Quoted 6 lines
Note: The performance gains we have observed with these values are significant enough that we did not need to tweak these settings. The performance numbers are included in the cover letter of this series and in the message of a subsequent commit where we use Bloom filters in to speed up
git log -- <path>.
All right.
Quoted 4 lines
2. As described in the blog and in [3], we do not need 7 independent hashing functions. We use the Murmur3 hashing scheme. Seed it twice and then combine those to procure an arbitrary number of hash values.
The technique from [3] is called "double hashing" (Algorithm 1 and equation (4) on page 10). Note that in this paper there is also presented "enhanced double hashing" scheme (Algorithm 2 and equation (6)) -- more about it later.
This is a standard technique from the hashing literature, called open addressing with double hashing in hash tables.
This "enhanced double hashing" technique is further analyzed in [6].
[6] Adam Kirsch, Michael Mitzenmacher
"Less Hashing, Same Performance: Building a Better Bloom Filter"
https://www.eecs.harvard.edu/~michaelm/postscripts/esa2006a.pdf
https://doi.org/10.5555/1400123.1400125
Quoted 3 lines
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
If I understand it correctly (but which might not be entirely clear), the filter size in bits is the number of changes^* times 10, rounded up to the nearest multiple of 64.
[*] where the number of changes is the number of changed files (new blob objects) _and_ the number of changed directories (new tree objects, excluding root tree object change).
The interesting corner case, which might be worth specifying explicitly, is what happens in the case there are _no changes_ with respect to first parent (which can happen with either commit created with git commit --allow-empty, or merge created e.g. with git merge --strategy=ours). Is this case represented as Bloom filter of length 0, or as a Bloom filter of length of one 64-bit word which is minimal length composed of all 0's (0x0000000000000000)?
Quoted 3 lines
4. We fill the Bloom filters as (const char *data, int len) pairs as "struct bloom_filter"s in a commit slab.
All right.
Quoted 4 lines
5. The
seed_murmur3method is implemented as described in [5]. It hashes the given data using a given seed and produces a uniformly distributed hash value.
Actually there are two variants of Murmur3 hash, and we should specify which one we are using. There is Murmur3_32 which returns 32-bit value, and Murmur3_128 which returns 128-bit value (which is different for x86 and x64 versions). We use Murmur3_32.
Also, seed_murmur3 is the name given the function, not the name of the method i.e. of a non-cryptographic hash function.
One question that one might as is why use Murmur3 hash instead for example already implemented FNV hash from hashmap implementation (FNV hash i.e. Fowler–Noll–Vo hash function is another non-cryptographic hash function). The answer is of course performance while maintaining good enough quality (and for Bloom filter there is no problem of "hash flooding" denial-of-service like for there is for a hash table -- no need for SipHash or similar).
Quoted 2 lines
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
I would write it in full, similar to subsequent bibliographical entries, that is:
[1] Derrick Stolee
"Supercharging the Git Commit Graph IV: Bloom Filters"
https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
But that is just a matter of style.
Quoted 10 lines
[2] Flavio Bonomi, Michael Mitzenmacher, Rina Panigrahy, Sushil Singh, George Varghese
"An Improved Construction for Counting Bloom Filters" http://theory.stanford.edu/~rinap/papers/esa2006b.pdf https://doi.org/10.1007/11841036_61[3] Peter C. Dillinger and Panagiotis Manolios
"Bloom Filters in Probabilistic Verification"
http://www.ccs.neu.edu/home/pete/pub/Bloom-filters-verification.pdf
https://doi.org/10.1007/978-3-540-30494-4_26
Good, we should be able to find them even if the URL with PDF stops working for some reason.
Quoted 10 lines
[4] Thomas Mueller Graf, Daniel Lemire
"Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters"
https://arxiv.org/abs/1912.08258[5] https://en.wikipedia.org/wiki/MurmurHash#Algorithm
Helped-by Jeff King <[email protected]>Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>
Quoted 13 lines
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
As I wrote earlier, In my opinion this patch could be split into three individual single-functionality pieces, to make it easier to review and aid in bisectability if needed.
1. Add implementation of MurmurHash v3 (32-bit result)
Include tests based on test-tool (creating file similar to the t/helper/test-hash.c, or enhancing to that file) that the implementation is correct, for example that 'The quick brown fox jumps over the lazy dog' or 'Hello world!' with a given seed (for example the default seed of 0) hashes to the same value as other implementations, including the reference implementation in https://github.com/aappleby/smhasher
2. Add implementation of [variant of] Bloom filter
Include generic Bloom filter tests i.e. that it correctly answers "yes" and "maybe" (create filter, save it or print it, then use stored filter), and tests specific to our implementation, namely that the size of the filter behaves as it should.
3. Bloom filter implementation for changed paths
Here include tests that use 'test-tool bloom get_filter_for_commit', that filter for commit with no changes and for commit with more than 512 changes works correctly, that directories are added along the files, etc.
This split would make it easier to distinguish if the problems with tests failing on big-endian architectures is caused by different output from our implementation of Murmur3 hash, different bit sequence in the Bloom filter, or just different printed output of Bloom filter data.
Quoted 14 lines
Makefile +1
-0@@ -695,6 +695,7 @@ X = PROGRAMS += $(patsubst %.o,git-%$X,$(PROGRAM_OBJS)) +TEST_BUILTINS_OBJS += test-bloom.o TEST_BUILTINS_OBJS += test-chmtime.o TEST_BUILTINS_OBJS += test-config.o TEST_BUILTINS_OBJS += test-ctype.o
Makefile LIB_OBJS += base85.o · line 847
Quoted 7 lines
Makefile +1
-0@@ -840,6 +841,7 @@ LIB_OBJS += base85.o LIB_OBJS += bisect.o LIB_OBJS += blame.o LIB_OBJS += blob.o +LIB_OBJS += bloom.o LIB_OBJS += branch.o LIB_OBJS += bulk-checkin.o LIB_OBJS += bundle.o
All right.
Quoted 8 lines
bloom.c new file +2
-0@@ -0,0 +1,228 @@ +#include "git-compat-util.h" +#include "bloom.h"
bloom.c line 12
Quoted 10 lines
bloom.c new file +10
-0+#include "commit-graph.h" +#include "object-store.h" +#include "diff.h" +#include "diffcore.h" +#include "revision.h" +#include "hashmap.h" + +define_commit_slab(bloom_filter_slab, struct bloom_filter); + +struct bloom_filter_slab bloom_filters;
All right, this is needed to store per-commit Bloom filter data (inside-out object style, or in other jargon stored on slab).
bloom.c line 17
Quoted 5 lines
bloom.c new file +5
-0+ +struct pathmap_hash_entry { +struct hashmap_entry entry; +const char path[FLEX_ARRAY ]; +};
O.K. this is used to add gather paths to add them all as elements to the Bloom filter.
bloom.c line 24
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}
Hmmm... both the algoritm on Wikipedia, and reference implementation use rotate *left*, not rotate *right* in the implementation of Murmur3 hash, see
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L23
inline uint32_t rotl32 ( uint32_t x, int8_t r )
{
return (x << r) | (x >> (32 - r));
}
bloom.c line 31
Quoted 7 lines
bloom.c new file +7
-0+ +/* +* Calculate a hash value for the given data using the given seed. +* Produces a uniformly distributed hash value. +* Not considered to be cryptographically secure. +* Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm +**/
^^-- why two _trailing_ asterisks?
Perhaps it would be worth it to add that this hash function is intended to be fast while being reasonably good (it is distributed randomly enough, and it doesn't have too many hash collisions on typical inputs). But this might be too much for a comment.
bloom.c line 32
Quoted 1 line
bloom.c new file +1
-0+static uint32_t seed_murmur3 (uint32_t seed,const char *data,int len)
A few things: name of the function, type of parameters and ordering of parameters.
About the name: when I first saw seed_murmur3() used, I thought it was _setting_ the seed, not that it was returning the 32-bit hash value. Other implementations use either murmur3_32, MurmurHash3_x86_32, or something similar like hashmurmur3_32. If we were to specify that 'seed' is one of parameters, then using this word as part of suffix would be better than using seed_ prefix; if we need it at all.
Because there is 32-bit and 128-bit variants of Murmur3, I think the _32 suffix should be a part of function name.
In short, I think that the name of the function should be murmur3_32, or murmurhash3_32, or possibly murmur3_32_seed, or something like that.
About types of parameters and the return type of function: I understand that 'data' parameter is of type 'const char *', instead of more generic 'const uint8_t*' or 'const void *' because of what we will be using the hash function for. On the other hand taking a look at implementation of FNV hash function in hashmap.{c,h} we see that the 'str*' variants take 'const char *' parameter _without_ length, and 'mem*' variants take 'const void *' parmeter with length of data.
Shouldn't 'len' parameter be of 'size_t' type, rather than 'int'? Both the example implementation in C on Wikipedia page, and implementation in C in qLibc use 'size_t'; the implementation of FNV hash in hashmap in Git also uses 'size_t' (while admittedly the reference implementation in C++ of Austin Appleby uses 'int' type for len parameter).
For 32-bit output variant of Murmur3 hash, using uint32_t as return type is just fine. The '*hash*' functions from hashmap.{c,h} use 'unsigned int' but I think 'uint32_t' is better.
About names and ordering of parameters: the 'seed' or 'hash_seed' parameter should be either first or last; it is a matter of preference. While example implementation on Wikipedia page, Appleby's reference implementation in C++ have 'seed' as last parameter, memihash_cont() from hashmap.c in Git has it as first parameter.
In short: I'm fine with either order (seed parameter first or last), and either name (be it 'seed' or 'hash_seed').
Quoted 9 lines
bloom.c new file +9
-0+{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const uint32_t r1 =15 ; +const uint32_t r2 =13 ; +const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ;
bloom.c line 51
Quoted 10 lines
bloom.c new file +10
-0+const char *tail; + +int len4 = len /sizeof (uint32_t ); + +const uint32_t *blocks = (const uint32_t *)data; + +uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i];
IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness. The pseudo-code description of the algorithm on Wikipedia (above of C code) says that endian swapping is only necessary on big-endian machines (and that it is needed to place the meaningful digits towards the low end of the value, to not be discarded by the modulo arithmetic under overflow).
The original / reference implementation by Austin Appleby in C++ uses getblock32() function for doing the block read... but it doesn't actually implement the endian-swapping on big-endian architecture:
//----------------------------------------------------------------------------- // Block read - if your platform needs to do endian-swapping or can only // handle aligned reads, do the conversion here
FORCE_INLINE uint32_t getblock32 ( const uint32_t * p, int i )
{
return p[i];
}References:
-----------
1. https://en.wikipedia.org/wiki/MurmurHash#Algorithm
2. https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp
bloom.c line 53
Quoted 2 lines
bloom.c new file +2
-0+ k *= c1; + k =rotate_right (k, r1);
It is k ROL r1 / ROTL32(k,15) / (k << 15) | (k >> (32 - 15)) (in other implementations), not rotate_right.
bloom.c line 57
Quoted 4 lines
bloom.c new file +4
-0+ k *= c2; + + seed ^= k; + seed =rotate_right (seed, r2) * m + n;
It is hash ROL r2 / ROTL32(h1,13) / (h << 13) | (h >> (32 - 13)) (in other implementations), not rotate_right.
References:
-----------
1. https://en.wikipedia.org/wiki/MurmurHash#Algorithm
2. https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L94
3. https://github.com/wolkykim/qlibc/blob/master/src/utilities/qhash.c#L258
bloom.c line 60
Quoted 3 lines
bloom.c new file +3
-0+ } + + tail = (data + len4 *sizeof (uint32_t ));
Hmmm... in the pseudocode implementation on Wikipedia this is the place where one needs to respect endianness:
with any remainingBytesInKey do
remainingBytes ← SwapToLittleEndian(remainingBytesInKey)
// Note: Endian swapping is only necessary on big-endian machines.
// The purpose is to place the meaningful digits towards the low end of the value,
// so that these digits have the greatest potential to affect the low range digits
// in the subsequent multiplication. Consider that locating the meaningful digits
// in the high range would produce a greater effect upon the high digits of the
// multiplication, and notably, that such high digits are likely to be discarded
// by the modulo arithmetic under overflow. We don't want that.On the other hand in the reference Appleby's C++ implementation the endian-swapping is [ssumed to be] done only in the loop over data. Either should be enough alone, but doing swapping for remaining bytes only would work, it would be a better solution -- you do swap only once, at the end.
It looks like the Chromium implementation in C by Shane Day (public domain) uses the second solution; well almost, see:
https://chromium.googlesource.com/external/smhasher/+/5b8fd3c31a58b87b80605dca7a64fad6cb3f8a0f/PMurHash.c#189
bloom.c line 73
Quoted 13 lines
bloom.c new file +13
-0+ +switch (len & (sizeof (uint32_t ) -1 )) + { +case 3 : + k1 ^= ((uint32_t )tail[2 ]) <<16 ; +/*-fallthrough*/ +case 2 : + k1 ^= ((uint32_t )tail[1 ]) <<8 ; +/*-fallthrough*/ +case 1 : + k1 ^= ((uint32_t )tail[0 ]) <<0 ; + k1 *= c1; + k1 =rotate_right (k1, r1);
It is remainingBytes ROL r1 / ROTL32(k1,15) / (k << 15) | (k >> (32 - 15)) (in other implementations), not rotate_right. The same references as before.
Quoted 4 lines
bloom.c new file +4
-0+ k1 *= c2; + seed ^= k1; +break ; + }
bloom.c line 87
Quoted 10 lines
bloom.c new file +10
-0+ + seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); + +return seed; +}
In https://public-inbox.org/git/[email protected]/
you posted "[PATCH] Process bloom filter data as 1 byte words". This may avoid the Big-endian vs Little-endian confusion,
that is wrong results on Big-endian architectures, but
it also may slow down the algorithm.
The public domain implementation in PMurHash.c in SMHasher (re)implementation in Chromium (see URL above) fall backs to 1-byte operations only if it doesn't know the endianness (or if it is neither little-endian, nor big-endian, i.e. middle-endian or mixed-endian -- though I doubt that Git works correctly on mixed-endian anyway).
Sidenote: it looks like the current implementation if Murmur hash in Cromium uses MurmurHash3_x86_32, i.e. little-endian unaligned-safe implementation, but prepares data by swapping with StringToLE32
https://github.com/chromium/chromium/blob/master/components/variations/variations_murmur_hash.h
Assuming that the terminating NUL ("\0") character of a c-string is not included in hash calculations, then murmur3_x86_32 hash has the following results (all results are for seed equal 0):
'' -> 0x00000000 ' ' -> 0x7ef49b98 'Hello world!' -> 0x627b0c2c
'The quick brown fox jumps over the lazy dog' -> 0x2e4ff723
C source (from Wikipedia): https://godbolt.org/z/ofa2p8
C++ source (Appleby's): https://godbolt.org/z/BoSt6V
The implementation provided in this patch, with rotate_right (instead of rotate_left) gives, on little-endian machine, different results:
'' -> 0x00000000 ' ' -> 0xd1f27e64 'Hello world!' -> 0xa0791ad7
'The quick brown fox jumps over the lazy dog' -> 0x99f1676c
https://github.com/gitgitgadget/git/blob/e1b076a714d611e59d3d71c89221e41a3427fae4/bloom.c#L21
C source (via GitGitGadget): https://godbolt.org/z/R9s8Tt
Sidenote: While Godbolt.org site supports compiling with many different compilers, including GCC, Clang (LLVM), icc (Intel), MSVC (via Wine), and cross compiling for different platforms, including x86_64, ARM, MIPS, PowerPC, power64 and power64le, AVR, it allows for execution only on x86_64 i.e. little-endian.
We could create test similar to the one for SHA-1 and SHA-256 in t/t0015-hash.sh but for murmur3, for example:
test_expect_success 'test basic Murmur3_32 hash values' '
printf " " | test-tool murmur3_32 0 >actual &&
printf "7ef49b98" >expected &&
test_cmp expected actual &&
...'
or
test_expect_success 'test basic Murmur3_32 hash values' '
printf " " | test-tool murmur3_32 0 >actual &&
grep "7ef49b98" actual &&
...'
bloom.c line 92
Quoted 5 lines
bloom.c new file +5
-0+ +static inline uint64_t get_bitmask (uint32_t pos) +{ +return ((uint64_t )1 ) << (pos & (BITS_PER_WORD -1 )); +}
All right, that creates 64-bit wide mask with 1 bit set to 1 for a 64-bit word within filter data. I just wonder if the trick with the & operation is truly faster than using simpler to understand modulo with compiler optimizations.
static inline uint64_t get_bitmask(uint32_t pos)
{
return ((uint64_t)1) << (pos % BITS_PER_WORD);
}Anyway, looks good (beside naming things, but I don't have better proposal, and the function is static i.e. file-local anyway).
bloom.c line 97
Quoted 5 lines
bloom.c new file +5
-0+ +void load_bloom_filters (void ) +{ +init_bloom_filter_slab (&bloom_filters); +}
Actually this function doesn't load anything. Perhaps it should be named init_bloom_filters() or init_bloom_filters_storage(), or bloom_filters_init()?
bloom.c line 102
Quoted 5 lines
bloom.c new file +5
-0+ +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings)
The last parameter could be of 'const bloom_filter_settings *' type.
bloom.c line 106
Quoted 4 lines
bloom.c new file +4
-0+{ +int i; +const uint32_t seed0 =0x293ae76f ; +const uint32_t seed1 =0x7e646e2c ;
Where did those seeds values came from?
bloom.c line 112
Quoted 6 lines
bloom.c new file +6
-0+const uint32_t hash0 =seed_murmur3 (seed0, data, len); +const uint32_t hash1 =seed_murmur3 (seed1, data, len); + + key->hashes = (uint32_t *)xcalloc (settings->num_hashes,sizeof (uint32_t )); +for (i =0 ; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1;
Note that in [3] authors say that double hashing technique has some problems. For one, we should ensure that hash1 is not zero, and even better that it is odd (which makes it relatively prime to filter size which is multiple of 64). It also suffers from something called "approximate fingerprint collisions".
That is why the define "enhanced double hashing" technique, which does not suffer from those problems (Algorithm 2, page 11/15).
+ for (i = 0; i < settings->num_hashes; i++) {
+ key->hashes[i] = hash0;
+
+ hash0 = hash0 + hash1;
+ hash1 = hash1 + i;
+ }This can also be written in closed form, based on equation (6)
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*(i*i - 1)/6;
In later paper [6] the closed form for "enhanced double hashing" (p. 188) is slightly modified (or rather they use different variant of this technique):
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*i;
This is a variant of more generic "enhanced double hashing", section 5.2 (Enhanced) Double Hashing Schemes (page 199):
h_1(u) + i h_2(u) + f(i) mod m
with f(i) = i^2 = i*i.
They have tested that enhanced double hashing with both f(i) equal i*i and equal i*i*i, and triple hashing technique, and they have found that it performs slightly better than straight double hashing technique (Fig. 1, page 212, section 3).
bloom.c line 117
Quoted 5 lines
bloom.c new file +5
-0+} + +void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings)
Here again the 'settings' argument can be const (as can the 'key' parameter).
bloom.c line 128
Quoted 11 lines
bloom.c new file +11
-0+{ +int i; +uint64_t mod = filter->len *BITS_PER_WORD ; + +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_WORD ; + + filter->data[block_pos] |=get_bitmask (hash_mod); + } +}
All right, bloom_key is an intermediate representation that is used both for creating Bloom filter, and for querying it. In the latter case the same path may be tested against Bloom filters for commits with different number of (blob and tree) changes, and thus against Bloom filters with different lengths. It makes sense for bloom_key to store just values of hash functions, without arithmetics modulo filter size.
Though I think it could be a good idea to create add_str_to_filter() as a wrapper around add_key_to_filter() and fill_bloom_key() functions.
bloom.c line 139
Quoted 11 lines
bloom.c new file +11
-0+ +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c) +{ +struct bloom_filter *filter; +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; +int i; +struct diff_options diffopt; + +if (!bloom_filters.slab_size) +return NULL ;
This is testing that commit slab for per-commit Bloom filters is initialized, isn't it?
First, should we write the condition as
if (!bloom_filters.slab_size)
or would the following be more readable
if (bloom_filters.slab_size == 0)
Second, should we return NULL, or should we just initialize the slab? Or is non-existence of slab treated as a signal that the Bloom filters mechanism is turned off?
bloom.c line 141
Quoted 2 lines
bloom.c new file +2
-0+ + filter =bloom_filter_slab_at (&bloom_filters, c);
Wouldn't it be better to check if the data for commit exists already on the slab, and create the Bloom filter for commit changes only if it does not exists, i.e.:
+ filter = bloom_filter_slab_peek(&bloom_filters, c); + if (filter) + return filter; + filter = bloom_filter_slab_at(&bloom_filters, c);
bloom.c line 145
Quoted 4 lines
bloom.c new file +4
-0+ +repo_diff_setup (r, &diffopt); + diffopt.flags.recursive =1 ; +diff_setup_done (&diffopt);
I'll punt on checking this. Looks all right from first glance, and follows calling sequence in https://github.com/git/git/blob/master/diff.h#L26
bloom.c line 151
Quoted 6 lines
bloom.c new file +6
-0+ +if (c->parents) +diff_tree_oid (&c->parents->item->object.oid, &c->object.oid,"" , &diffopt); +else +diff_tree_oid (NULL , &c->object.oid,"" , &diffopt); +diffcore_std (&diffopt);
All right, that computes first-parent diff (or diff from empty tree of there are no parents).
bloom.c line 153
Quoted 2 lines
bloom.c new file +2
-0+ +if (diff_queued_diff.nr <=512 ) {
First, shouldn't this magic value 512 be hidden behind some symbolic name (some preprocessor constant), e.g. BLOOM_MAX_CHANGES? On the other hand this value is used only once (except tests), so it might be not worth it -- especially coming up with a good name.
Second, there is a minor issue that diff_queue_struct.nr stores the number of filepairs, that is the number of changed files, while the number of elements added to Bloom filter is number of changed blobs and trees. For example if the following files are changed:
sub/dir/file1
sub/file2
then diff_queued_diff.nr is 2, but number of elements to be added to Bloom filter is 4.
sub/dir/file1
sub/file2
sub/dir/
sub/
I'm not sure if it matters in practice.
bloom.c line 157
Quoted 4 lines
bloom.c new file +4
-0+struct hashmap pathmap; +struct pathmap_hash_entry * e; +struct hashmap_iter iter; +hashmap_init (&pathmap,NULL ,NULL ,0 );
Stylistic issue: I have just noticed that here (and in some other places), but not in all cases, you declare pointer types with asterisk cuddled to type name, not to variable name, which contradicts CodingGuidelines:
- When declaring pointers, the star sides with the variable name, i.e. "char *string", not "char* string" or "char * string". This makes it easier to understand code like "char *string, c;".
In this case it should be
+ struct pathmap_hash_entry *e;
In many other places in this patch it is correct, though.
bloom.c line 160
Quoted 3 lines
bloom.c new file +3
-0+ +for (i =0 ; i < diff_queued_diff.nr; i++) { +const char * path = diff_queued_diff.queue[i]->two->path;
Is that correct that we consider only post-image name for storing changes in Bloom filter? Currently if file was renamed (or deleted), it is considered changed, and git log -- <old-name> lists commit that changed file name too.
bloom.c line 161
Quoted 1 line
bloom.c new file +1
-0+const char * p = path;
It should be "const char *" for both.
bloom.c line 174
Quoted 13 lines
bloom.c new file +13
-0+ +/* +* Add each leading directory of the changed file, i.e. for +* 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so +* the Bloom filter could be used to speed up commands like +* 'git log dir/subdir', too. +* +* Note that directories are added without the trailing '/'. +*/ + do { + char* last_slash = strrchr(p, '/'); + + FLEX_ALLOC_STR(e, path, path);
Here first 'path' is the field name, i.e. pathmap_hash_entry.path, second 'path' is the name of local variable, aliased also to 'p'.
bloom.c line 175
Quoted 1 line
bloom.c new file +1
-0+hashmap_entry_init (&e->entry,strhash (p));
I don't know why both 'path' and 'p' are used, while both point to the same memory (and thus have the same contents). It is a bit confusing. See also my previous comment.
bloom.c line 182
Quoted 7 lines
bloom.c new file +7
-0+hashmap_add (&pathmap, &e->entry); + +if (!last_slash) + last_slash = (char *)p; + *last_slash ='\0' ; + + }while (*p);
Looks good. We overwrite '/' with '\0', and gather shrinking pathnames along the way.
bloom.c line 187
Quoted 5 lines
bloom.c new file +5
-0+ +diff_free_filepair (diff_queued_diff.queue[i]); + } + + filter->len = (hashmap_get_size (&pathmap) * settings.bits_per_entry +BITS_PER_WORD -1 ) /BITS_PER_WORD ;
All right, this is division by BITS_PER_WORD, rounding up.
Sidenote: I see now why hashmap was used, it was to be able to get number of unique changes (changed blobs and trees) easily.
bloom.c line 194
Quoted 7 lines
bloom.c new file +7
-0+ filter->data =xcalloc (filter->len,sizeof (uint64_t )); + +hashmap_for_each_entry (&pathmap, &iter, e, entry) { +struct bloom_key key; +fill_bloom_key (e->path,strlen (e->path), &key, &settings); +add_key_to_filter (&key, filter, &settings); + }
All right.
bloom.c line 199
Quoted 5 lines
bloom.c new file +5
-0+ + hashmap_free_entries(&pathmap, struct pathmap_hash_entry, entry); + }else { +for (i =0 ; i < diff_queued_diff.nr; i++) +diff_free_filepair (diff_queued_diff.queue[i]);
All right, that frees the memory taken by diff results.
bloom.c line 201
Quoted 2 lines
bloom.c new file +2
-0+ filter->data =NULL ; + filter->len =0 ;
This needs to be explicitly stated both in the commit message and in the API documentation (in comments) that bloom_filter.len == 0 means "no data", while "no changes" is represented as bloom_filter with len == 1 and *data == (uint64_t)0;
EDIT: actually "no changes" is also represented as bloom_filter with len equal 0, as it turns out.
One possible alternative could be representing "no data" value with Bloom filter of length 1 and all 64 bits set to 1, and "no changes" represented as filter of length 0. This is not unambiguous choice!
bloom.c line 208
Quoted 7 lines
bloom.c new file +7
-0+ } + +free (diff_queued_diff.queue); +DIFF_QUEUE_CLEAR (&diff_queued_diff); + +return filter; +}
All right.
bloom.c line 212
Quoted 4 lines
bloom.c new file +4
-0+ +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings)
It might be good idea to define enum for return values, that is NO_DATA = -1, NO = 0, MAYBE = 1.
bloom.c line 218
Quoted 6 lines
bloom.c new file +6
-0+{ +int i; +uint64_t mod = filter->len *BITS_PER_WORD ; + +if (!mod) +return -1 ;
All right, it is different way of writing
if (filter->len == 0) return -1;
which means "no data" (too many elements for Bloom filter to store).
EDIT: or "no changes".
bloom.c line 224
Quoted 6 lines
bloom.c new file +6
-0+ +for (i =0 ; i < settings->num_hashes; i++) { +uint64_t hash_mod = key->hashes[i] % mod; +uint64_t block_pos = hash_mod /BITS_PER_WORD ; +if (!(filter->data[block_pos] &get_bitmask (hash_mod))) +return 0 ;
All right, if any of hash functions (hash results) doesn't match what is stored in filter, then the key cannot be contained in the Bloom filter.
bloom.c line 227
Quoted 3 lines
bloom.c new file +3
-0+ } + +return 1 ;
All right, otherwise the key is probably included in filter, but may be false positive (with around 1% probability in theory).
This means that if we get value of 0, we can skip checking the diff; we know commit is TREESAME with respect to the path given.
bloom.h line 2
Quoted 9 lines
bloom.c new file +1
-0+}bloom.h new file +2
-0@@ -0,0 +1,56 @@ +#ifndef BLOOM_H +#define BLOOM_H
Should we #include the stdint.h header for uint32_t and uint64_t types?
bloom.h line 7
Quoted 5 lines
bloom.h new file +5
-0+ +struct commit ; +struct repository ; +struct commit_graph ; +
Perhaps we should add block comment for this struct, like there is one for struct bloom_filter below.
bloom.h line 11
Quoted 4 lines
bloom.h new file +4
-0+struct bloom_filter_settings { +uint32_t hash_version; +uint32_t num_hashes; +uint32_t bits_per_entry;
I guess that the type uint32_t was chosen to make it easier to store this information and later retrieve it from the commit-graph file, isn't it? Otherwise those types are much too large for sensible range of values (which would all fit in 8-bits byte).
bloom.h line 15
Quoted 4 lines
bloom.h new file +4
-0+}; + +#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 } +#define BITS_PER_WORD 64
Sidenote: While CodingGuidelines explicitly says:
- We try to support a wide range of C compilers to compile Git with, including old ones. You should not use features from newer C standard, even if your compiler groks them.
There are a few exceptions to this guideline:
[...]
. since mid 2017 with cbc0f81d, we have been using designated
initializers for struct (e.g. "struct t v = { .val = 'a' };").
I don't think however that using designated initializers in DEFAULT_BLOOM_FILTER_SETTINGS is needed, as this preprocessor constant is just below the definition of struct bloom_filter_settings type.
bloom.h line 26
Quoted 11 lines
bloom.h new file +11
-0+ +/* +* A bloom_filter struct represents a data segment to +* use when testing hash values. The 'len' member +* dictates how many uint64_t entries are stored in +* 'data'. +*/ +struct bloom_filter { +uint64_t *data; +int len; +};
Just wondering: is there any advantage or disadvantage to putting 'len' field first (i.e. before 'data') versus putting it after (i.e. after 'data')? Is there a convention that Git uses?
bloom.h line 32
Quoted 6 lines
bloom.h new file +6
-0+ +/* +* A bloom_key represents the k hash values for a +* given hash input. These can be precomputed and +* stored in a bloom_key for re-use when testing +* against a bloom_filter.
We might want to add that the number of hash values is given by Bloom filter settings, and it is assumed to be the same for all bloom_key variables / objects.
Quoted 104 lines
bloom.h new file +24
-0+*/ +struct bloom_key { +uint32_t *hashes; +}; + +void load_bloom_filters (void ); + +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings); + +void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings); + +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c); + +int bloom_filter_contains (struct bloom_filter *filter, +struct bloom_key *key, +struct bloom_filter_settings *settings); + +#endif t/helper/test-bloom.c new file +74
-0@@ -0,0 +1,84 @@ +#include "test-tool.h" +#include "git-compat-util.h" +#include "bloom.h" +#include "test-tool.h" +#include "cache.h" +#include "commit-graph.h" +#include "commit.h" +#include "config.h" +#include "object-store.h" +#include "object.h" +#include "repository.h" +#include "tree.h" + +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; + +static void print_bloom_filter (struct bloom_filter *filter) { +int i; + +if (!filter) { +printf ("No filter.\n" ); +return ; + } +printf ("Filter_Length:%d\n" , filter->len); +printf ("Filter_Data:" ); +for (i =0 ; i < filter->len; i++){ +printf ("%" PRIx64"|" , filter->data[i]); + } +printf ("\n" ); +} + +static void add_string_to_filter (const char *data,struct bloom_filter *filter) { +struct bloom_key key; +int i; + +fill_bloom_key (data,strlen (data), &key, &settings); +printf ("Hashes:" ); +for (i =0 ; i < settings.num_hashes; i++){ +printf ("%08x|" , key.hashes[i]); + } +printf ("\n" ); +add_key_to_filter (&key, filter, &settings); +} + +static void get_bloom_filter_for_commit (const struct object_id *commit_oid) +{ +struct commit *c; +struct bloom_filter *filter; +setup_git_directory (); + c =lookup_commit (the_repository, commit_oid); + filter =get_bloom_filter (the_repository, c); +print_bloom_filter (filter); +} + +int cmd__bloom (int argc,const char **argv) +{ +if (!strcmp (argv[1 ],"generate_filter" )) { +struct bloom_filter filter; +int i =2 ; + filter.len = (settings.bits_per_entry +BITS_PER_WORD -1 ) /BITS_PER_WORD ; + filter.data =xcalloc (filter.len,sizeof (uint64_t )); + +if (!argv[2 ]){ +die ("at least one input string expected" ); + } + +while (argv[i]) { +add_string_to_filter (argv[i], &filter); + i++; + } + +print_bloom_filter (&filter); + } + +if (!strcmp (argv[1 ],"get_filter_for_commit" )) {
t/helper/test-bloom.c line 84
Quoted 10 lines
t/helper/test-bloom.c new file +10
-0+struct object_id oid; +const char *end; +if (parse_oid_hex (argv[2 ], &oid, &end)) +die ("cannot parse oid '%s'" , argv[2 ]); +load_bloom_filters (); +get_bloom_filter_for_commit (&oid); + } + +return 0 ; +}
I won't comment on test-tool code, as I think the Bloom filter and Murmur3 hash tests should be structured differently, which would completely change test-bloom.c code.
Quoted 18 lines
t/helper/test-tool.c +1
-0@@ -14,6 +14,7 @@ struct test_cmd { };static struct test_cmd cmds[] = { + {"bloom" , cmd__bloom }, {"chmtime" , cmd__chmtime }, {"config" , cmd__config }, {"ctype" , cmd__ctype },t/helper/test-tool.h +0
-0
t/helper/test-tool.h line 10
Quoted 7 lines
t/helper/test-tool.h +1
-0@@ -4,6 +4,7 @@#define USE_THE_INDEX_COMPATIBILITY_MACROS #include "git-compat-util.h" +int cmd__bloom (int argc,const char **argv);int cmd__chmtime (int argc,const char **argv);int cmd__config (int argc,const char **argv);int cmd__ctype (int argc,const char **argv);
All right, looks good.
t/t0095-bloom.sh line 3
Quoted 9 lines
t/t0095-bloom.sh new file +3
-0@@ -0,0 +1,113 @@ +#!/bin/sh + +test_description='test bloom.c'
This description is a bit lackluster...
t/t0095-bloom.sh line 15
Quoted 12 lines
t/t0095-bloom.sh new file +12
-0+. ./test-lib.sh + +test_expect_success 'get bloom filters for commit with no changes' ' + git init && + git commit --allow-empty -m "c0" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data: + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'
A few things. First, I wonder why we need to provide object ID; couldn't 'test-tool bloom get_filter_for_commit' parse commit-ish argument, or would it make it too complicated for no reason?
Second, why both "no changes" (here) and "no data" have the same representation of filter with length equal 0? Let's take a look at the code.
For no changes:
filter->len = (hashmap_get_size(&pathmap) * settings.bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
^^^^^^^^^^^^^^^^^^^^^^^^^^ == 0 for no changes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
\-- == 0 + BITS_PER_WORD - 1 for no changes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
\-- == 0 for no changes
filter->data = xcalloc(filter->len, sizeof(uint64_t));
^^^^^^^^^^^ == 0 for no changes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
\-- is NULL or unique pointer that can be passed to free()For more than 512 changed files:
filter->data = NULL; filter->len = 0;
Not being able to distinguish between "no data" and "no changes in the commit" cases means that we would always perform full diff for commit with no changes, unnecessarily. Fortunately there should be no hit to performance, as in this case we need to simply compare objects IDs of top tree to know that there is no change.
If it is a design decision we go with, it should be in my opinion at least explained in the commit message explicitly.
Quoted 8 lines
t/t0095-bloom.sh new file +8
-0+ +test_expect_success 'get bloom filter for commit with 10 changes' ' + rm actual && + rm expect && + mkdir smallDir && + for i in $(test_seq 0 9) + do + echo $i >smallDir/$i
t/t0095-bloom.sh line 33
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ done && + git add smallDir && + git commit -m "commit with 10 changes" && + cat >expect <<-\EOF && + Filter_Length:4 + Filter_Data:508928809087080a|8a7648210804001|4089824400951000|841ab310098051a8| + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'
This test is in my opinion fragile, as it unnecessarily test the implementation details instead of the functionality provided. If we change the hashing scheme (for example going from double hashing to some variant of enhanced double hashing), or change the base hash function (for example from Murmur3_32 to xxHash_64), or change the number of hash functions (perhaps because changing of number of bits per element, and thus optimal number of hash functions from 7 to 6), or change from 64-bit word blocks to 32-bit word blocks, the test would have to be changed.
What I think would be a good test is something like t/t0011-hashmap.sh. For example test that the Bloom filter size scales correctly could look like this:
test_bloom() {
echo "$1" | test-tool bloom $3 >actual &&
echo "$2" >expect &&
test_cmp expect actual
} test_expect_success 'Bloom filter for commit size scales with number of changes' '
mkdir smallDir &&
for i in $(test_seq 0 9)
do
echo $i >smallDir/$i
done &&
git add smallDir &&
git commit -m "commit with 10 changes" &&
HEAD=$(git rev-parse HEAD) &&
cat | test-tool bloom >actual <<-EOF &&
add-commit $HEAD
len-commit $HEAD
EOF
echo "4" >expect &&
test_cmp expect actual'
Quoted 8 lines
t/t0095-bloom.sh new file +8
-0+ +test_expect_success EXPENSIVE 'get bloom filter for commit with 513 changes' ' + rm actual && + rm expect && + mkdir bigDir && + for i in $(test_seq 0 512) + do + echo $i >bigDir/$i
t/t0095-bloom.sh line 51
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ done && + git add bigDir && + git commit -m "commit with 513 changes" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data: + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'
All right, it is good test to have (though perhaps in modified form, less fragile one).
t/t0095-bloom.sh line 61
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ +test_expect_success 'compute bloom key for empty string' ' + cat >expect <<-\EOF && + Hashes:5615800c|5b966560|61174ab4|66983008|6c19155c|7199fab0|771ae004| + Filter_Length:1 + Filter_Data:11000110001110| + EOF + test-tool bloom generate_filter "" >actual && + test_cmp expect actual +'
This might be unnecessarily fragile test, but it might be a good test for double hashing or enhanced double hashing technique. Murmur3 hash on empty data (empty string) always return seed value, so the result of (enhanced) double hashing technique is predictable, given two seed values.
t/t0095-bloom.sh line 71
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ +test_expect_success 'compute bloom key for whitespace' ' + cat >expect <<-\EOF && + Hashes:1bf014e6|8a91b50b|f9335530|67d4f555|d676957a|4518359f|b3b9d5c4| + Filter_Length:1 + Filter_Data:401004080200810| + EOF + test-tool bloom generate_filter " " >actual && + test_cmp expect actual +'
Instead of those two fragile tests (that depend on irrelevant details of the implementation), it would be better to create test similar to those in t/t0011-hashmap.sh, for example:
test_expect_success 'testing Bloom filter querying' '
test_bloom "add abc
add abcdef
check abc
check abcdef
check abcdee
check abcdefghi
len" "maybe
maybe
no
no
1"'
Or maybe something like this:
test_expect_success 'testing Bloom filter querying' '
cat >commands <<\-EOF &&
add abc
add abcdef
check abc
check abcdef
check abcdee
check abcdefghi
len
EOF
cat >expect <<\-EOF &&
maybe
maybe
no
no
1
EOF
test-tool bloom <commands >actual &&
test_cmp expect actual'
Quoted 30 lines
t/t0095-bloom.sh new file +30
-0+ +test_expect_success 'compute bloom key for a root level folder' ' + cat >expect <<-\EOF && + Hashes:1a21016f|fff1c06d|e5c27f6b|cb933e69|b163fd67|9734bc65|7d057b63| + Filter_Length:1 + Filter_Data:aaa800000000| + EOF + test-tool bloom generate_filter "A" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a root level file' ' + cat >expect <<-\EOF && + Hashes:e2d51107|30970605|7e58fb03|cc1af001|19dce4ff|679ed9fd|b560cefb| + Filter_Length:1 + Filter_Data:a8000000000000aa| + EOF + test-tool bloom generate_filter "file.txt" >actual && + test_cmp expect actual +' + +test_expect_success 'compute bloom key for a deep folder' ' + cat >expect <<-\EOF && + Hashes:864cf838|27f055cd|c993b362|6b3710f7|0cda6e8c|ae7dcc21|502129b6| + Filter_Length:1 + Filter_Data:1c0000600003000| + EOF + test-tool bloom generate_filter "A/B/C/D/E" >actual && + test_cmp expect actual +'
t/t0095-bloom.sh line 111
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ +test_expect_success 'compute bloom key for a deep file' ' + cat >expect <<-\EOF && + Hashes:07cdf850|4af629c7|8e1e5b3e|d1468cb5|146ebe2c|5796efa3|9abf211a| + Filter_Length:1 + Filter_Data:4020100804010080| + EOF + test-tool bloom generate_filter "A/B/C/D/E/file.txt" >actual && + test_cmp expect actual +'
What are those meant to test? For the Bloom filter itself it doesn't matter if we add "A/B/C/file.txt" string to filter, or "ABC" string.
What we didn't test is that changed _directories_ are also added to the Bloom filter for a commit. Such test could look like this:
test_expect_success 'changed directories are added to Bloom filter' '
mkdir -p A/B &&
echo "foo" >A/B/file.txt &&
git add A/B/file.txt &&
git commit -m "add A/B/file.txt" &&
HEAD=$(git rev-parse HEAD) && cat >commands <<-EOF &&
add-commit $HEAD
check A/B/file.txt
check A/B
check A
EOF
cat >expect <<\-EOF &&
maybe
maybe
maybe
EOF
test-tool bloom <commands >actual &&
test_cmp expect actual
'
t/t0095-bloom.sh line 113
Quoted 2 lines
t/t0095-bloom.sh new file +2
-0+ +test_done
Thanks for working on this.
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
Quoted 7 lines · Jakub Narebski
Quoted 6 lines
From: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3].
^^- to add
Not sure what this means. Can you please clarify.
Quoted 4 lines
Quoted 3 lines
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation,
^^- to add
Not sure what this means. Can you please clarify.
Quoted 11 lines
Quoted 2 lines
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
If I understand it correctly (but which might not be entirely clear), the filter size in bits is the number of changes^* times 10, rounded up to the nearest multiple of 64.
[*] where the number of changes is the number of changed files (new blob objects) _and_ the number of changed directories (new tree objects, excluding root tree object change).
Yes.
Quoted 8 lines
The interesting corner case, which might be worth specifying explicitly, is what happens in the case there are
_nochanges_with respect to first parent (which can happen with either commit created withgit commit --allow-empty, or merge created e.g. withgit merge --strategy=ours). Is this case represented as Bloom filter of length 0, or as a Bloom filter of length of one 64-bit word which is minimal length composed of all 0's (0x0000000000000000)?
See t0095-bloom.sh: The filter for a commit with no changes is of length 0. I will call it out specifically in the appropriate commit message as well.
Quoted 12 lines
Quoted 2 lines
[1] https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/
I would write it in full, similar to subsequent bibliographical entries, that is:
[1] Derrick Stolee
"Supercharging the Git Commit Graph IV: Bloom Filters"
https://devblogs.microsoft.com/devops/super-charging-the-git-commit-graph-iv-Bloom-filters/But that is just a matter of style.
Sounds good. Will do.
Quoted 24 lines
Quoted 10 lines
[4] Thomas Mueller Graf, Daniel Lemire
"Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters"
https://arxiv.org/abs/1912.08258[5] https://en.wikipedia.org/wiki/MurmurHash#Algorithm
Helped-by Jeff King <[email protected]>Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>Quoted 13 lines
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
Quoted 4 lines
As I wrote earlier, In my opinion this patch could be split into three individual single-functionality pieces, to make it easier to review and aid in bisectability if needed.
Doing this in v3.
Quoted 12 lines
bloom.c line 24
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}Hmmm... both the algoritm on Wikipedia, and reference implementation use rotate *left*, not rotate *right* in the implementation of Murmur3 hash, see
Quoted 9 lines
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L23inline
uint32_trotl32 (uint32_tx,int8_tr )
{
return (x << r) | (x >> (32 - r));
}
Thanks! Fixed this in v3. More on it later.
Quoted 9 lines
bloom.c line 31
Quoted 7 lines
bloom.c new file +7
-0+ +/* +* Calculate a hash value for the given data using the given seed. +* Produces a uniformly distributed hash value. +* Not considered to be cryptographically secure. +* Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm +**/ ^^-- why two _trailing_ asterisks?
Oops. Fixed.
Quoted 5 lines
Quoted 1 line
+static
uint32_tseed_murmur3(uint32_t seed, const char *data, int len)In short, I think that the name of the function should be
murmur3_32, ormurmurhash3_32, or possiblymurmur3_32_seed, or something like that.
Renamed it to murmur3_seeded in v3. The input and output types in the signature make it clear that it is 32-bit version.
Quoted 15 lines
Quoted 15 lines
bloom.c new file +15
-0+{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const uint32_t r1 =15 ; +const uint32_t r2 =13 ; +const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ; +const char *tail; + +int len4 = len /sizeof (uint32_t ); + +const uint32_t *blocks = (const uint32_t *)data; +
Quoted 8 lines
bloom.c line 51
Quoted 4 lines
bloom.c new file +4
-0+uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i];IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness.
Thanks! SZEDER found this on his CI pipeline and we have fixed it to process the data in 1 byte words to avoid hitting any endian-ness issues. See this part of the thread that carries the fix and the related discussion.
https://lore.kernel.org/git/[email protected]/
I will be squashing those changes in appropriately in v3.
Quoted 12 lines
Quoted 12 lines
bloom.c new file +12
-0+ k1 *= c2; + seed ^= k1; +break ; + } + + seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); +
Quoted 9 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ return seed; +}In https://public-inbox.org/git/[email protected]/
you posted "[PATCH] Process bloom filter data as 1 byte words". This may avoid the Big-endian vs Little-endian confusion,
that is wrong results on Big-endian architectures, but
it also may slow down the algorithm.
Oh cool! You have seen that patch. And yes, we understand that it might add a little overhead but at this point it is more important to be correct on all architectures instead of micro-optimizing and introducing different implementations for Little-endian and Big-endian. This would make this series overly complicated. Optimizing the hashing techniques would deserve a series of its own, which we can definitely revisit later.
Quoted 28 lines
The public domain implementation in
PMurHash.cin SMHasher (re)implementation in Chromium (see URL above) fall backs to 1-byte operations only if it doesn't know the endianness (or if it is neither little-endian, nor big-endian, i.e. middle-endian or mixed-endian -- though I doubt that Git works correctly on mixed-endian anyway).Sidenote: it looks like the current implementation if Murmur hash in Cromium uses
MurmurHash3_x86_32, i.e. little-endian unaligned-safe implementation, but prepares data by swapping with StringToLE32
https://github.com/chromium/chromium/blob/master/components/variations/variations_murmur_hash.hAssuming that the terminating NUL ("\0") character of a c-string is not included in hash calculations, then
murmur3_x86_32hash has the following results (all results are for seed equal 0):'' -> 0x00000000 ' ' -> 0x7ef49b98 'Hello world!' -> 0x627b0c2c'The quick brown fox jumps over the lazy dog' ->
0x2e4ff723C source (from Wikipedia): https://godbolt.org/z/ofa2p8
C++ source (Appleby's): https://godbolt.org/z/BoSt6VThe implementation provided in this patch, with
rotate_right(instead ofrotate_left) gives, on little-endian machine, different results:
Quoted 8 lines
'' -> 0x00000000 ' ' -> 0xd1f27e64 'Hello world!' -> 0xa0791ad7'The quick brown fox jumps over the lazy dog' ->
0x99f1676chttps://github.com/gitgitgadget/git/blob/e1b076a714d611e59d3d71c89221e41a3427fae4/bloom.c#L21
C source (via GitGitGadget): https://godbolt.org/z/R9s8Tt
Thanks! This is an excellent catch! Fixing the rotate_right to rotate_left, gives us the same answers as the two implementations you pointed out. I have added the appropriate unit tests in v3 and they match the values you obtained from the other implementations. Thanks a lot for the rigor!
We based our implementation on the pseudo code and not on the sample code presented here: https://en.wikipedia.org/wiki/MurmurHash#Algorithm
We just didn't parse the ROL instruction correctly.
Quoted 11 lines
bloom.c line 97
Quoted 5 lines
bloom.c new file +5
-0+ +void load_bloom_filters (void ) +{ +init_bloom_filter_slab (&bloom_filters); +}Actually this function doesn't load anything. Perhaps it should be named
init_bloom_filters()orinit_bloom_filters_storage(), orbloom_filters_init()?
Changed to init_bloom_filters() in v3. Thanks!
Quoted 8 lines
bloom.c line 102
Quoted 5 lines
bloom.c new file +5
-0+ +void fill_bloom_key (const char *data, +int len, +struct bloom_key *key, +struct bloom_filter_settings *settings)The last parameter could be of 'const
bloom_filter_settings*' type.
Done.
Quoted 7 lines
bloom.c line 106
Quoted 4 lines
bloom.c new file +4
-0+{ +int i; +const uint32_t seed0 =0x293ae76f ; +const uint32_t seed1 =0x7e646e2c ;Where did those seeds values came from?
Those values were chosen randomly. They will be fixed constants for the current hashing version. I will add a note calling this out in the appropriate commit messages and the Documentation in v3.
Quoted 39 lines
bloom.c line 112
Quoted 6 lines
bloom.c new file +6
-0+const uint32_t hash0 =seed_murmur3 (seed0, data, len); +const uint32_t hash1 =seed_murmur3 (seed1, data, len); + + key->hashes = (uint32_t *)xcalloc (settings->num_hashes,sizeof (uint32_t )); +for (i =0 ; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1;Note that in [3] authors say that double hashing technique has some problems. For one, we should ensure that hash1 is not zero, and even better that it is odd (which makes it relatively prime to filter size which is multiple of 64). It also suffers from something called "approximate fingerprint collisions".
That is why the define "enhanced double hashing" technique, which does not suffer from those problems (Algorithm 2, page 11/15).
+ for (i = 0; i < settings->num_hashes; i++) { + key->hashes[i] = hash0; + + hash0 = hash0 + hash1; + hash1 = hash1 + i; + }This can also be written in closed form, based on equation (6)
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*(i*i - 1)/6;In later paper [6] the closed form for "enhanced double hashing" (p. 188) is slightly modified (or rather they use different variant of this technique):
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*i;This is a variant of more generic "enhanced double hashing", section 5.2 (Enhanced) Double Hashing Schemes (page 199):
Quoted 9 lines
h_1(u) + i h_2(u) + f(i) mod mwith f(i) = i^2 = i*i.
They have tested that enhanced double hashing with both f(i) equal i*i and equal i*i*i, and triple hashing technique, and they have found that it performs slightly better than straight double hashing technique (Fig. 1, page 212, section 3).
Thanks for the detailed research here! The hash becoming zero and the approximate fingerprint collision are both extremely rare situations. In both cases, we would just see git log having to diff more trees than if it didn't occur. While these techniques would be great optimizations to do, especially if this implementation gets pulled into more generic hashing applications in the code, we think that for the purposes of the current series - it is not worth it. I say this because Azure Repos has been using this exact hashing technique for several years now without any glitches. And we think it would be great to rely on this battle tested strategy in atleast the first version of this feature.
Quoted 9 lines
bloom.c line 117
Quoted 5 lines
bloom.c new file +5
-0+} + +void add_key_to_filter (struct bloom_key *key, +struct bloom_filter *filter, +struct bloom_filter_settings *settings)Here again the 'settings' argument can be const (as can the 'key' parameter).
Done.
Quoted 15 lines
bloom.c line 139
Quoted 11 lines
bloom.c new file +11
-0+ +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c) +{ +struct bloom_filter *filter; +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; +int i; +struct diff_options diffopt; + +if (!bloom_filters.slab_size) +return NULL ;This is testing that commit slab for per-commit Bloom filters is initialized, isn't it?
Quoted 8 lines
First, should we write the condition as
if (!bloom_filters.slab_size)
or would the following be more readable
if (bloom_filters.slab_size == 0)
Sure. Switched to if (bloom_filter.slab_size == 0) in v3.
Quoted 4 lines
Second, should we return NULL, or should we just initialize the slab? Or is non-existence of slab treated as a signal that the Bloom filters mechanism is turned off?
Yes. We purposefully choose to return NULL and ignore the mechanism overall because we use Bloom filters best effort only.
Quoted 14 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ + if (diff_queued_diff.nr <= 512) {Second, there is a minor issue that diff_queue_struct.nr stores the number of filepairs, that is the number of changed files, while the number of elements added to Bloom filter is number of changed blobs and trees. For example if the following files are changed:
sub/dir/file1
sub/file2then diff_queued_diff.nr is 2, but number of elements to be added to Bloom filter is 4.
Quoted 7 lines
sub/dir/file1
sub/file2
sub/dir/
sub/I'm not sure if it matters in practice.
It does not matter much in practice, since the directories usually tend to collapse across the changes. Still, I will add another limit after creating the hashmap entries to cap at 640 so that we have a maximum of 100 changes in the bloom filter.
We plan to make these values configurable later.
Quoted 9 lines
bloom.c line 157
Quoted 4 lines
bloom.c new file +4
-0+struct hashmap pathmap; +struct pathmap_hash_entry * e; +struct hashmap_iter iter; +hashmap_init (&pathmap,NULL ,NULL ,0 );Stylistic issue: I have just noticed that here (and in some other places), but not in all cases, you declare pointer types with asterisk cuddled to type name, not to variable name, which contradicts CodingGuidelines
Thanks for noticing that! Fixed all of these in v3.
Quoted 9 lines
bloom.c line 160
Quoted 3 lines
bloom.c new file +3
-0+ +for (i =0 ; i < diff_queued_diff.nr; i++) { +const char * path = diff_queued_diff.queue[i]->two->path;Is that correct that we consider only post-image name for storing changes in Bloom filter? Currently if file was renamed (or deleted), it is considered changed, and
git log -- <old-name>lists commit that changed file name too.
The tests in t4216-log-bloom.sh ensure that the output of git log -- <oldname> remains unchanged for renamed and deleted files, when using bloom filters. I realize that I fat fingered over checking the old name, and didn't have an explicit deleted file in the test. I have added them in v3, and the tests pass. So the behavior is preserved and as expected when using Bloom filters. Thanks for paying close attention!
Quoted 21 lines
bloom.c line 161
Quoted 1 line
bloom.c new file +1
-0+const char * p = path;It should be "const char *" for both.
bloom.c line 174
Quoted 13 lines
bloom.c new file +13
-0+ +/* +* Add each leading directory of the changed file, i.e. for +* 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so +* the Bloom filter could be used to speed up commands like +* 'git log dir/subdir', too. +* +* Note that directories are added without the trailing '/'. +*/ + do { + char* last_slash = strrchr(p, '/'); + + FLEX_ALLOC_STR(e, path, path);Here first 'path' is the field name, i.e. pathmap_hash_entry.path, second 'path' is the name of local variable, aliased also to 'p'.
Quoted 6 lines
bloom.c line 175
Quoted 1 line
bloom.c new file +1
-0+hashmap_entry_init (&e->entry,strhash (p));I don't know why both 'path' and 'p' are used, while both point to the same memory (and thus have the same contents). It is a bit confusing. See also my previous comment.
Cleaned up in v3. Thanks!
Quoted 8 lines
bloom.c line 201
Quoted 2 lines
bloom.c new file +2
-0+ filter->data =NULL ; + filter->len =0 ;This needs to be explicitly stated both in the commit message and in the API documentation (in comments) that bloom_filter.len == 0 means "no data", while "no changes" is represented as
bloom_filterwith len == 1 and *data == (uint64_t)0;
Quoted 7 lines
EDIT: actually "no changes" is also represented as
bloom_filterwith len equal 0, as it turns out.One possible alternative could be representing "no data" value with Bloom filter of length 1 and all 64 bits set to 1, and "no changes" represented as filter of length 0. This is not unambiguous choice!
There is no gain in distinguishing between the absence of a filter and a commit having no changes. The effect on git log -- path is the same in both cases. We fall back to the normal diffing algorithm in revision.c. I will make this clearer in the appropriate commit messages and in the Documentation in v3.
Quoted 12 lines
bloom.h line 2
Quoted 9 lines
(quoted diff) +1
-0+}bloom.h new file +2
-0@@ -0,0 +1,56 @@ +#ifndef BLOOM_H +#define BLOOM_H Should we #include the
stdint.hheader foruint32_tanduint64_ttypes?
git-compat-util.h takes care of this.
Quoted 9 lines
bloom.h line 7
Quoted 5 lines
bloom.h new file +5
-0+ +struct commit ; +struct repository ; +struct commit_graph ; +Perhaps we should add block comment for this struct, like there is one for struct
bloom_filterbelow.
Done in v3.
Quoted 10 lines
bloom.h line 11
Quoted 4 lines
bloom.h new file +4
-0+struct bloom_filter_settings { +uint32_t hash_version; +uint32_t num_hashes; +uint32_t bits_per_entry;I guess that the type
uint32_twas chosen to make it easier to store this information and later retrieve it from the commit-graph file, isn't it? Otherwise those types are much too large for sensible range of values (which would all fit in 8-bits byte).
Yes.
Quoted 11 lines
bloom.h line 32
Quoted 6 lines
bloom.h new file +6
-0+ +/* +* A bloom_key represents the k hash values for a +* given hash input. These can be precomputed and +* stored in a bloom_key for re-use when testing +* against a bloom_filter. We might want to add that the number of hash values is given by Bloom filter settings, and it is assumed to be the same for all
bloom_keyvariables / objects.
Incorporated in v3.
Quoted 8 lines
Quoted 8 lines
bloom.h new file +8
-0+. ./test-lib.sh + +test_expect_success 'get bloom filters for commit with no changes' ' + git init && + git commit --allow-empty -m "c0" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data:
Quoted 9 lines
bloom.h line 29
Quoted 4 lines
bloom.h new file +4
-0+EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'A few things. First, I wonder why we need to provide object ID; couldn't 'test-tool bloom
get_filter_for_commit' parse commit-ish argument, or would it make it too complicated for no reason?
Yes it was overkill for what I need in the test.
Quoted 20 lines
Quoted 8 lines
bloom.h new file +8
-0+ +test_expect_success 'get bloom filter for commit with 10 changes' ' + rm actual && + rm expect && + mkdir smallDir && + for i in $(test_seq 0 9) + do + echo $i >smallDir/$ibloom.h line 47
Quoted 10 lines
bloom.h new file +10
-0+ done && + git add smallDir && + git commit -m "commit with 10 changes" && + cat >expect <<-\EOF && + Filter_Length:4 + Filter_Data:508928809087080a|8a7648210804001|4089824400951000|841ab310098051a8| + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'This test is in my opinion fragile, as it unnecessarily test the
Quoted 9 lines
implementation details instead of the functionality provided. If we change the hashing scheme (for example going from double hashing to some variant of enhanced double hashing), or change the base hash function (for example from
Murmur3_32toxxHash_64), or change the number of hash functions (perhaps because changing of number of bits per element, and thus optimal number of hash functions from 7 to 6), or change from 64-bit word blocks to 32-bit word blocks, the test would have to be changed.
Regarding this and the rest of you comments on t0095-log-bloom.sh:
I am tweaking it as necessary but the entire point of these tests is to break for the things you called out. They need to be intricately tied to the current hashing strategy and are hence intended to be fragile so as to catch any subtle or accidental changes in the hashing computation. Any change like the ones you have called out would require a hash version change and all the compatibility reactions that come with it.
I have added more tests around the murmur3_seeded method in v3. Removed some of the redundant ones.
The other more evolved test cases you call out are covered in the e2e integration tests in t4216-log-bloom.sh
Quoted 7 lines
Reviewed-by Jakub Narębski <[email protected]>Thanks for working on this.
Best,
Thank you once again for an excellent and in-depth review of this patch! You have helped make this code so much better!
Cheers!
Garima Singh
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
Quoted 9 lines · Garima Singh
Quoted 7 lines · Jakub Narebski
Quoted 6 lines
From: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3].
^^- to add
Quoted 8 lines
Not sure what this means. Can you please clarify.
Quoted 4 lines
Quoted 3 lines
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation,
^^- to addNot sure what this means. Can you please clarify.
I'm sorry for not being clear. What I wanted to say that in both cases the last line should have ended in either full stop in first case, or comma in second case:
"as described in [2] and [3]."
"The implementation,"
What I wrote (trying to put the arrow below final fullstop or comma) only works when one is using with fixed-width font.
Quoted 2 lines
Quoted 2 lines
Quoted 2 lines
3. The filters are sized according to the number of changes in the each commit, with minimum size of one 64 bit word.
[...]
Quoted 11 lines
Quoted 8 lines
The interesting corner case, which might be worth specifying explicitly, is what happens in the case there are
_nochanges_with respect to first parent (which can happen with either commit created withgit commit --allow-empty, or merge created e.g. withgit merge --strategy=ours). Is this case represented as Bloom filter of length 0, or as a Bloom filter of length of one 64-bit word which is minimal length composed of all 0's (0x0000000000000000)?See
t0095-bloom.sh: The filter for a commit with no changes is of length 0. I will call it out specifically in the appropriate commit message as well.
I have realized this only later that both "no changes" and "no data" uses filter of length 0; which works well because checking the diff if there were no changes is cheap (both tree oids are the same).
Quoted 14 lines
Quoted 14 lines
Quoted 13 lines
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
Quoted 5 lines
Quoted 3 lines
As I wrote earlier, In my opinion this patch could be split into three individual single-functionality pieces, to make it easier to review and aid in bisectability if needed.
Doing this in v3.
Thanks. Though if it makes (much) more work for you, I can work with unsplit patch, no problem.
Quoted 16 lines
Quoted 16 lines
bloom.c line 24
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}Hmmm... both the algoritm on Wikipedia, and reference implementation use rotate *left*, not rotate *right* in the implementation of Murmur3 hash, see
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L23
Quoted 6 lines
Quoted 4 lines
inline
uint32_trotl32 (uint32_tx,int8_tr )
{
return (x << r) | (x >> (32 - r));
}Thanks! Fixed this in v3. More on it later.
Sidenote: If I understand it correctly Bloom filters functionality is included in Scalar [1]. What will happen then with all those Bloom filter chunks in commit-graph files with wrong hash functions?
[1]: https://devblogs.microsoft.com/devops/introducing-scalar/
Quoted 10 lines
Quoted 8 lines
bloom.c line 31
Quoted 7 lines
bloom.c new file +7
-0+ +/* +* Calculate a hash value for the given data using the given seed. +* Produces a uniformly distributed hash value. +* Not considered to be cryptographically secure. +* Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm +**/ ^^-- why two _trailing_ asterisks?
Oops. Fixed.
Often two _leading_ asterisks are used to mark commit as containing docstring in some specific format, like Doxygen. Two _trailing_ asterisks looks like typo.
Quoted 7 lines
Quoted 4 lines
Quoted 1 line
+static
uint32_tseed_murmur3(uint32_t seed, const char *data, int len)In short, I think that the name of the function should be
murmur3_32, ormurmurhash3_32, or possiblymurmur3_32_seed, or something like that.Renamed it to
murmur3_seededin v3. The input and output types in the signature make it clear that it is 32-bit version.
All right, I can agree with that.
Quoted 29 lines
Quoted 15 lines
Quoted 15 lines
bloom.c new file +15
-0+{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const uint32_t r1 =15 ; +const uint32_t r2 =13 ; +const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ; +const char *tail; + +int len4 = len /sizeof (uint32_t ); + +const uint32_t *blocks = (const uint32_t *)data; +Quoted 8 lines
bloom.c line 51
Quoted 4 lines
bloom.c new file +4
-0+uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i];IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness.
Thanks! SZEDER found this on his CI pipeline and we have fixed it to process the data in 1 byte words to avoid hitting any endian-ness issues. See this part of the thread that carries the fix and the related discussion.
https://lore.kernel.org/git/[email protected]/
I will be squashing those changes in appropriately in v3.
[...]
Quoted 21 lines
Quoted 12 lines
Quoted 12 lines
bloom.c new file +12
-0+ k1 *= c2; + seed ^= k1; +break ; + } + + seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); +Quoted 8 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ return seed; +}In https://public-inbox.org/git/[email protected]/
you posted "[PATCH] Process bloom filter data as 1 byte words". This may avoid the Big-endian vs Little-endian confusion,
that is wrong results on Big-endian architectures, but
it also may slow down the algorithm.
Quoted 6 lines
Oh cool! You have seen that patch. And yes, we understand that it might add a little overhead but at this point it is more important to be correct on all architectures instead of micro-optimizing and introducing different implementations for Little-endian and Big-endian. This would make this series overly complicated. Optimizing the hashing techniques would deserve a series of its own, which we can definitely revisit later.
Right, "first make it work, then make it right, and, finally, make it fast.".
Anyway, could you maybe compare performance of Git for old version (operating on 32-bit/4-bytes words) and new version (operating on 1-byte words) file history operation with Bloom filters, to see if it matters or not?
Quoted 11 lines
Quoted 11 lines
The public domain implementation in
PMurHash.cin SMHasher (re)implementation in Chromium (see URL above) fall backs to 1-byte operations only if it doesn't know the endianness (or if it is neither little-endian, nor big-endian, i.e. middle-endian or mixed-endian -- though I doubt that Git works correctly on mixed-endian anyway).Sidenote: it looks like the current implementation if Murmur hash in Chromium uses
MurmurHash3_x86_32, i.e. little-endian unaligned-safe implementation, but prepares data by swapping with StringToLE32
https://github.com/chromium/chromium/blob/master/components/variations/variations_murmur_hash.h
The solution in PMurHash.c in Chromium, and the pseudo-code algorithm on Wikipedia do endian handling only for remaining bytes (while the solution in Appleby's code [beginnings of], and in current above-mentioned Chromium implementation do the conversion for all bytes). I think that handling it only for remaining bytes (for data sizes not being multiply of 32-bits / 4-bytes) is enough; all other operations, that is multiply, rotate, xor and addition do not depend on endianness.
Quoted 24 lines
Quoted 15 lines
Assuming that the terminating NUL ("\0") character of a c-string is not included in hash calculations, then
murmur3_x86_32hash has the following results (all results are for seed equal 0):'' -> 0x00000000 ' ' -> 0x7ef49b98 'Hello world!' -> 0x627b0c2c'The quick brown fox jumps over the lazy dog' ->
0x2e4ff723C source (from Wikipedia): https://godbolt.org/z/ofa2p8
C++ source (Appleby's): https://godbolt.org/z/BoSt6VThe implementation provided in this patch, with
rotate_right(instead ofrotate_left) gives, on little-endian machine, different results:Quoted 8 lines
'' -> 0x00000000 ' ' -> 0xd1f27e64 'Hello world!' -> 0xa0791ad7'The quick brown fox jumps over the lazy dog' ->
0x99f1676chttps://github.com/gitgitgadget/git/blob/e1b076a714d611e59d3d71c89221e41a3427fae4/bloom.c#L21
C source (via GitGitGadget): https://godbolt.org/z/R9s8Tt
Quoted 8 lines
Thanks! This is an excellent catch! Fixing the
rotate_righttorotate_left, gives us the same answers as the two implementations you pointed out. I have added the appropriate unit tests in v3 and they match the values you obtained from the other implementations. Thanks a lot for the rigor!We based our implementation on the pseudo code and not on the sample code presented here: https://en.wikipedia.org/wiki/MurmurHash#Algorithm
We just didn't parse the ROL instruction correctly.
All right, that's good.
Note that the pseudo code includes the following:
with any remainingBytesInKey do
remainingBytes ← SwapToLittleEndian(remainingBytesInKey)
// Note: Endian swapping is only necessary on big-endian machines.
// The purpose is to place the meaningful digits towards the low end of the value,
// so that these digits have the greatest potential to affect the low range digits
// in the subsequent multiplication. Consider that locating the meaningful digits
// in the high range would produce a greater effect upon the high digits of the
// multiplication, and notably, that such high digits are likely to be discarded
// by the modulo arithmetic under overflow. We don't want that.[...]
Quoted 11 lines
Quoted 7 lines
bloom.c line 106
Quoted 4 lines
bloom.c new file +4
-0+{ +int i; +const uint32_t seed0 =0x293ae76f ; +const uint32_t seed1 =0x7e646e2c ;Where did those seeds values came from?
Those values were chosen randomly. They will be fixed constants for the current hashing version. I will add a note calling this out in the appropriate commit messages and the Documentation in v3.
Nice to know.
I wonder if those seed values should be relatively prime, and whether seed1 should be odd (from theoretical point of view).
Quoted 49 lines
Quoted 39 lines
bloom.c line 112
Quoted 6 lines
bloom.c new file +6
-0+const uint32_t hash0 =seed_murmur3 (seed0, data, len); +const uint32_t hash1 =seed_murmur3 (seed1, data, len); + + key->hashes = (uint32_t *)xcalloc (settings->num_hashes,sizeof (uint32_t )); +for (i =0 ; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1;Note that in [3] authors say that double hashing technique has some problems. For one, we should ensure that hash1 is not zero, and even better that it is odd (which makes it relatively prime to filter size which is multiple of 64). It also suffers from something called "approximate fingerprint collisions".
That is why the define "enhanced double hashing" technique, which does not suffer from those problems (Algorithm 2, page 11/15).
+ for (i = 0; i < settings->num_hashes; i++) { + key->hashes[i] = hash0; + + hash0 = hash0 + hash1; + hash1 = hash1 + i; + }This can also be written in closed form, based on equation (6)
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*(i*i - 1)/6;In later paper [6] the closed form for "enhanced double hashing" (p. 188) is slightly modified (or rather they use different variant of this technique):
+ for (i = 0; i < settings->num_hashes; i++) + key->hashes[i] = hash0 + i * hash1 + i*i;This is a variant of more generic "enhanced double hashing", section 5.2 (Enhanced) Double Hashing Schemes (page 199):
Quoted 9 lines
h_1(u) + i h_2(u) + f(i) mod mwith f(i) = i^2 = i*i.
They have tested that enhanced double hashing with both f(i) equal i*i and equal i*i*i, and triple hashing technique, and they have found that it performs slightly better than straight double hashing technique (Fig. 1, page 212, section 3).
Quoted 10 lines
Thanks for the detailed research here! The hash becoming zero and the approximate fingerprint collision are both extremely rare situations. In both cases, we would just see
git loghaving to diff more trees than if it didn't occur. While these techniques would be great optimizations to do, especially if this implementation gets pulled into more generic hashing applications in the code, we think that for the purposes of the current series - it is not worth it. I say this because Azure Repos has been using this exact hashing technique for several years now without any glitches. And we think it would be great to rely on this battle tested strategy in at least the first version of this feature.
All right, that is a good strategy.
I wonder if switching from double hashing to enhanced double hashing (for example the variant with i*i added) would bring any noticeable performance improvements in Git operations (due to less false positives).
Quoted 17 lines
Quoted 17 lines
bloom.c line 139
Quoted 11 lines
bloom.c new file +11
-0+ +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c) +{ +struct bloom_filter *filter; +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; +int i; +struct diff_options diffopt; + +if (!bloom_filters.slab_size) +return NULL ;This is testing that commit slab for per-commit Bloom filters is initialized, isn't it?
First, should we write the condition as
Quoted 8 lines
Quoted 6 lines
if (!bloom_filters.slab_size)
or would the following be more readable
if (bloom_filters.slab_size == 0)Sure. Switched to
if (bloom_filter.slab_size == 0)in v3.
Though either works, and the former looks more like the test if bloom_filters slab are initialized, now that I thought about it a bit. Your choice.
Quoted 7 lines
Quoted 4 lines
Second, should we return NULL, or should we just initialize the slab? Or is non-existence of slab treated as a signal that the Bloom filters mechanism is turned off?
Yes. We purposefully choose to return NULL and ignore the mechanism overall because we use Bloom filters best effort only.
All right.
Quoted 22 lines
Quoted 14 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ + if (diff_queued_diff.nr <= 512) {Second, there is a minor issue that diff_queue_struct.nr stores the number of filepairs, that is the number of changed files, while the number of elements added to Bloom filter is number of changed blobs and trees. For example if the following files are changed:
sub/dir/file1
sub/file2then diff_queued_diff.nr is 2, but number of elements to be added to Bloom filter is 4.
Quoted 7 lines
sub/dir/file1
sub/file2
sub/dir/
sub/I'm not sure if it matters in practice.
Quoted 6 lines
It does not matter much in practice, since the directories usually tend to collapse across the changes. Still, I will add another limit after creating the hashmap entries to cap at 640 so that we have a maximum of 100 changes in the bloom filter.
We plan to make these values configurable later.
I'm not sure if it is truly necessary; we can treat limit on number of changed paths as "best effort" limit on Bloom filter size.
I just wanted to point out the difference.
Side note: I wonder if it would be worth it (in the future) to change handling commits with large amount of changes. I was thinking about switching to soft and hard limit: soft limit would be on the size of the Bloom filter, that is if number of elements times bits per element is greater that size threshold, we don't increase the size of the filter.
This would mean that the false positives ratio (the number of files that are not present but get answer "maybe" instead of "no" out of the filter) would increase, so there would be a need for another hard limit where we decide that it is not worth it, and not store the data for the Bloom filter -- current "no data" case with empty filter with length 0. This hard limit can be imposed on number of changed files, or on number of paths added to filter, or on number of bits set to 1 in the filter (on popcount), or some combination thereof.
[...]
Quoted 9 lines
Quoted 8 lines
bloom.c line 160
Quoted 3 lines
bloom.c new file +3
-0+ +for (i =0 ; i < diff_queued_diff.nr; i++) { +const char * path = diff_queued_diff.queue[i]->two->path;Is that correct that we consider only post-image name for storing changes in Bloom filter? Currently if file was renamed (or deleted), it is considered changed, and
git log -- <old-name>lists commit that changed file name too.
Quoted 6 lines
The tests in
t4216-log-bloom.shensure that the output ofgit log -- <oldname>remains unchanged for renamed and deleted files, when using bloom filters. I realize that I fat fingered over checking the old name, and didn't have an explicit deleted file in the test. I have added them in v3, and the tests pass. So the behavior is preserved and as expected when using Bloom filters. Thanks for paying close attention!
It seems like it shouldn't be working, as we are not adding the old name to Bloom filter, but that only means that I misunderstood how diff_tree_oid() works with default options. It turns out that without explicitly turning on rename detection it shows rename as deletion of old name and addition of new name -- so if tracking deletion works correctly, then tracking renames should work correctly.
So it is in fact correct, which as you said was confirmed by (improved) tests. I think also that if there was a bug in handling renames in this code it would have been detected when running CI with GIT_TEST_COMMIT_GRAPH_BLOOM_FILTERS.
[...]
Quoted 16 lines
Quoted 8 lines
bloom.c line 201
Quoted 2 lines
bloom.c new file +2
-0+ filter->data =NULL ; + filter->len =0 ;This needs to be explicitly stated both in the commit message and in the API documentation (in comments) that bloom_filter.len == 0 means "no data", while "no changes" is represented as
bloom_filterwith len == 1 and *data == (uint64_t)0;Quoted 7 lines
EDIT: actually "no changes" is also represented as
bloom_filterwith len equal 0, as it turns out.One possible alternative could be representing "no data" value with Bloom filter of length 1 and all 64 bits set to 1, and "no changes" represented as filter of length 0. This is not unambiguous choice!
Quoted 5 lines
There is no gain in distinguishing between the absence of a filter and a commit having no changes. The effect on
git log -- pathis the same in both cases. We fall back to the normal diffing algorithm inrevision.c. I will make this clearer in the appropriate commit messages and in the Documentation in v3.
You are right, which I have realized only when reviewing subsequent patches in the series.
In the absence of a filter, the "no data" case, we need to fall back to examining the diff anyway.
In the case of commit having no changes, the "no changes" case, computing the diff is cheap because Git can realize that both trees have the same oid. So we do not lose performance this way, and we avoid special-casing it (avoiding branching) when computing the Bloom filter, if the "no change" case was represented by filter of length 1 and all zero bits as data. Comparing tree oids and matching first hash function in bloom_key against all zeros Bloom filter should be, I think, of similar performance.
[...]
Quoted 17 lines
Quoted 8 lines
Quoted 8 lines
+. ./test-lib.sh
t/t0095-bloom.sh new file +7
-0+ +test_expect_success 'get bloom filters for commit with no changes' ' + git init && + git commit --allow-empty -m "c0" && + cat >expect <<-\EOF && + Filter_Length:0 + Filter_Data:Quoted 8 lines
t/t0095-bloom.sh line 15
Quoted 4 lines
t/t0095-bloom.sh new file +4
-0+ EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'A few things. First, I wonder why we need to provide object ID; couldn't 'test-tool bloom
get_filter_for_commit' parse commit-ish argument, or would it make it too complicated for no reason?
Quoted 1 line
Yes it was overkill for what I need in the test.
All right, I agree with that.
Quoted 29 lines
Quoted 20 lines
Quoted 8 lines
t/t0095-bloom.sh new file +8
-0+ +test_expect_success 'get bloom filter for commit with 10 changes' ' + rm actual && + rm expect && + mkdir smallDir && + for i in $(test_seq 0 9) + do + echo $i >smallDir/$it/t0095-bloom.sh line 33
Quoted 10 lines
t/t0095-bloom.sh new file +10
-0+ done && + git add smallDir && + git commit -m "commit with 10 changes" && + cat >expect <<-\EOF && + Filter_Length:4 + Filter_Data:508928809087080a|8a7648210804001|4089824400951000|841ab310098051a8| + EOF + test-tool bloom get_filter_for_commit "$(git rev-parse HEAD)" >actual && + test_cmp expect actual +'This test is in my opinion fragile, as it unnecessarily test the
Quoted 8 lines
implementation details instead of the functionality provided. If we change the hashing scheme (for example going from double hashing to some variant of enhanced double hashing), or change the base hash function (for example from
Murmur3_32toxxHash_64), or change the number of hash functions (perhaps because changing of number of bits per element, and thus optimal number of hash functions from 7 to 6), or change from 64-bit word blocks to 32-bit word blocks, the test would have to be changed.
Quoted 8 lines
Regarding this and the rest of you comments on
t0095-log-bloom.sh:I am tweaking it as necessary but the entire point of these tests is to break for the things you called out. They need to be intricately tied to the current hashing strategy and are hence intended to be fragile so as to catch any subtle or accidental changes in the hashing computation. Any change like the ones you have called out would require a hash version change and all the compatibility reactions that come with it.
All right, if we assume that commit-graph is not something purely local^*, and we need iteroperability, then this test is necessary and is necessarily fragile.
*. This may happen because the repository and the commit-graph file in
it is on network disk, and accessed by hosts with different endianness. Or in the future (or possibly now, if one is using Scalar) the commit-graph file can be sent together with packfile during the fetch operation.
On the other hand testing the functionality of Murmur hash, and of Bloom filter would help finding possible troubles if we decide in the future to change the algorithm details (change hash function, and/or move from double hashing to enhanced double hashing, and/or change how commits with large number of changes are handled, or even switching to xor filters [1]).
[1]: Graf, Thomas Mueller; Lemire, Daniel (2019), "Xor Filters: Faster and Smaller Than Bloom and Cuckoo Filters", https://arxiv.org/abs/1912.08258
Quoted 2 lines
I have added more tests around the
murmur3_seededmethod in v3. Removed some of the redundant ones.
There is another test that might be worth adding (see the comment below why), namely one test checking that bloom_key is computed as expected.
Quoted 2 lines
The other more evolved test cases you call out are covered in the e2e integration tests in
t4216-log-bloom.sh
All right, but there is another issue to consider. Good tests should not only catch the breakage, but also help to detect where the bug is. That is one of advantages that unit tests (like the ones I have proposed) have over end-to-end functional tests. They are also often faster.
On the other hand e2e tests can catch problems with integration, and actually check that the user-visible behaviour is as expected.
Best,
--
Jakub Narębski
Quoted 9 lines
Quoted 6 lines
Reviewed-by Jakub Narębski <[email protected]>Thanks for working on this.
Best,
Thank you once again for an excellent and in-depth review of this patch! You have helped make this code so much better!
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
Quoted 23 lines · Jakub Narebski
Quoted 9 lines · Garima Singh
Quoted 7 lines · Jakub Narebski
Quoted 6 lines
From: Garima Singh <[email protected]>
Add the core Bloom filter logic for computing the paths changed between a commit and its first parent. For details on what Bloom filters are and how they work, please refer to Dr. Derrick Stolee's blog post [1]. It provides a concise explaination of the adoption of Bloom filters as described in [2] and [3].
^^- to addQuoted 8 lines
Not sure what this means. Can you please clarify.
Quoted 4 lines
Quoted 3 lines
1. We currently use 7 and 10 for the number of hashes and the size of each entry respectively. They served as great starting values, the mathematical details behind this choice are described in [1] and [4]. The implementation,
^^- to addNot sure what this means. Can you please clarify.
I'm sorry for not being clear. What I wanted to say that in both cases the last line should have ended in either full stop in first case, or comma in second case:
Quoted 7 lines
"as described in [2] and [3]."
"The implementation,"
What I wrote (trying to put the arrow below final fullstop or comma) only works when one is using with fixed-width font.
Aah. Cool. Thanks!
Quoted 14 lines
Quoted 14 lines
Quoted 14 lines
Quoted 13 lines
--- Makefile | 2 + bloom.c | 228 ++++++++++++++++++++++++++++++++++++++++++ bloom.h | 56 +++++++++++ t/helper/test-bloom.c | 84 ++++++++++++++++ t/helper/test-tool.c | 1 + t/helper/test-tool.h | 1 + t/t0095-bloom.sh | 113 +++++++++++++++++++++ 7 files changed, 485 insertions(+) create mode 100644 bloom.c create mode 100644 bloom.h create mode 100644 t/helper/test-bloom.c create mode 100755 t/t0095-bloom.sh
Quoted 9 lines
Quoted 5 lines
Quoted 3 lines
As I wrote earlier, In my opinion this patch could be split into three individual single-functionality pieces, to make it easier to review and aid in bisectability if needed.
Doing this in v3.
Thanks. Though if it makes (much) more work for you, I can work with unsplit patch, no problem.
Thanks! That's great! Splitting the patches will add some overhead. I will try and do it provided it does not delay getting v3 on the list.
Quoted 21 lines
Quoted 21 lines
Quoted 20 lines
bloom.c line 24
Quoted 7 lines
bloom.c new file +7
-0+ +static uint32_t rotate_right (uint32_t value,int32_t count) +{ +uint32_t mask =8 *sizeof (uint32_t ) -1 ; + count &= mask; +return ((value >> count) | (value << ((-count) & mask))); +}Hmmm... both the algoritm on Wikipedia, and reference implementation use rotate *left*, not rotate *right* in the implementation of Murmur3 hash, see
https://en.wikipedia.org/wiki/MurmurHash#Algorithm
https://github.com/aappleby/smhasher/blob/master/src/MurmurHash3.cpp#L23inline
uint32_trotl32 (uint32_tx,int8_tr )
{
return (x << r) | (x >> (32 - r));
}
Quoted 8 lines
Quoted 1 line
Thanks! Fixed this in v3. More on it later.
Sidenote: If I understand it correctly Bloom filters functionality is included in Scalar [1]. What will happen then with all those Bloom filter chunks in commit-graph files with wrong hash functions?
[1]: https://devblogs.microsoft.com/devops/introducing-scalar/
It is not included in Scalar. Scalar will write to the commit-graph in the background using the features available in the git version it is working with. It will update to include changed path Bloom filters when they are available in git. We are not taking the Bloom filter into microsoft/git until the format is approved and accepted by the core git community.
Quoted 59 lines
Quoted 29 lines
Quoted 15 lines
Quoted 15 lines
bloom.c new file +15
-0+{ +const uint32_t c1 =0xcc9e2d51 ; +const uint32_t c2 =0x1b873593 ; +const uint32_t r1 =15 ; +const uint32_t r2 =13 ; +const uint32_t m =5 ; +const uint32_t n =0xe6546b64 ; +int i; +uint32_t k1 =0 ; +const char *tail; + +int len4 = len /sizeof (uint32_t ); + +const uint32_t *blocks = (const uint32_t *)data; +Quoted 8 lines
bloom.c line 51
Quoted 4 lines
bloom.c new file +4
-0+uint32_t k; +for (i =0 ; i < len4; i++) + { + k = blocks[i];IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness.
Thanks! SZEDER found this on his CI pipeline and we have fixed it to process the data in 1 byte words to avoid hitting any endian-ness issues. See this part of the thread that carries the fix and the related discussion.
https://lore.kernel.org/git/[email protected]/
I will be squashing those changes in appropriately in v3.[...]
Quoted 21 lines
Quoted 12 lines
Quoted 12 lines
bloom.c new file +12
-0+ k1 *= c2; + seed ^= k1; +break ; + } + + seed ^= (uint32_t )len; + seed ^= (seed >>16 ); + seed *=0x85ebca6b ; + seed ^= (seed >>13 ); + seed *=0xc2b2ae35 ; + seed ^= (seed >>16 ); +Quoted 8 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ return seed; +}In https://public-inbox.org/git/[email protected]/
you posted "[PATCH] Process bloom filter data as 1 byte words". This may avoid the Big-endian vs Little-endian confusion,
that is wrong results on Big-endian architectures, but
it also may slow down the algorithm.Quoted 6 lines
Oh cool! You have seen that patch. And yes, we understand that it might add a little overhead but at this point it is more important to be correct on all architectures instead of micro-optimizing and introducing different implementations for Little-endian and Big-endian. This would make this series overly complicated. Optimizing the hashing techniques would deserve a series of its own, which we can definitely revisit later.
Quoted 7 lines
Right, "first make it work, then make it right, and, finally, make it fast.".
Anyway, could you maybe compare performance of Git for old version (operating on 32-bit/4-bytes words) and new version (operating on 1-byte words) file history operation with Bloom filters, to see if it matters or not?
We chose to switch to 1 byte words for correctness, not performance. Also, this specific implementation choice is a very small portion of the end to end time spent computing and writing Bloom filters. We run two murmur3 hashes per path, which is one path per git log query; and one path per change after parsing trees to compute a diff. Measuring performance and micro-optimizing is not worth the effort and/or trading in the simplicity here.
Quoted 21 lines
Quoted 21 lines
Quoted 21 lines
bloom.c line 139
Quoted 11 lines
bloom.c new file +11
-0+ +struct bloom_filter *get_bloom_filter (struct repository *r, +struct commit *c) +{ +struct bloom_filter *filter; +struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ; +int i; +struct diff_options diffopt; + +if (!bloom_filters.slab_size) +return NULL ;This is testing that commit slab for per-commit Bloom filters is initialized, isn't it?
First, should we write the condition as
if (!bloom_filters.slab_size)
or would the following be more readable
Quoted 9 lines
Quoted 4 lines
Quoted 2 lines
if (bloom_filters.slab_size == 0)Sure. Switched to
if (bloom_filter.slab_size == 0)in v3.Though either works, and the former looks more like the test if
bloom_filtersslab are initialized, now that I thought about it a bit. Your choice.
:)
Quoted 27 lines
Quoted 27 lines
Quoted 14 lines
Review
Quoted 2 lines
(quoted diff) +2
-0+ + if (diff_queued_diff.nr <= 512) {Second, there is a minor issue that diff_queue_struct.nr stores the number of filepairs, that is the number of changed files, while the number of elements added to Bloom filter is number of changed blobs and trees. For example if the following files are changed:
sub/dir/file1
sub/file2then diff_queued_diff.nr is 2, but number of elements to be added to Bloom filter is 4.
Quoted 7 lines
sub/dir/file1
sub/file2
sub/dir/
sub/I'm not sure if it matters in practice.
It does not matter much in practice, since the directories usually tend to collapse across the changes. Still, I will add another limit after creating the hashmap entries to cap at 640 so that we have a maximum of 100 changes in the bloom filter.
Quoted 7 lines
Quoted 1 line
We plan to make these values configurable later.
I'm not sure if it is truly necessary; we can treat limit on number of changed paths as "best effort" limit on Bloom filter size.
I just wanted to point out the difference.
Sure. Not doing this for v3. Glad it got discussed here though!
Quoted 16 lines
Side note: I wonder if it would be worth it (in the future) to change handling commits with large amount of changes. I was thinking about switching to soft and hard limit: soft limit would be on the size of the Bloom filter, that is if number of elements times bits per element is greater that size threshold, we don't increase the size of the filter.
This would mean that the false positives ratio (the number of files that are not present but get answer "maybe" instead of "no" out of the filter) would increase, so there would be a need for another hard limit where we decide that it is not worth it, and not store the data for the Bloom filter -- current "no data" case with empty filter with length 0. This hard limit can be imposed on number of changed files, or on number of paths added to filter, or on number of bits set to 1 in the filter (on popcount), or some combination thereof.
Quoted 1 line
[...]
Could be considered in the future. Doesn't make the cut for the current series though.
Thanks
Garima Singh
Re: [PATCH v2 02/11] bloom: core Bloom filter implementation for changed paths
Quoted 4 lines · Garima Singh
Quoted 3 lines · Jakub Narebski
Quoted 2 lines · Garima Singh
Quoted 1 line · Jakub Narebski
Quoted 1 line
From: Garima Singh <[email protected]>
[...]
Quoted 33 lines
Quoted 25 lines
Quoted 9 lines
Quoted 3 lines
IMPORTANT: There is a comment around there in the example implementation in C on Wikipedia that this operation above is a source of differing results across endianness.
Thanks! SZEDER found this on his CI pipeline and we have fixed it to process the data in 1 byte words to avoid hitting any endian-ness issues. See this part of the thread that carries the fix and the related discussion.
https://lore.kernel.org/git/[email protected]/
I will be squashing those changes in appropriately in v3.[...]
Quoted 7 lines
Quoted 6 lines
In https://public-inbox.org/git/[email protected]/
you posted "[PATCH] Process bloom filter data as 1 byte words". This may avoid the Big-endian vs Little-endian confusion,
that is wrong results on Big-endian architectures, but
it also may slow down the algorithm.Quoted 6 lines
Oh cool! You have seen that patch. And yes, we understand that it might add a little overhead but at this point it is more important to be correct on all architectures instead of micro-optimizing and introducing different implementations for Little-endian and Big-endian. This would make this series overly complicated. Optimizing the hashing techniques would deserve a series of its own, which we can definitely revisit later.
Quoted 7 lines
Right, "first make it work, then make it right, and, finally, make it fast.".
Anyway, could you maybe compare performance of Git for old version (operating on 32-bit/4-bytes words) and new version (operating on 1-byte words) file history operation with Bloom filters, to see if it matters or not?
Quoted 6 lines
We chose to switch to 1 byte words for correctness, not performance. Also, this specific implementation choice is a very small portion of the end to end time spent computing and writing Bloom filters. We run two murmur3 hashes per path, which is one path per
git logquery; and one path per change after parsing trees to compute a diff. Measuring performance and micro-optimizing is not worth the effort and/or trading in the simplicity here.
All right.
I still think that adding to_le32() invocation before the part that processes remaining bytes (the 'switch' instruction in v2 code), just like in pseudo-code on Wikipedia:
with any remainingBytesInKey do
remainingBytes ← SwapToLittleEndian(remainingBytesInKey)
would be enough to have correct results regardlless of endianness.
As I wrote
JN> The solution in PMurHash.c in Chromium [1], and the pseudo-code algorithm on JN> Wikipedia do endian handling only for remaining bytes (while the JN> beginnings of solution in Appleby's code, and solution in current JN> above-mentioned Chromium implementation do the conversion for all JN> bytes). I think that handling it only for remaining bytes (for data JN> sizes not being multiply of 32-bits / 4-bytes) is enough; all other JN> operations, that is multiply, rotate, xor and addition do not depend on JN> endianness.
If you have access to, or can run code on some big-endian architecture, it should be easy enough to check it.
Anyway, if you decide on 1-byte at time implementation, please put a comment about 32-bit chunk implementation.
Quoted 15 lines
Quoted 15 lines
Side note: I wonder if it would be worth it (in the future) to change handling commits with large amount of changes. I was thinking about switching to soft and hard limit: soft limit would be on the size of the Bloom filter, that is if number of elements times bits per element is greater that size threshold, we don't increase the size of the filter.
This would mean that the false positives ratio (the number of files that are not present but get answer "maybe" instead of "no" out of the filter) would increase, so there would be a need for another hard limit where we decide that it is not worth it, and not store the data for the Bloom filter -- current "no data" case with empty filter with length 0. This hard limit can be imposed on number of changed files, or on number of paths added to filter, or on number of bits set to 1 in the filter (on popcount), or some combination thereof.
Quoted 4 lines
Quoted 1 line
[...]
Could be considered in the future. Doesn't make the cut for the current series though.
Right.
Best,
Signature · 1 line
Jakub Narębski
PATCH v2 3/11 diff: halt tree-diff early after max_changes
In reply to Garima Singh via GitGitGadgetFrom: Derrick Stolee <[email protected]>
When computing the changed-paths bloom filters for the commit-graph, we limit the size of the filter by restricting the number of paths in the diff. Instead of computing a large diff and then ignoring the result, it is better to halt the diff computation early.
Create a new "max_changes" option in struct diff_options. If non-zero, then halt the diff computation after discovering strictly more changed paths. This includes paths corresponding to trees that change.
Use this max_changes option in the bloom filter calculations. This reduces the time taken to compute the filters for the Linux kernel repo from 2m50s to 2m35s. On a large internal repository with ~500 commits that perform tree-wide changes, the time reduced from 6m15s to 3m48s.
--- bloom.c | 4 +++- diff.h | 5 +++++ tree-diff.c | 6 ++++++ 3 files changed, 14 insertions(+), 1 deletion(-)
bloom.c +3 -1
@@ -134,6 +134,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;int i;struct diff_options diffopt; +int max_changes =512 ;if (!bloom_filters.slab_size)return NULL ;
@@ -142,6 +143,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,repo_diff_setup (r, &diffopt); diffopt.flags.recursive =1 ; + diffopt.max_changes = max_changes;diff_setup_done (&diffopt);if (c->parents)
@@ -150,7 +152,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,diff_tree_oid (NULL , &c->object.oid,"" , &diffopt);diffcore_std (&diffopt); -if (diff_queued_diff.nr <=512 ) { +if (diff_queued_diff.nr <= max_changes) {struct hashmap pathmap;struct pathmap_hash_entry * e;struct hashmap_iter iter;
diff.h +5 -0
@@ -285,6 +285,11 @@ struct diff_options {/* Number of hexdigits to abbreviate raw format output to. */ int abbrev; +/* If non-zero, then stop computing after this many changes. */ +int max_changes; +/* For internal use only. */ +int num_changes; +int ita_invisible_in_index;/* white-space error highlighting */ #define WSEH_NEW (1<<12)
tree-diff.c +6 -0
@@ -434,6 +434,9 @@ static struct combine_diff_path *ll_diff_tree_paths(if (diff_can_quit_early (opt))break ; +if (opt->max_changes && opt->num_changes > opt->max_changes) +break ; +if (opt->pathspec.nr) {skip_uninteresting (&t, base, opt);for (i =0 ; i < nparent; i++)
@@ -518,6 +521,7 @@ static struct combine_diff_path *ll_diff_tree_paths(/* t↓ */ update_tree_entry (&t); + opt->num_changes++; }/* t > p[imin] */
@@ -535,6 +539,7 @@ static struct combine_diff_path *ll_diff_tree_paths( skip_emit_tp:/* ∀ pi=p[imin] pi↓ */ update_tp_entries (tp, nparent); + opt->num_changes++; } }
@@ -552,6 +557,7 @@ struct combine_diff_path *diff_tree_paths( const struct object_id **parents_oid, int nparent, struct strbuf *base, struct diff_options *opt) { + opt->num_changes = 0; p =ll_diff_tree_paths (p, oid, parents_oid, nparent, base, opt);/*
Signature · 1 line
gitgitgadget
Re: [PATCH v2 03/11] diff: halt tree-diff early after max_changes
Quoted 6 lines · Derrick Stolee via GitGitGadget
From: Derrick Stolee <[email protected]>
When computing the changed-paths bloom filters for the commit-graph, we limit the size of the filter by restricting the number of paths in the diff. Instead of computing a large diff and then ignoring the result, it is better to halt the diff computation early.
Good idea.
Quoted 4 lines
Create a new "
max_changes" option in structdiff_options. If non-zero, then halt the diff computation after discovering strictly more changed paths. This includes paths corresponding to trees that change.
All right; also, it doesn't need to be exact, though it would be good if it was.
512 changed paths (changed files) usually generate more than 512 elements to be added to the Bloom filter (changed directories and files), anyway.
Quoted 6 lines
Use this
max_changesoption in the bloom filter calculations. This reduces the time taken to compute the filters for the Linux kernel repo from 2m50s to 2m35s. On a large internal repository with ~500 commits that perform tree-wide changes, the time reduced from 6m15s to 3m48s.
I wonder if there is some large open-source project with many commits performing tree-wide changes, that is with many commits with more than 512 changed files with respect to the first parent.
Maybe https://github.com/whosonfirst-data/whosonfirst-data-venue-us-ny
from "Top Ten Worst Repositories to host on GitHub - Git Merge 2017" could be a good repository to test ;-)
Quoted 3 lines
Signed-off-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>
Looks good to me, but that is from cursory examination. Don't know the area to say anything more.
Quoted 89 lines
--- bloom.c | 4 +++- diff.h | 5 +++++ tree-diff.c | 6 ++++++ 3 files changed, 14 insertions(+), 1 deletion(-)bloom.c +3
-1@@ -134,6 +134,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;int i;struct diff_options diffopt; +int max_changes =512 ;if (!bloom_filters.slab_size)return NULL ;@@ -142,6 +143,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,repo_diff_setup (r, &diffopt); diffopt.flags.recursive =1 ; + diffopt.max_changes = max_changes;diff_setup_done (&diffopt);if (c->parents)@@ -150,7 +152,7 @@ struct bloom_filter *get_bloom_filter(struct repository *r,diff_tree_oid (NULL , &c->object.oid,"" , &diffopt);diffcore_std (&diffopt); -if (diff_queued_diff.nr <=512 ) { +if (diff_queued_diff.nr <= max_changes) {struct hashmap pathmap;struct pathmap_hash_entry * e;struct hashmap_iter iter;diff.h +5
-0@@ -285,6 +285,11 @@ struct diff_options {/* Number of hexdigits to abbreviate raw format output to. */ int abbrev; +/* If non-zero, then stop computing after this many changes. */ +int max_changes; +/* For internal use only. */ +int num_changes; +int ita_invisible_in_index;/* white-space error highlighting */ #define WSEH_NEW (1<<12)tree-diff.c +6
-0@@ -434,6 +434,9 @@ static struct combine_diff_path *ll_diff_tree_paths(if (diff_can_quit_early (opt))break ; +if (opt->max_changes && opt->num_changes > opt->max_changes) +break ; +if (opt->pathspec.nr) {skip_uninteresting (&t, base, opt);for (i =0 ; i < nparent; i++)@@ -518,6 +521,7 @@ static struct combine_diff_path *ll_diff_tree_paths(/* t↓ */ update_tree_entry (&t); + opt->num_changes++; }/* t > p[imin] */ @@ -535,6 +539,7 @@ static struct combine_diff_path *ll_diff_tree_paths( skip_emit_tp:/* ∀ pi=p[imin] pi↓ */ update_tp_entries (tp, nparent); + opt->num_changes++; } }@@ -552,6 +557,7 @@ struct combine_diff_path *diff_tree_paths( const struct object_id **parents_oid, int nparent, struct strbuf *base, struct diff_options *opt) { + opt->num_changes = 0; p =ll_diff_tree_paths (p, oid, parents_oid, nparent, base, opt);/*
Re: [PATCH v2 03/11] diff: halt tree-diff early after max_changes
Quoted 10 lines · Jakub Narebski
Quoted 7 lines · Derrick Stolee via GitGitGadget
From: Derrick Stolee <[email protected]>
Use this
max_changesoption in the bloom filter calculations. This reduces the time taken to compute the filters for the Linux kernel repo from 2m50s to 2m35s. On a large internal repository with ~500 commits that perform tree-wide changes, the time reduced from 6m15s to 3m48s.
Quoted 8 lines
I wonder if there is some large open-source project with many commits performing tree-wide changes, that is with many commits with more than 512 changed files with respect to the first parent.
Maybe https://github.com/whosonfirst-data/whosonfirst-data-venue-us-ny
from "Top Ten Worst Repositories to host on GitHub - Git Merge 2017" could be a good repository to test ;-)
Thanks for the suggestion! I will see if any of these repos gives us a good test bed and add the perf improvement numbers in the appropriate commit messages in v3.
Cheers!
Garima Singh
PATCH v2 4/11 commit-graph: compute Bloom filters for changed paths
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Compute Bloom filters for the paths that changed between a commit and its first parent using the implementation in bloom.c, when the COMMIT_GRAPH_WRITE_CHANGED_PATHS flag is set. This computation is done on a commit-by-commit basis. We will write these Bloom filters to the commit graph file in the next change.
--- commit-graph.c | 32 +++++++++++++++++++++++++++++++- commit-graph.h | 3 ++- 2 files changed, 33 insertions(+), 2 deletions(-)
commit-graph.c +31 -1
@@ -16,6 +16,7 @@#include "hashmap.h" #include "replace-object.h" #include "progress.h" +#include "bloom.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
@@ -795,9 +796,11 @@ struct write_commit_graph_context { unsigned append:1, report_progress:1, split:1, - check_oids:1; + check_oids:1, + changed_paths:1;const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_data_size; }; static void write_graph_chunk_fanout(struct hashfile *f,
@@ -1140,6 +1143,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{ +int i; +struct progress *progress =NULL ; + +load_bloom_filters (); + +if (ctx->report_progress) + progress =start_progress ( +_ ("Computing commit diff Bloom filters" ), + ctx->commits.nr); + +for (i =0 ; i < ctx->commits.nr; i++) { +struct commit *c = ctx->commits.list[i]; +struct bloom_filter *filter =get_bloom_filter (ctx->r, c); + ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len; +display_progress (progress, i +1 ); + } + +stop_progress (&progress); +} +static int add_ref_to_list (const char *refname,const struct object_id *oid,int flags,void *cb_data)
@@ -1794,6 +1819,8 @@ int write_commit_graph(const char *obj_dir, ctx->split = flags &COMMIT_GRAPH_WRITE_SPLIT ?1 :0 ; ctx->check_oids = flags &COMMIT_GRAPH_WRITE_CHECK_OIDS ?1 :0 ; ctx->split_opts = split_opts; + ctx->changed_paths = flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS ?1 :0 ; + ctx->total_bloom_filter_data_size =0 ;if (ctx->split) {struct commit_graph *g;
@@ -1888,6 +1915,9 @@ int write_commit_graph(const char *obj_dir,compute_generation_numbers (ctx); +if (ctx->changed_paths) +compute_bloom_filters (ctx); + res =write_commit_graph_file (ctx);if (ctx->split)
commit-graph.h +2 -1
@@ -76,7 +76,8 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_PROGRESS = (1 <<1 ),COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ -COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ) +COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), +COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 ) }; struct split_commit_graph_opts {
Signature · 1 line
gitgitgadget
Re: [PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths
Quoted 8 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Subject: [PATCH v2 04/11] commit-graph: compute Bloom filters for changed pathsCompute Bloom filters for the paths that changed between a commit and its first parent using the implementation in
bloom.c, when theCOMMIT_GRAPH_WRITE_CHANGED_PATHSflag is set. This computation is done on a commit-by-commit basis. We will write these Bloom filters to the commit graph file in the next change.
I have no major complaints about the contents of this patch (except lack of test, and type of total_bloom_filter_data_size), but the commit message could have been worded better.
I would write something like this instead:
Add new COMMIT_GRAPH_WRITE_CHANGED_PATHS flag that makes Git compute Bloom filters that store the information about changed paths (that changed between a commit and its first parent) for each commit in the commit-graph. This computation is done on a commit-by-commit basis.
We will write these Bloom filters to the commit-graph file, to store this data on disk, in the next change in this series.
In my opinion the fact that we compute Bloom filters for each and every commit in the commit-graph file is more important than quite obvious fact that we use implementation from bloom.c.
Quoted 7 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 32 +++++++++++++++++++++++++++++++- commit-graph.h | 3 ++- 2 files changed, 33 insertions(+), 2 deletions(-)
It would be good to have at least sanity check of this feature, perhaps one that would check that the number of per-commit Bloom filters on slab matches the number of commits in the commit-graph.
It could look something like this:
test_expect_success 'create Bloom filters for all commit-graph commits' ' # create commit-graph with 2 commits git rev-parse HEAD HEAD^ | git commit-graph write --stdin-commits && # generate Bloom filters for commit-graph commits cat >commands <<\-EOF && add-graph-commits filters-count EOF NUM_FILTERS=$(git test-tool bloom <commands) %% test "$NUM_FILTERS" -eq 2 '
Quoted 14 lines
commit-graph.c +1
-0@@ -16,6 +16,7 @@#include "hashmap.h" #include "replace-object.h" #include "progress.h" +#include "bloom.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
commit-graph.c struct write_commit_graph_context { · line 800
Quoted 6 lines
commit-graph.c +2
-1@@ -795,9 +796,11 @@ struct write_commit_graph_context { unsigned append:1, report_progress:1, split:1, - check_oids:1; + check_oids:1, + changed_paths:1;
All right, this flag will be used for handling future --changed-paths option to the git commit-graph write.
commit-graph.c struct write_commit_graph_context { · line 803
Quoted 3 lines
commit-graph.c +1
-0const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_data_size;
This is total size of Bloom filters data, in bytes, that will later be used for BDAT chunk size. However the commit-graph format uses 8 bytes for byte-offset, not 4 bytes. Why it is uint32_t and not uint64_t then?
Quoted 9 lines
commit-graph.c +2
-0}; static void write_graph_chunk_fanout(struct hashfile *f,@@ -1140,6 +1143,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{
commit-graph.c static void compute_generation_numbers(struct write_commit_graph_context *ctx) · line 1157
Quoted 10 lines
commit-graph.c +10
-0+int i; +struct progress *progress =NULL ; + +load_bloom_filters (); + +if (ctx->report_progress) + progress =start_progress ( +_ ("Computing commit diff Bloom filters" ), + ctx->commits.nr); +
Shouldn't we initialize ctx->total_bloom_filter_data_size to 0 here? We cannot use compute_bloom_filters() to _update_ Bloom filters data, I think -- we don't distinguish here between new and existing data (where existing data size is already included in total Bloom filters size). At least I don't think so.
commit-graph.c static void compute_generation_numbers(struct write_commit_graph_context *ctx) · line 1159
Quoted 2 lines
commit-graph.c +2
-0+for (i =0 ; i < ctx->commits.nr; i++) { +struct commit *c = ctx->commits.list[i];
Here we process commit in whatever order commits are in the commits.list, which probably means lexicographical order, in practice random order.
Quoted 22 lines
commit-graph.c +10
-0+struct bloom_filter *filter =get_bloom_filter (ctx->r, c); + ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len; +display_progress (progress, i +1 ); + } + +stop_progress (&progress); +} +static int add_ref_to_list (const char *refname,const struct object_id *oid,int flags,void *cb_data)@@ -1794,6 +1819,8 @@ int write_commit_graph(const char *obj_dir, ctx->split = flags &COMMIT_GRAPH_WRITE_SPLIT ?1 :0 ; ctx->check_oids = flags &COMMIT_GRAPH_WRITE_CHECK_OIDS ?1 :0 ; ctx->split_opts = split_opts; + ctx->changed_paths = flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS ?1 :0 ; + ctx->total_bloom_filter_data_size =0 ;if (ctx->split) {struct commit_graph *g;
commit-graph.c int write_commit_graph(const char *obj_dir, · line 1920
Quoted 6 lines
commit-graph.c +3
-0@@ -1888,6 +1915,9 @@ int write_commit_graph(const char *obj_dir,compute_generation_numbers (ctx); +if (ctx->changed_paths) +compute_bloom_filters (ctx); +
All right.
Quoted 8 lines
commit-graph.c +0
-0res =write_commit_graph_file (ctx);if (ctx->split)commit-graph.h +0
-0
commit-graph.h enum commit_graph_write_flags { · line 80
Quoted 6 lines
commit-graph.h +2
-1@@ -76,7 +76,8 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_PROGRESS = (1 <<1 ),COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ -COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ) +COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), +COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 )
All right.
Side note: perhaps we could add trailing comma after new enum entry, that is
+ COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4),
following new CodingGuidelines recommendation
- We try to support a wide range of C compilers to compile Git with, including old ones. You should not use features from newer C standard, even if your compiler groks them.
There are a few exceptions to this guideline:
. since early 2012 with e1327023ea, we have been using an enum
definition whose last element is followed by a comma. This, like an array initializer that ends with a trailing comma, can be used to reduce the patch noise when adding a new identifier at the end.
https://github.com/git/git/blob/master/Documentation/CodingGuidelines#L197
Quoted 3 lines
commit-graph.h +0
-0};struct split_commit_graph_opts {
Re: [PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths
Quoted 22 lines · Jakub Narebski
Quoted 8 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Subject: [PATCH v2 04/11] commit-graph: compute Bloom filters for changed pathsCompute Bloom filters for the paths that changed between a commit and its first parent using the implementation in
bloom.c, when theCOMMIT_GRAPH_WRITE_CHANGED_PATHSflag is set. This computation is done on a commit-by-commit basis. We will write these Bloom filters to the commit graph file in the next change.I have no major complaints about the contents of this patch (except lack of test, and type of
total_bloom_filter_data_size), but the commit message could have been worded better.I would write something like this instead:
Add new
COMMIT_GRAPH_WRITE_CHANGED_PATHSflag that makes Git compute Bloom filters that store the information about changed paths (that changed between a commit and its first parent) for each commit in the commit-graph. This computation is done on a commit-by-commit basis.
Quoted 7 lines
We will write these Bloom filters to the commit-graph file, to store this data on disk, in the next change in this series.
In my opinion the fact that we compute Bloom filters for each and every commit in the commit-graph file is more important than quite obvious fact that we use implementation from
bloom.c.
Nice! Incorporated in v3. Thanks!
Quoted 8 lines
Quoted 7 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 32 +++++++++++++++++++++++++++++++- commit-graph.h | 3 ++- 2 files changed, 33 insertions(+), 2 deletions(-)
Quoted 4 lines
It would be good to have at least sanity check of this feature, perhaps one that would check that the number of per-commit Bloom filters on slab matches the number of commits in the commit-graph.
The combination of all the e2e tests in this series with the test flag being turned on in the CI, and the performance gains we are seeing confirm that this is happening correctly.
Quoted 8 lines
commit-graph.c struct write_commit_graph_context { · line 803
Quoted 3 lines
commit-graph.c +1
-0const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_data_size;This is total size of Bloom filters data, in bytes, that will later be used for BDAT chunk size. However the commit-graph format uses 8 bytes for byte-offset, not 4 bytes. Why it is
uint32_tand notuint64_tthen?
Changed to size_t. Thanks for noticing!
Quoted 17 lines
Quoted 17 lines
};
static void write_graph_chunk_fanout(struct hashfile *f,
commit-graph.c +10
-0@@ -1140,6 +1143,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{ +int i; +struct progress *progress =NULL ; + +load_bloom_filters (); + +if (ctx->report_progress) + progress = start_progress( + _("Computing commit diff Bloom filters"),
Quoted 9 lines
Review static void compute_generation_numbers(struct write_commit_graph_context *ctx) · line 1157
Quoted 2 lines
(quoted diff) +2
-0+ ctx->commits.nr); +Shouldn't we initialize
ctx->total_bloom_filter_data_sizeto 0 here? We cannot usecompute_bloom_filters()to _update_ Bloom filters data, I think -- we don't distinguish here between new and existing data (where existing data size is already included in total Bloom filters size). At least I don't think so.
This line in commit-graph.c takes care of reinitializing the graph context and by consequence the bloom filter data size.
ctx = xcalloc(1, sizeof(struct write_commit_graph_context));
So the total size gets recalculated every time, which is correct.
Quoted 8 lines
Side note: perhaps we could add trailing comma after new enum entry, that is
+
COMMIT_GRAPH_WRITE_BLOOM_FILTERS= (1 << 4),following new CodingGuidelines recommendation
Thanks! Fixed in v3.
Cheers!
Garima Singh
Re: [PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths
Quoted 2 lines · Garima Singh
Quoted 1 line · Jakub Narebski
"Garima Singh via GitGitGadget" <[email protected]> writes:
[...]
Quoted 5 lines
Quoted 5 lines
Quoted 4 lines
--- commit-graph.c | 32 +++++++++++++++++++++++++++++++- commit-graph.h | 3 ++- 2 files changed, 33 insertions(+), 2 deletions(-)
Quoted 7 lines
Quoted 3 lines
It would be good to have at least sanity check of this feature, perhaps one that would check that the number of per-commit Bloom filters on slab matches the number of commits in the commit-graph.
The combination of all the e2e tests in this series with the test flag being turned on in the CI, and the performance gains we are seeing confirm that this is happening correctly.
Well, the advantage of unit tests over e2e functional tests is that they can pinpoint the source of bug much more easily.
That said, I don't think there is absolute need for unit tests here, though it would be nice to have them.
Quoted 9 lines
Quoted 7 lines
commit-graph.c struct write_commit_graph_context { · line 803
Quoted 3 lines
commit-graph.c +1
-0const struct split_commit_graph_opts *split_opts; +uint32_t total_bloom_filter_data_size;This is total size of Bloom filters data, in bytes, that will later be used for BDAT chunk size. However the commit-graph format uses 8 bytes for byte-offset, not 4 bytes. Why it is
uint32_tand notuint64_tthen?Changed to
size_t. Thanks for noticing!
Right, this is a local value (size_t may be different size on different architectures), even though it will be stored indirectly in chunk lookup table as pair of uint64_t offsets.
Quoted 27 lines
Quoted 17 lines
Quoted 17 lines
};
static void write_graph_chunk_fanout(struct hashfile *f,
commit-graph.c +10
-0@@ -1140,6 +1143,28 @@ static void compute_generation_numbers(struct write_commit_graph_context *ctx)stop_progress (&ctx->progress); } +static void compute_bloom_filters (struct write_commit_graph_context *ctx) +{ +int i; +struct progress *progress =NULL ; + +load_bloom_filters (); + +if (ctx->report_progress) + progress = start_progress( + _("Computing commit diff Bloom filters"),Quoted 9 lines
Review static void compute_generation_numbers(struct write_commit_graph_context *ctx) · line 1157
Quoted 2 lines
(quoted diff) +2
-0+ ctx->commits.nr); +Shouldn't we initialize
ctx->total_bloom_filter_data_sizeto 0 here? We cannot usecompute_bloom_filters()to _update_ Bloom filters data, I think -- we don't distinguish here between new and existing data (where existing data size is already included in total Bloom filters size). At least I don't think so.
Quoted 6 lines
This line in
commit-graph.ctakes care of reinitializing the graph context and by consequence the bloom filter data size.ctx = xcalloc(1, sizeof(struct write_commit_graph_context));So the total size gets recalculated every time, which is correct.
True, I have missed this.
Best,
Signature · 1 line
Jakub Narębski
PATCH v2 5/11 commit-graph: examine changed-path objects in pack order
In reply to Garima Singh via GitGitGadgetFrom: Jeff King <[email protected]>
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas (whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
Probably the "--reachable" code path would want something similar.
Or alternatively, we could use a different data structure (either a hash, or maybe even just a bit in "struct commit") to keep track of which oids we've seen, etc instead of sorting. And then we could keep the original order.
--- commit-graph.c | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-)
commit-graph.c +33 -1
@@ -17,6 +17,7 @@#include "replace-object.h" #include "progress.h" #include "bloom.h" +#include "commit-slab.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */
@@ -46,6 +47,29 @@/* Remember to update object flag allocation in object.h */ #define REACHABLE (1u<<15) +/* Keep track of the order in which commits are added to our list. */ +define_commit_slab (commit_pos, int); +static struct commit_pos commit_pos =COMMIT_SLAB_INIT (1 , commit_pos); + +static void set_commit_pos (struct repository *r,const struct object_id *oid) +{ +static int32_t max_pos; +struct commit *commit =lookup_commit (r, oid); + +if (!commit) +return ;/* should never happen, but be lenient */ + + *commit_pos_at (&commit_pos, commit) = max_pos++; +} + +static int commit_pos_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; +return commit_pos_at (&commit_pos, a) - +commit_pos_at (&commit_pos, b); +} +char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);
@@ -1027,6 +1051,8 @@ static int add_packed_commits(const struct object_id *oid,oidcpy (&(ctx->oids.list[ctx->oids.nr]), oid); ctx->oids.nr++; +set_commit_pos (ctx->r, oid); +return 0 ; }
@@ -1147,6 +1173,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx) {int i;struct progress *progress =NULL ; +struct commit **sorted_by_pos;load_bloom_filters ();
@@ -1155,13 +1182,18 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)_ ("Computing commit diff Bloom filters" ), ctx->commits.nr); +ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr); +COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +for (i =0 ; i < ctx->commits.nr; i++) { -struct commit *c = ctx->commits.list[i]; +struct commit *c = sorted_by_pos[i];struct bloom_filter *filter =get_bloom_filter (ctx->r, c); ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); } +free (sorted_by_pos);stop_progress (&progress); }
Signature · 1 line
gitgitgadget
Re: [PATCH v2 05/11] commit-graph: examine changed-path objects in pack order
Quoted 4 lines · Jeff King via GitGitGadget
From: Jeff King <[email protected]>
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas
Nitpick: should we still say sha1 order? Git is still using SHA-1 as an *oid*, but hopefully soon it will be transitioning to NewHash = SHA-256. (No need to change anything.)
Quoted 4 lines
(whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Actually, commit-graph code needs write_commit_graph_context.commits.list to be in lexicographical order to be able to turn position in graph into reference to a commit. The information about the parents of the commit are stored using positional references within the graph file.
Quoted 5 lines
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
Nitpick: with reordering of patches (which I think is otherwise a good thing) this patch actually comes before the one adding "--changed-paths" option to "git commit-graph write". So it 'This would drop my time' rather than 'This drops my time...' ;-)
Quoted 2 lines
Probably the "--reachable" code path would want something similar.
Has anyone tried doing this?
Quoted 5 lines
Or alternatively, we could use a different data structure (either a hash, or maybe even just a bit in "struct commit") to keep track of which oids we've seen, etc instead of sorting. And then we could keep the original order.
I think it is nice to keep those "what ifs?" thoughts in the commit message. They add some color.
Quoted 27 lines
Signed-off-by Jeff King <[email protected]>Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-)commit-graph.c +5
-0@@ -17,6 +17,7 @@#include "replace-object.h" #include "progress.h" #include "bloom.h" +#include "commit-slab.h" #define GRAPH_SIGNATURE 0x43475048/* "CGPH" */ #define GRAPH_CHUNKID_OIDFANOUT 0x4f494446/* "OIDF" */ @@ -46,6 +47,29 @@/* Remember to update object flag allocation in object.h */ #define REACHABLE (1u<<15) +/* Keep track of the order in which commits are added to our list. */ +define_commit_slab (commit_pos, int); +static struct commit_pos commit_pos =COMMIT_SLAB_INIT (1 , commit_pos); +
commit-graph.c line 63
Quoted 10 lines
commit-graph.c +10
-0+static void set_commit_pos (struct repository *r,const struct object_id *oid) +{ +static int32_t max_pos; +struct commit *commit =lookup_commit (r, oid); + +if (!commit) +return ;/* should never happen, but be lenient */ + + *commit_pos_at (&commit_pos, commit) = max_pos++; +}
All right, that is nice and universal function.
commit-graph.c line 71
Quoted 8 lines
commit-graph.c +8
-0+ +static int commit_pos_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; +return commit_pos_at (&commit_pos, a) - +commit_pos_at (&commit_pos, b); +}
Hmmm... I wonder what would happen in commit_pos was not set (like e.g. commit-graph commits not coming from the packfile). Let's look up the documenation...
commit_pos_at() returns a pointer to an int... why are we comparing pointers and not values? Shouldn't it be
+ return *commit_pos_at(&commit_pos, a) - + *commit_pos_at(&commit_pos, b);
With commit_pos_at() the location to store the data is allocated as necessary (if data for commit doesn't exists), and because we are using xalloc() the *commit_pos_at() is 0-initialized. This means that if commits didn't come from the packfile, we sort all commits as being equal. Luckily we fix that in next patch.
Quoted 14 lines
commit-graph.c +3
-0+char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);@@ -1027,6 +1051,8 @@ static int add_packed_commits(const struct object_id *oid,oidcpy (&(ctx->oids.list[ctx->oids.nr]), oid); ctx->oids.nr++; +set_commit_pos (ctx->r, oid); +return 0 ; }
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1176
Quoted 4 lines
commit-graph.c +1
-0@@ -1147,6 +1173,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx) {int i;struct progress *progress =NULL ; +struct commit **sorted_by_pos;
In the next patch in series we would sort commits by generation number and creation data; shouldn't this variable name be more generic to reflect this, for example just sorted_commits or commits_sorted?
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1188
Quoted 11 lines
commit-graph.c +4
-0load_bloom_filters ();@@ -1155,13 +1182,18 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)_ ("Computing commit diff Bloom filters" ), ctx->commits.nr); +ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr); +COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +
All right: allocate array, copy data, sort it.
We need to copy data because (what I think) we need commits in lexicographical order to be able to turn the position in graph that parents of a commit are stored as into the reference to this commit.
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1190
Quoted 3 lines
commit-graph.c +1
-1for (i =0 ; i < ctx->commits.nr; i++) { -struct commit *c = ctx->commits.list[i]; +struct commit *c = sorted_by_pos[i];
All right: use sorted data.
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1196
Quoted 6 lines
commit-graph.c +1
-0struct bloom_filter *filter =get_bloom_filter (ctx->r, c); ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); } +free (sorted_by_pos);
Can we free the slab data, i.e. call clear_commit_pos(&commit_pos); here? Otherwise we are leaking memory (well, except that finishing command makes the operating system to free memory for us).
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1198
Quoted 2 lines
commit-graph.c +0
-0stop_progress (&progress); }
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 05/11] commit-graph: examine changed-path objects in pack order
Quoted 16 lines · Jakub Narebski
Quoted 4 lines · Jeff King via GitGitGadget
From: Jeff King <[email protected]>
Looking at the diff of commit objects in pack order is much faster than in sha1 order, as it gives locality to the access of tree deltas
Nitpick: should we still say sha1 order? Git is still using SHA-1 as an *oid*, but hopefully soon it will be transitioning to NewHash = SHA-256. (No need to change anything.)
Quoted 4 lines
(whereas sha1 order is effectively random). Unfortunately the commit-graph code sorts the commits (several times, sometimes as an oid and sometimes a pointer-to-commit), and we ultimately traverse in sha1 order.
Quoted 5 lines
Actually, commit-graph code needs write_commit_graph_context.commits.list to be in lexicographical order to be able to turn position in graph into reference to a commit. The information about the parents of the commit are stored using positional references within the graph file.
You are right. Fixing the commit message in v3.
Quoted 11 lines
Quoted 5 lines
Instead, let's remember the position at which we see each commit, and traverse in that order when looking at bloom filters. This drops my time for "git commit-graph write --changed-paths" in linux.git from ~4 minutes to ~1.5 minutes.
Nitpick: with reordering of patches (which I think is otherwise a good thing) this patch actually comes before the one adding "--changed-paths" option to "git commit-graph write". So it 'This would drop my time' rather than 'This drops my time...' ;-)
:) I will fix that up.
Quoted 5 lines
Quoted 2 lines
Probably the "--reachable" code path would want something similar.
Has anyone tried doing this?
I will and I will include the perf numbers in the appropriately in v3.
Quoted 13 lines
Quoted 13 lines
commit-graph.c +3
-0+char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);@@ -1027,6 +1051,8 @@ static int add_packed_commits(const struct object_id *oid,oidcpy (&(ctx->oids.list[ctx->oids.nr]), oid); ctx->oids.nr++; +set_commit_pos (ctx->r, oid); +return 0 ; }
Quoted 10 lines
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1176
Quoted 5 lines
commit-graph.c +1
-0@@ -1147,6 +1173,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx) {int i;struct progress *progress =NULL ; +struct commit **sorted_by_pos;In the next patch in series we would sort commits by generation number and creation data; shouldn't this variable name be more generic to reflect this, for example just
sorted_commitsorcommits_sorted?
Good call. I will clean this up in both commits.
Thanks for the review!
Cheers!
Garima Singh
PATCH v2 6/11 commit-graph: examine commits by generation number
In reply to Garima Singh via GitGitGadgetFrom: Derrick Stolee <[email protected]>
When running 'git commit-graph write --changed-paths', we sort the commits by pack-order to save time when computing the changed-paths bloom filters. This does not help when finding the commits via the --reachable flag.
If not using pack-order, then sort by generation number before examining the diff. Commits with similar generation are more likely to have many trees in common, making the diff faster.
On the Linux kernel repository, this change reduced the computation time for 'git commit-graph write --reachable --changed-paths' from 3m00s to 1m37s.
--- commit-graph.c | 33 ++++++++++++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-)
commit-graph.c +30 -3
@@ -70,6 +70,25 @@ static int commit_pos_cmp(const void *va, const void *vb)commit_pos_at (&commit_pos, b); } +static int commit_gen_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; + +/* lower generation commits first */ +if (a->generation < b->generation) +return -1 ; +else if (a->generation > b->generation) +return 1 ; + +/* use date as a heuristic when generations are equal */ +if (a->date < b->date) +return -1 ; +else if (a->date > b->date) +return 1 ; +return 0 ; +} +char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);
@@ -821,7 +840,8 @@ struct write_commit_graph_context { report_progress:1, split:1, check_oids:1, - changed_paths:1; + changed_paths:1, + order_by_pack:1;const struct split_commit_graph_opts *split_opts;uint32_t total_bloom_filter_data_size;
@@ -1184,7 +1204,11 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr);COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); -QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); + +if (ctx->order_by_pack) +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +else +QSORT (sorted_by_pos, ctx->commits.nr, commit_gen_cmp);for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i];
@@ -1902,6 +1926,7 @@ int write_commit_graph(const char *obj_dir, }if (pack_indexes) { + ctx->order_by_pack =1 ;if ((res =fill_oids_from_packs (ctx, pack_indexes))) goto cleanup; }
@@ -1911,8 +1936,10 @@ int write_commit_graph(const char *obj_dir, goto cleanup; } -if (!pack_indexes && !commit_hex) +if (!pack_indexes && !commit_hex) { + ctx->order_by_pack =1 ;fill_oids_from_all_packs (ctx); + }close_reachable (ctx);
Signature · 1 line
gitgitgadget
Re: [PATCH v2 06/11] commit-graph: examine commits by generation number
Quoted 6 lines · Derrick Stolee via GitGitGadget
From: Derrick Stolee <[email protected]>
When running 'git commit-graph write --changed-paths', we sort the commits by pack-order to save time when computing the changed-paths bloom filters. This does not help when finding the commits via the --reachable flag.
Minor improvement suggestion: s/--reachable flag/'--reachable' flag/.
Quoted 3 lines
If not using pack-order, then sort by generation number before examining the diff.
All right, that is good description of what the patch does.
Quoted 2 lines
Commits with similar generation are more likely
to have many trees in common, making the diff faster.
Is this what causes the performance improvement, that subsequently examined commits are more likely to have more trees in common, which means that those trees would be hot in cache, making generating diff faster? Is it what profiling shows?
Quoted 4 lines
On the Linux kernel repository, this change reduced the computation time for 'git commit-graph write --reachable --changed-paths' from 3m00s to 1m37s.
Would using the trick used for packfiles also for '--reachable', which would mean commits examined in recency / reachability order, give similar, worse or better performance improvements?
We would want this sorting order as one of possibilities anyway, because '--stdin-commits' we could get commits in random order.
Quoted 13 lines
Helped-by Jeff King <[email protected]>Signed-off-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 33 ++++++++++++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-)commit-graph.c +0
-0
commit-graph.c static int commit_pos_cmp(const void *va, const void *vb) · line 78
Quoted 9 lines
commit-graph.c +6
-0@@ -70,6 +70,25 @@ static int commit_pos_cmp(const void *va, const void *vb)commit_pos_at (&commit_pos, b); } +static int commit_gen_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; + +/* lower generation commits first */
Shouldn't higher generation commits come first, in recency-like order? Or it doesn't matter if it is sorted in ascending or descending order, as long as commits with close generation numbers are examined close together?
commit-graph.c static int commit_pos_cmp(const void *va, const void *vb) · line 90
Quoted 12 lines
commit-graph.c +12
-0+if (a->generation < b->generation) +return -1 ; +else if (a->generation > b->generation) +return 1 ; + +/* use date as a heuristic when generations are equal */ +if (a->date < b->date) +return -1 ; +else if (a->date > b->date) +return 1 ; +return 0 ; +}
I thought we have had such comparison function defined somewhere in Git already, but I think I'm wrong here.
Quoted 15 lines
commit-graph.c +3
-1+char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);@@ -821,7 +840,8 @@ struct write_commit_graph_context { report_progress:1, split:1, check_oids:1, - changed_paths:1; + changed_paths:1, + order_by_pack:1;const struct split_commit_graph_opts *split_opts;uint32_t total_bloom_filter_data_size;
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1211
Quoted 9 lines
commit-graph.c +5
-1@@ -1184,7 +1204,11 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr);COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); -QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); + +if (ctx->order_by_pack) +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +else +QSORT (sorted_by_pos, ctx->commits.nr, commit_gen_cmp);
Here 'sorted_b_pos' variable name no longer reflects reality... (see comment to the previous patch in the series).
Quoted 12 lines
commit-graph.c +1
-0for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i];@@ -1902,6 +1926,7 @@ int write_commit_graph(const char *obj_dir, }if (pack_indexes) { + ctx->order_by_pack =1 ;if ((res =fill_oids_from_packs (ctx, pack_indexes))) goto cleanup; }
commit-graph.c int write_commit_graph(const char *obj_dir, · line 1944
Quoted 10 lines
commit-graph.c +3
-1@@ -1911,8 +1936,10 @@ int write_commit_graph(const char *obj_dir, goto cleanup; } -if (!pack_indexes && !commit_hex) +if (!pack_indexes && !commit_hex) { + ctx->order_by_pack =1 ;fill_oids_from_all_packs (ctx); + }close_reachable (ctx);
All right, that covers all cases where 'git commit-graph write' writes serialized commit-graph based on the commits found in packfiles:
'--stdin-packs' and default no option case, in that order.
Looks good.
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 06/11] commit-graph: examine commits by generation number
Quoted 11 lines · Jakub Narebski
Quoted 6 lines · Derrick Stolee via GitGitGadget
From: Derrick Stolee <[email protected]>
When running 'git commit-graph write --changed-paths', we sort the commits by pack-order to save time when computing the changed-paths bloom filters. This does not help when finding the commits via the --reachable flag.
Minor improvement suggestion: s/--reachable flag/'--reachable' flag/.
Sure.
Quoted 8 lines
Quoted 2 lines
Commits with similar generation are more likely
to have many trees in common, making the diff faster.Is this what causes the performance improvement, that subsequently examined commits are more likely to have more trees in common, which means that those trees would be hot in cache, making generating diff faster? Is it what profiling shows?
Yes.
Quoted 16 lines
Quoted 16 lines
Helped-by Jeff King <[email protected]>Signed-off-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- commit-graph.c | 33 ++++++++++++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-)commit-graph.c +0
-0@@ -70,6 +70,25 @@ static int commit_pos_cmp(const void *va, const void *vb)commit_pos_at (&commit_pos, b); }
Quoted 12 lines
commit-graph.c static int commit_pos_cmp(const void *va, const void *vb) · line 78
Quoted 6 lines
commit-graph.c +6
-0+static int commit_gen_cmp (const void *va,const void *vb) +{ +const struct commit *a = *(const struct commit **)va; +const struct commit *b = *(const struct commit **)vb; + +/* lower generation commits first */ Shouldn't higher generation commits come first, in recency-like order? Or it doesn't matter if it is sorted in ascending or descending order, as long as commits with close generation numbers are examined close together?
The direction does not matter. Locality is important.
Quoted 7 lines
Quoted 7 lines
commit-graph.c +7
-0+if (a->generation < b->generation) +return -1 ; +else if (a->generation > b->generation) +return 1 ; + +/* use date as a heuristic when generations are equal */ +if (a->date < b->date)
Quoted 9 lines
commit-graph.c static int commit_pos_cmp(const void *va, const void *vb) · line 90
Quoted 5 lines
commit-graph.c +5
-0+return -1 ; + else if (a->date > b->date) + return 1; +return 0 ; +}I thought we have had such comparison function defined somewhere in Git already, but I think I'm wrong here.
It actually exists in commit.h
I will just use it here.
Thanks for pointing it out!
Quoted 16 lines
Quoted 16 lines
commit-graph.c +3
-1+char *get_commit_graph_filename (const char *obj_dir) {char *filename =xstrfmt ("%s/info/commit-graph" , obj_dir);@@ -821,7 +840,8 @@ struct write_commit_graph_context { report_progress:1, split:1, check_oids:1, - changed_paths:1; + changed_paths:1, + order_by_pack:1;const struct split_commit_graph_opts *split_opts;uint32_t total_bloom_filter_data_size;@@ -1184,7 +1204,11 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)
Quoted 12 lines
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1211
Quoted 8 lines
commit-graph.c +5
-1ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr);COPY_ARRAY (sorted_by_pos, ctx->commits.list, ctx->commits.nr); -QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); + +if (ctx->order_by_pack) +QSORT (sorted_by_pos, ctx->commits.nr, commit_pos_cmp); +else +QSORT (sorted_by_pos, ctx->commits.nr, commit_gen_cmp);Here '
sorted_b_pos' variable name no longer reflects reality... (see comment to the previous patch in the series).
Yup. Fixing.
Thanks!
Garima Singh
PATCH v2 7/11 commit-graph: write Bloom filters to commit graph file
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Update the technical documentation for commit-graph-format with the formats for the Bloom filter index (BIDX) and Bloom filter data (BDAT) chunks. Write the computed Bloom filters information to the commit graph file using this format.
--- .../technical/commit-graph-format.txt | 24 ++++ commit-graph.c | 118 +++++++++++++++++- commit-graph.h | 7 +- 3 files changed, 145 insertions(+), 4 deletions(-)
Documentation/technical/commit-graph-format.txt +24 -0
@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file. +- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent. + These positional references are stored as unsigned 32-bit integers corresponding to the array position within the list of commit OIDs. Due to some special constants we use to track parents, we can store at most
@@ -93,6 +96,27 @@ CHUNK DATA: positions for the parents until reaching a value with the most-significant bit on. The other bits correspond to the position of the last parent. + Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) (N * 4 bytes) [Optional] + * The ith entry, BIDX[i], stores the number of 8-byte word blocks in all + Bloom filters from commit 0 to commit i (inclusive) in lexicographic + order. The Bloom filter for the i-th commit spans from BIDX[i-1] to + BIDX[i] (plus header length), where BIDX[-1] is 0. + * The BIDX chunk is ignored if the BDAT chunk is not present. + + Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional] + * It starts with header consisting of three unsigned 32-bit integers: + - Version of the hash algorithm being used. We currently only support + value 1 which implies the murmur3 hash implemented exactly as described + in https://en.wikipedia.org/wiki/MurmurHash#Algorithm + - The number of times a path is hashed and hence the number of bit positions + that cumulatively determine whether a file is present in the commit. + - The minimum number of bits 'b' per entry in the Bloom filter. If the filter + contains 'n' entries, then the filter size is the minimum number of 64-bit + words that contain n*b bits. + * The rest of the chunk is the concatenation of all the computed Bloom + filters for the commits in lexicographic order. + * The BDAT chunk is present iff BIDX is present. + Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional] This list of H-byte hashes describe a set of B commit-graph files that form a commit-graph chain. The graph position for the ith commit in this
commit-graph.c +115 -3
173 lines not on this page · raw message
commit-graph.h +6 -1
@@ -10,6 +10,7 @@#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"struct commit ; +struct bloom_filter_settings ;char *get_commit_graph_filename (const char *obj_dir);int open_commit_graph (const char *graph_file,int *fd,struct stat *st);
@@ -58,6 +59,10 @@ struct commit_graph {const unsigned char *chunk_commit_data;const unsigned char *chunk_extra_edges;const unsigned char *chunk_base_graphs; +const unsigned char *chunk_bloom_indexes; +const unsigned char *chunk_bloom_data; + +struct bloom_filter_settings *bloom_filter_settings; };struct commit_graph *load_commit_graph_one_fd_st (int fd,struct stat *st);
@@ -77,7 +82,7 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), -COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 ) + COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4), }; struct split_commit_graph_opts {
Signature · 1 line
gitgitgadget
Re: [PATCH v2 07/11] commit-graph: write Bloom filters to commit graph file
Quoted 5 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Update the technical documentation for commit-graph-format with the formats for the Bloom filter index (BIDX) and Bloom filter data (BDAT) chunks. Write the computed Bloom filters information to the commit graph file using this format.
Nice description.
The only minor nitpick is with the formating: it is 80-character wide, which is a bit wide.
Quoted 14 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- .../technical/commit-graph-format.txt | 24 ++++ commit-graph.c | 118 +++++++++++++++++- commit-graph.h | 7 +- 3 files changed, 145 insertions(+), 4 deletions(-)Documentation/technical/commit-graph-format.txt +0
-0
Documentation/technical/commit-graph-format.txt metadata, including: · line 22
Quoted 6 lines
Documentation/technical/commit-graph-format.txt +3
-0@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file. +- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent. +
All right.
Should we also state that it is optional (meta)data? This would be first optional piece of data stored in commit-graph, I think.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 104
Quoted 13 lines
Documentation/technical/commit-graph-format.txt +6
-0These positional references are stored as unsigned 32-bit integers corresponding to the array position within the list of commit OIDs. Due to some special constants we use to track parents, we can store at most@@ -93,6 +96,27 @@ CHUNK DATA: positions for the parents until reaching a value with the most-significant bit on. The other bits correspond to the position of the last parent. + Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) (N * 4 bytes) [Optional] + * The ith entry, BIDX[i], stores the number of 8-byte word blocks in all + Bloom filters from commit 0 to commit i (inclusive) in lexicographic + order. The Bloom filter for the i-th commit spans from BIDX[i-1] to + BIDX[i] (plus header length), where BIDX[-1] is 0. + * The BIDX chunk is ignored if the BDAT chunk is not present.
All right. Looks good.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 110
Quoted 6 lines
Documentation/technical/commit-graph-format.txt +6
-0+ + Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional] + * It starts with header consisting of three unsigned 32-bit integers: + - Version of the hash algorithm being used. We currently only support + value 1 which implies the murmur3 hash implemented exactly as described + in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
First a minor issue: shouldn't this nested unordered list be indented with a hanging indent formatted with spaces? That is be formatted like the following:
+ Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
+ * It starts with header consisting of three unsigned 32-bit integers:
+ - Version of the hash algorithm being used. We currently only support
+ value 1 which implies the murmur3 hash implemented exactly as
+ described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
But the existing formatting with spaces and tabs might be fine as it is, that is it renders as nested list with Asciidoc; it only looks a bit weird as patch, not so as text.
Second, and more important: it is in my opinion not enough information, at least if we are assuming that the information in this document should be enough for clean-room reimplementation of Bloom filter functionality (for example by JGit). To generate compatible Bloom filters, one needs also the information on how to create $k$ functionally-independent hash functions out of murmur3 hash. We do it currently using double hashing technique; if that changes then the exact set of bits in the Bloom filter would also change.
The additional description could look something like the following:
+ * It starts with header consisting of three unsigned 32-bit integers:
+ - Version of the hash algorithm being used. We currently only support
+ value 1 which implies the murmur3_32 hash implemented exactly as + described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm + and double hashing technique with 0x293ae76f and 0x7e646e2c seeds + as described in https://doi.org/10.1007/978-3-540-30494-4_26 + "Bloom Filters in Probabilistic Verification"
Also, it should be explicitly noted that we use murmur3_32, because there is also 128-bit version of murmur3 hash.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 112
Quoted 2 lines
Documentation/technical/commit-graph-format.txt +2
-0+ - The number of times a path is hashed and hence the number of bit positions + that cumulatively determine whether a file is present in the commit.
All right, in the original Bloom filter it was the number of different hash functions. With the double hashing technique, it is the number of times a path is hashed.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 115
Quoted 3 lines
Documentation/technical/commit-graph-format.txt +3
-0+ - The minimum number of bits 'b' per entry in the Bloom filter. If the filter + contains 'n' entries, then the filter size is the minimum number of 64-bit + words that contain n*b bits.
All right, that means empty Bloom filter, representing "no changes", with 'n' equal 0 entries, is represented as size 0 filter. That is, if we read this rule exactly as written.
Should we add the information that size 0 / length 0 filter is considered "no data" case? Or should we leave it to implementation?
There are two corner cases:
- "no changes" case, where all queries are answered with "no" can be represented as filter of size 0, or as Bloom filter with all bits set to 0
- "no data" case (used when there are more than 512 changed files) where all queries are answered with "maybe", currently represented as filter of size 0; can also be represented as Bloom filter with all bits set to 1
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 117
Quoted 2 lines
Documentation/technical/commit-graph-format.txt +2
-0+ * The rest of the chunk is the concatenation of all the computed Bloom + filters for the commits in lexicographic order.
All right.
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 118
Quoted 1 line
Documentation/technical/commit-graph-format.txt +1
-0+ * The BDAT chunk is present iff BIDX is present.
Perhaps we should spell 'iff' in full, that is 'if and only if'?
Quoted 33 lines
Documentation/technical/commit-graph-format.txt +1
-0+ Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional] This list of H-byte hashes describe a set of B commit-graph files that form a commit-graph chain. The graph position for the ith commit in thiscommit-graph.c +12
-1@@ -24,8 +24,10 @@#define GRAPH_CHUNKID_OIDLOOKUP 0x4f49444c/* "OIDL" */ #define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ +#define GRAPH_CHUNKID_BLOOMINDEXES 0x42494458/* "BIDX" */ +#define GRAPH_CHUNKID_BLOOMDATA 0x42444154/* "BDAT" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ -#define MAX_NUM_CHUNKS 5 +#define MAX_NUM_CHUNKS 7#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)@@ -325,6 +327,32 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, chunk_repeated =1 ; else graph->chunk_base_graphs = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMINDEXES : +if (graph->chunk_bloom_indexes) + chunk_repeated =1 ; +else + graph->chunk_bloom_indexes = data + chunk_offset; +break ; +
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 348
Quoted 10 lines
commit-graph.c +10
-0+case GRAPH_CHUNKID_BLOOMDATA : +if (graph->chunk_bloom_data) + chunk_repeated =1 ; +else { +uint32_t hash_version; + graph->chunk_bloom_data = data + chunk_offset; + hash_version =get_be32 (data + chunk_offset); + +if (hash_version !=1 ) +break ;
Shouldn't we mark Bloom filter as not to be used? Or is it left for later commit?
In the future it might be good idea to notify the user (perhaps protected with some advice.* option) that there is problem with Bloom filter data, namely that we have encountered unsupported hash version.
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 350
Quoted 2 lines
commit-graph.c +2
-0+ + graph->bloom_filter_settings =xmalloc (sizeof (struct bloom_filter_settings ));
Why is this structure allocated dynamically? We are leaking admittedly a small amount of memory because we never free this xmalloc() result.
If we need this field being a pointer to struct to have NULL mean no supported Bloom filter data, we could have instead use chunk_bloom_* fields instead - we can set at least one of them to NULL.
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 353
Quoted 3 lines
commit-graph.c +3
-0+ graph->bloom_filter_settings->hash_version = hash_version; + graph->bloom_filter_settings->num_hashes =get_be32 (data + chunk_offset +4 ); + graph->bloom_filter_settings->bits_per_entry =get_be32 (data + chunk_offset +8 );
All right; these 4 and 8 are sizeof(uint32_t) and 2*sizeof(uint32_t), respectively.
Quoted 9 lines
commit-graph.c +2
-0+ } +break ; }if (chunk_repeated) {@@ -343,6 +371,17 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, last_chunk_offset = chunk_offset; }
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 383
Quoted 10 lines
commit-graph.c +10
-0+/* We need both the bloom chunks to exist together. Else ignore the data */ +if ((graph->chunk_bloom_indexes && !graph->chunk_bloom_data) + || (!graph->chunk_bloom_indexes && graph->chunk_bloom_data)) { + graph->chunk_bloom_indexes =NULL ; + graph->chunk_bloom_data =NULL ; + graph->bloom_filter_settings =NULL ; + } + +if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) +load_bloom_filters ();
Wouldn't it be simpler to rely on the fact that both Bloom chunks must exists for it to matter, and write it like this:
+ if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
+ load_bloom_filters();
+ } else {
+ graph->chunk_bloom_indexes = NULL;
+ graph->chunk_bloom_data = NULL;
+ graph->bloom_filter_settings = NULL;
+ }Quoted 22 lines
commit-graph.c +15
-0+hashcpy (graph->oid.hash, graph->data + graph->data_len - graph->hash_len);if (verify_commit_graph_lite (graph)) {@@ -1040,6 +1079,59 @@ static void write_graph_chunk_extra_edges(struct hashfile *f, } } +static void write_graph_chunk_bloom_indexes (struct hashfile *f, +struct write_commit_graph_context *ctx) +{ +struct commit **list = ctx->commits.list; +struct commit **last = ctx->commits.list + ctx->commits.nr; +uint32_t cur_pos =0 ; +struct progress *progress =NULL ; +int i =0 ; + +if (ctx->report_progress) + progress =start_delayed_progress ( +_ ("Writing changed paths Bloom filters index" ), + ctx->commits.nr); +
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1105
Quoted 10 lines
commit-graph.c +10
-0+while (list < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); + cur_pos += filter->len; +display_progress (progress, ++i); +hashwrite_be32 (f, cur_pos); + list++; + } + +stop_progress (&progress); +}
All right, looks good.
Quoted 18 lines
commit-graph.c +18
-0+ +static void write_graph_chunk_bloom_data (struct hashfile *f, +struct write_commit_graph_context *ctx, +struct bloom_filter_settings *settings) +{ +struct commit **list = ctx->commits.list; +struct commit **last = ctx->commits.list + ctx->commits.nr; +struct progress *progress =NULL ; +int i =0 ; + +if (ctx->report_progress) + progress =start_delayed_progress ( +_ ("Writing changed paths Bloom filters data" ), + ctx->commits.nr); + +hashwrite_be32 (f, settings->hash_version); +hashwrite_be32 (f, settings->num_hashes); +hashwrite_be32 (f, settings->bits_per_entry);
commit-graph.c static void write_graph_chunk_extra_edges(struct hashfile *f, · line 1133
Quoted 10 lines
commit-graph.c +10
-0+ +while (list < last) { +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +display_progress (progress, ++i); +hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); + list++; + } + +stop_progress (&progress); +}
All right, looks good.
Side note: why have while loop here instead of for loop, like in previous patches? I'm not saying this is a bad idea (especially with same names for same variables).
Quoted 5 lines
commit-graph.c +1
-0+static int oid_compare (const void *_a,const void *_b) {const struct object_id *a = (const struct object_id *)_a;
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1296
Quoted 9 lines
commit-graph.c +2
-2@@ -1198,8 +1290,8 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)load_bloom_filters ();if (ctx->report_progress) - progress =start_progress ( -_ ("Computing commit diff Bloom filters" ), + progress =start_delayed_progress ( +_ ("Computing changed paths Bloom filters" ), ctx->commits.nr);
Ooops. This look like a fixup which should be made to the original earlier commit instead, isn't it?
Quoted 10 lines
commit-graph.c +1
-0ALLOC_ARRAY (sorted_by_pos, ctx->commits.nr);@@ -1444,6 +1536,7 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)struct strbuf progress_title =STRBUF_INIT ;int num_chunks =3 ;struct object_id file_hash; +struct bloom_filter_settings bloom_settings =DEFAULT_BLOOM_FILTER_SETTINGS ;if (ctx->split) {struct strbuf tmp_file =STRBUF_INIT ;
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1589
Quoted 9 lines
commit-graph.c +6
-0@@ -1488,6 +1581,12 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx) chunk_ids[num_chunks] =GRAPH_CHUNKID_EXTRAEDGES ; num_chunks++; } +if (ctx->changed_paths) { + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMINDEXES ; + num_chunks++; + chunk_ids[num_chunks] =GRAPH_CHUNKID_BLOOMDATA ; + num_chunks++; + }
All right, adding chunks and counting them.
Quoted 6 lines
commit-graph.c +0
-0if (ctx->num_commit_graphs_after >1 ) { chunk_ids[num_chunks] =GRAPH_CHUNKID_BASE ; num_chunks++;@@ -1506,6 +1605,15 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)4 * ctx->num_extra_edges; num_chunks++;
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1616
Quoted 10 lines
commit-graph.c +9
-0} +if (ctx->changed_paths) { + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] + +sizeof (uint32_t ) * ctx->commits.nr; + num_chunks++; + + chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] + +sizeof (uint32_t ) *3 + ctx->total_bloom_filter_data_size; + num_chunks++; + }
All right, calculating chunk offsets.
commit-graph.c static int write_commit_graph_file(struct write_commit_graph_context *ctx) · line 1657
Quoted 11 lines
commit-graph.c +4
-0if (ctx->num_commit_graphs_after >1 ) { chunk_offsets[num_chunks +1 ] = chunk_offsets[num_chunks] + hashsz * (ctx->num_commit_graphs_after -1 );@@ -1543,6 +1651,10 @@ static int write_commit_graph_file(struct write_commit_graph_context *ctx)write_graph_chunk_data (f, hashsz, ctx);if (ctx->num_extra_edges)write_graph_chunk_extra_edges (f, ctx); +if (ctx->changed_paths) { +write_graph_chunk_bloom_indexes (f, ctx); +write_graph_chunk_bloom_data (f, ctx, &bloom_settings); + }
All right, writing BIDX and BDAT chunks with default settings.
By the way, in the future, when appending to existing commit-graph file, shouldn't we re-use existing settings even if they are different from default settings? But that is question for the future...
Quoted 16 lines
commit-graph.c +0
-0if (ctx->num_commit_graphs_after >1 &&write_graph_chunk_base (f, ctx)) {return -1 ;commit-graph.h +1
-0@@ -10,6 +10,7 @@#define GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD "GIT_TEST_COMMIT_GRAPH_DIE_ON_LOAD"struct commit ; +struct bloom_filter_settings ;char *get_commit_graph_filename (const char *obj_dir);int open_commit_graph (const char *graph_file,int *fd,struct stat *st);
commit-graph.h struct commit_graph { · line 63
Quoted 5 lines
commit-graph.h +2
-0@@ -58,6 +59,10 @@ struct commit_graph {const unsigned char *chunk_commit_data;const unsigned char *chunk_extra_edges;const unsigned char *chunk_base_graphs; +const unsigned char *chunk_bloom_indexes; +const unsigned char *chunk_bloom_data;
All right.
commit-graph.h struct commit_graph { · line 65
Quoted 2 lines
commit-graph.h +2
-0+ +struct bloom_filter_settings *bloom_filter_settings;
Why it is pointer to struct, instead of being just struct type? Is there reason for that?
commit-graph.h enum commit_graph_write_flags { · line 85
Quoted 9 lines
commit-graph.h +1
-1};struct commit_graph *load_commit_graph_one_fd_st (int fd,struct stat *st);@@ -77,7 +82,7 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), -COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 ) + COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4),
This looks like accidental change; if we want to use trailing comma in enum, this change should be in my opinion done in the commit that added COMMIT_GRAPH_WRITE_BLOOM_FILTERS (as I have written in a comment there).
commit-graph.h enum commit_graph_write_flags { · line 88
Quoted 3 lines
commit-graph.h +0
-0};struct split_commit_graph_opts {
Thank you for your work on this series.
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 07/11] commit-graph: write Bloom filters to commit graph file
Quoted 4 lines · Jakub Narebski
Quoted 2 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Quoted 9 lines
Quoted 3 lines
Update the technical documentation for commit-graph-format with the formats for the Bloom filter index (BIDX) and Bloom filter data (BDAT) chunks. Write the computed Bloom filters information to the commit graph file using this format.
Nice description.
The only minor nitpick is with the formating: it is 80-character wide, which is a bit wide.
Fixed in v3. Thanks!
Quoted 17 lines
Quoted 17 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- .../technical/commit-graph-format.txt | 24 ++++ commit-graph.c | 118 +++++++++++++++++- commit-graph.h | 7 +- 3 files changed, 145 insertions(+), 4 deletions(-)Documentation/technical/commit-graph-format.txt +0
-0@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file.
Quoted 9 lines
Documentation/technical/commit-graph-format.txt metadata, including: · line 22
Quoted 3 lines
Documentation/technical/commit-graph-format.txt +3
-0+- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent. +All right.
Should we also state that it is optional (meta)data? This would be first optional piece of data stored in commit-graph, I think.
However the entire commit graph file is non critical metadata since git commands work just fine without it, just slower. The same applies to the changed path bloom filters.
Based on the definition of optional you are suggesting, edge data is optional because not every commit-graph has octopus merges.
Quoted 34 lines
Documentation/technical/commit-graph-format.txt CHUNK DATA: · line 110
Quoted 6 lines
Documentation/technical/commit-graph-format.txt +6
-0+ + Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional] + * It starts with header consisting of three unsigned 32-bit integers: + - Version of the hash algorithm being used. We currently only support + value 1 which implies the murmur3 hash implemented exactly as described + in https://en.wikipedia.org/wiki/MurmurHash#AlgorithmFirst a minor issue: shouldn't this nested unordered list be indented with a hanging indent formatted with spaces? That is be formatted like the following:
+ Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
+ * It starts with header consisting of three unsigned 32-bit integers:
+ - Version of the hash algorithm being used. We currently only support
+ value 1 which implies the murmur3 hash implemented exactly as
+ described in https://en.wikipedia.org/wiki/MurmurHash#AlgorithmBut the existing formatting with spaces and tabs might be fine as it is, that is it renders as nested list with Asciidoc; it only looks a bit weird as patch, not so as text.
Second, and more important: it is in my opinion not enough information, at least if we are assuming that the information in this document should be enough for clean-room reimplementation of Bloom filter functionality (for example by JGit). To generate compatible Bloom filters, one needs also the information on how to create $k$ functionally-independent hash functions out of murmur3 hash. We do it currently using double hashing technique; if that changes then the exact set of bits in the Bloom filter would also change.
The additional description could look something like the following:
+ * It starts with header consisting of three unsigned 32-bit integers:
+ - Version of the hash algorithm being used. We currently only support
Quoted 9 lines
+ value 1 which implies the murmur3_32 hash implemented exactly as + described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm + and double hashing technique with 0x293ae76f and 0x7e646e2c seeds + as described in https://doi.org/10.1007/978-3-540-30494-4_26 + "Bloom Filters in Probabilistic Verification"Also, it should be explicitly noted that we use
murmur3_32, because there is also 128-bit version of murmur3 hash.
I will incorporate this in. Thanks!
Quoted 4 lines
Quoted 1 line
+ * The BDAT chunk is present iff BIDX is present.
Perhaps we should spell 'iff' in full, that is 'if and only if'?
Sure.
Quoted 38 lines
Quoted 38 lines
Documentation/technical/commit-graph-format.txt +1
-0+ Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional] This list of H-byte hashes describe a set of B commit-graph files that form a commit-graph chain. The graph position for the ith commit in thiscommit-graph.c +17
-1@@ -24,8 +24,10 @@#define GRAPH_CHUNKID_OIDLOOKUP 0x4f49444c/* "OIDL" */ #define GRAPH_CHUNKID_DATA 0x43444154/* "CDAT" */ #define GRAPH_CHUNKID_EXTRAEDGES 0x45444745/* "EDGE" */ +#define GRAPH_CHUNKID_BLOOMINDEXES 0x42494458/* "BIDX" */ +#define GRAPH_CHUNKID_BLOOMDATA 0x42444154/* "BDAT" */ #define GRAPH_CHUNKID_BASE 0x42415345/* "BASE" */ -#define MAX_NUM_CHUNKS 5 +#define MAX_NUM_CHUNKS 7#define GRAPH_DATA_WIDTH (the_hash_algo->rawsz + 16)@@ -325,6 +327,32 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, chunk_repeated =1 ; else graph->chunk_base_graphs = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMINDEXES : +if (graph->chunk_bloom_indexes) + chunk_repeated =1 ; +else + graph->chunk_bloom_indexes = data + chunk_offset; +break ; + +case GRAPH_CHUNKID_BLOOMDATA : +if (graph->chunk_bloom_data) + chunk_repeated =1 ; +else { +uint32_t hash_version;
Quoted 9 lines
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 348
Quoted 5 lines
commit-graph.c +5
-0+ graph->chunk_bloom_data = data + chunk_offset; + hash_version =get_be32 (data + chunk_offset); + +if (hash_version !=1 ) +break ;Shouldn't we mark Bloom filter as not to be used? Or is it left for later commit?
We take care of this in line 375.
Quoted 10 lines
In the future it might be good idea to notify the user (perhaps protected with some advice.* option) that there is problem with Bloom filter data, namely that we have encountered unsupported hash version.
commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 350
Quoted 2 lines
commit-graph.c +2
-0+ + graph->bloom_filter_settings =xmalloc (sizeof (struct bloom_filter_settings ));Why is this structure allocated dynamically? We are leaking admittedly a small amount of memory because we never free this
xmalloc()result.
Quoted 4 lines
If we need this field being a pointer to struct to have NULL mean no supported Bloom filter data, we could have instead use chunk_bloom_* fields instead - we can set at least one of them to NULL.
I am freeing this up in free_commit_graph but I messed up putting it in the right commit. Sorry about that. Fixed in v3.
Also as discussed in https://lore.kernel.org/git/[email protected]/
there is a bug in commit-graph.c where we should be calling free_commit_graph() instead of just free(graph). I will do this in a separate series.
Quoted 23 lines
Quoted 9 lines
commit-graph.c +2
-0+ } +break ; }if (chunk_repeated) {@@ -343,6 +371,17 @@ struct commit_graph *parse_commit_graph(void *graph_map, int fd, last_chunk_offset = chunk_offset; }commit-graph.c struct commit_graph *parse_commit_graph(void *graph_map, int fd, · line 383
Quoted 10 lines
commit-graph.c +10
-0+/* We need both the bloom chunks to exist together. Else ignore the data */ +if ((graph->chunk_bloom_indexes && !graph->chunk_bloom_data) + || (!graph->chunk_bloom_indexes && graph->chunk_bloom_data)) { + graph->chunk_bloom_indexes =NULL ; + graph->chunk_bloom_data =NULL ; + graph->bloom_filter_settings =NULL ; + } + +if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) +load_bloom_filters ();Wouldn't it be simpler to rely on the fact that both Bloom chunks must exists for it to matter, and write it like this:
Quoted 8 lines
+ if (graph->chunk_bloom_indexes && graph->chunk_bloom_data) {
+ load_bloom_filters();
+ } else {
+ graph->chunk_bloom_indexes = NULL;
+ graph->chunk_bloom_data = NULL;
+ graph->bloom_filter_settings = NULL;
+ }:) Yes. Fixed in v3.
Quoted 7 lines
Quoted 7 lines
commit-graph.c +1
-0+static int oid_compare (const void *_a,const void *_b) {const struct object_id *a = (const struct object_id *)_a;@@ -1198,8 +1290,8 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)load_bloom_filters ();
Quoted 10 lines
commit-graph.c static void compute_bloom_filters(struct write_commit_graph_context *ctx) · line 1296
Quoted 7 lines
commit-graph.c +2
-2if (ctx->report_progress) - progress =start_progress ( -_ ("Computing commit diff Bloom filters" ), + progress =start_delayed_progress ( +_ ("Computing changed paths Bloom filters" ), ctx->commits.nr);Ooops. This look like a fixup which should be made to the original earlier commit instead, isn't it?
Yes. Should have been in a previous commit. Fixed in v3.
Quoted 14 lines
commit-graph.c enum commit_graph_write_flags { · line 85
Quoted 9 lines
commit-graph.c +0
-0};struct
commit_graph*load_commit_graph_one_fd_st(int fd, struct stat *st);commit-graph.c +1
-1@@ -77,7 +82,7 @@ enum commit_graph_write_flags {COMMIT_GRAPH_WRITE_SPLIT = (1 <<2 ),/* Make sure that each OID in the input is a valid commit OID. */ COMMIT_GRAPH_WRITE_CHECK_OIDS = (1 <<3 ), -COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 <<4 ) + COMMIT_GRAPH_WRITE_BLOOM_FILTERS = (1 << 4),This looks like accidental change; if we want to use trailing comma in enum, this change should be in my opinion done in the commit that added
COMMIT_GRAPH_WRITE_BLOOM_FILTERS(as I have written in a comment there).
Yes, I noticed the lack of the comma later and forgot to move it to the right commit. Fixed in v3.
Quoted 5 lines
Thank you for your work on this series.
Best,
Re: [PATCH v2 07/11] commit-graph: write Bloom filters to commit graph file
Quoted 2 lines · Garima Singh
Quoted 1 line · Jakub Narebski
"Garima Singh via GitGitGadget" <[email protected]> writes:
[...]
Quoted 18 lines
Quoted 8 lines
Quoted 8 lines
Documentation/technical/commit-graph-format.txt +0
-0@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file.Quoted 9 lines
Documentation/technical/commit-graph-format.txt metadata, including: · line 22
Quoted 3 lines
Documentation/technical/commit-graph-format.txt +3
-0+- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent. +All right.
Should we also state that it is optional (meta)data? This would be first optional piece of data stored in commit-graph, I think.
Quoted 6 lines
However the entire commit graph file is non critical metadata since git commands work just fine without it, just slower. The same applies to the changed path bloom filters.
Based on the definition of optional you are suggesting, edge data is optional because not every commit-graph has octopus merges.
Well, edge data (EDGE chunk) is optional in different way from Bloom filter data. The former depends on the repository (whether there are octopus merges used), the latter is opt-in user choice (whether to run git commit-graph write with the --changed-paths option, or in the future equivalent config option).
To provide some advise that can be acted upon: perhaps it would be better to start with "It can store", or end with "if requested" or "optionally". For example the change could look like the following suggestion:
The Git commit graph stores a list of commit OIDs and some associated metadata, including:
[...]
+- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent, if requested.
+
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 07/11] commit-graph: write Bloom filters to commit graph file
Quoted 48 lines · Jakub Narebski
Quoted 2 lines · Garima Singh
Quoted 1 line · Jakub Narebski
"Garima Singh via GitGitGadget" <[email protected]> writes:
[...]
Quoted 18 lines
Quoted 8 lines
Quoted 8 lines
Documentation/technical/commit-graph-format.txt +0
-0@@ -17,6 +17,9 @@ metadata, including: - The parents of the commit, stored using positional references within the graph file.Quoted 9 lines
Documentation/technical/commit-graph-format.txt metadata, including: · line 22
Quoted 3 lines
Documentation/technical/commit-graph-format.txt +3
-0+- The Bloom filter of the commit carrying the paths that were changed between + the commit and its first parent. +All right.
Should we also state that it is optional (meta)data? This would be first optional piece of data stored in commit-graph, I think.
Quoted 6 lines
However the entire commit graph file is non critical metadata since git commands work just fine without it, just slower. The same applies to the changed path bloom filters.
Based on the definition of optional you are suggesting, edge data is optional because not every commit-graph has octopus merges.
Well, edge data (EDGE chunk) is optional in different way from Bloom filter data. The former depends on the repository (whether there are octopus merges used), the latter is opt-in user choice (whether to run
git commit-graph writewith the--changed-pathsoption, or in the future equivalent config option).To provide some advise that can be acted upon: perhaps it would be better to start with "It can store", or end with "if requested" or "optionally". For example the change could look like the following suggestion:
The Git commit graph stores a list of commit OIDs and some associated metadata, including:
[...]
+- The Bloom filter of the commit carrying the paths that were changed between(quoted diff) +2
-0+ the commit and its first parent, if requested. +
Quoted 2 lines
Best,
Sure. That makes sense. Will incorporate in v3.
Cheers!
Garima Singh
PATCH v2 8/11 commit-graph: reuse existing Bloom filters during write.
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Read previously computed Bloom filters from the commit-graph file if possible to avoid recomputing during commit-graph write.
See Documentation/technical/commit-graph-format for the format in which the Bloom filter information is written to the commit graph file.
To read Bloom filter for a given commit with lexicographic position 'i' we need to:
1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter of commit i+1. It is essentially the index past the end of the filter of commit i. It is called end_index in the code.
2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for filter of commit i. It is called the start_index in the code. For the first commit, where i = 0, Bloom filter data starts at the beginning, just past the header in the BDAT chunk. Hence, start_index will be 0.
3. The length of the filter will be end_index - start_index, because BIDX[i] gives the cumulative 8-byte words including the ith commit's filter.
We toggle whether Bloom filters should be recomputed based on the compute_if_null flag.
--- bloom.c | 49 ++++++++++++++++++++++++++++++++++++++++++- bloom.h | 4 +++- commit-graph.c | 7 ++++--- t/helper/test-bloom.c | 2 +- 4 files changed, 56 insertions(+), 6 deletions(-)
bloom.c +48 -1
@@ -1,5 +1,7 @@#include "git-compat-util.h" #include "bloom.h" +#include "commit.h" +#include "commit-slab.h" #include "commit-graph.h" #include "object-store.h" #include "diff.h"
@@ -127,8 +129,39 @@ void add_key_to_filter(struct bloom_key *key, } } +static int load_bloom_filter_from_graph (struct commit_graph *g, +struct bloom_filter *filter, +struct commit *c) +{ +uint32_t lex_pos, start_index, end_index; + +while (c->graph_pos < g->num_commits_in_base) + g = g->base_graph; + +/* The commit graph commit 'c' lives in doesn't carry bloom filters. */ +if (!g->chunk_bloom_indexes) +return 0 ; + + lex_pos = c->graph_pos - g->num_commits_in_base; + + end_index =get_be32 (g->chunk_bloom_indexes +4 * lex_pos); + +if (lex_pos) + start_index =get_be32 (g->chunk_bloom_indexes +4 * (lex_pos -1 )); +else + start_index =0 ; + + filter->len = end_index - start_index; + filter->data = (uint64_t *)(g->chunk_bloom_data + +sizeof (uint64_t ) * start_index + +BLOOMDATA_CHUNK_HEADER_SIZE ); + +return 1 ; +} +struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c) +struct commit *c, +int compute_if_not_present) {struct bloom_filter *filter;struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;
@@ -141,6 +174,20 @@ struct bloom_filter *get_bloom_filter(struct repository *r, filter =bloom_filter_slab_at (&bloom_filters, c); +if (!filter->data) { +load_commit_graph_info (r, c); +if (c->graph_pos !=COMMIT_NOT_FROM_GRAPH && + r->objects->commit_graph->chunk_bloom_indexes) { +if (load_bloom_filter_from_graph (r->objects->commit_graph, filter, c)) +return filter; +else +return NULL ; + } + } + +if (filter->data || !compute_if_not_present) +return filter; +repo_diff_setup (r, &diffopt); diffopt.flags.recursive =1 ; diffopt.max_changes = max_changes;
bloom.h +3 -1
@@ -13,6 +13,7 @@ struct bloom_filter_settings {#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 }#define BITS_PER_WORD 64 +#define BLOOMDATA_CHUNK_HEADER_SIZE 3*sizeof(uint32_t)/* * A bloom_filter struct represents a data segment to
@@ -47,7 +48,8 @@ void add_key_to_filter(struct bloom_key *key, struct bloom_filter_settings *settings);struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c); +struct commit *c, +int compute_if_not_present); int bloom_filter_contains(struct bloom_filter *filter, struct bloom_key *key,
commit-graph.c +4 -3
@@ -1094,7 +1094,7 @@ static void write_graph_chunk_bloom_indexes(struct hashfile *f, ctx->commits.nr);while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 ); cur_pos += filter->len;display_progress (progress, ++i);hashwrite_be32 (f, cur_pos);
@@ -1123,7 +1123,7 @@ static void write_graph_chunk_bloom_data(struct hashfile *f,hashwrite_be32 (f, settings->bits_per_entry);while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 );display_progress (progress, ++i);hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); list++;
@@ -1304,7 +1304,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i]; -struct bloom_filter *filter =get_bloom_filter (ctx->r, c); +struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); }
@@ -2314,6 +2314,7 @@ void free_commit_graph(struct commit_graph *g) g->data =NULL ;close (g->graph_fd); } +free (g->bloom_filter_settings);free (g->filename);free (g); }
t/helper/test-bloom.c +1 -1
@@ -47,7 +47,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid)struct bloom_filter *filter;setup_git_directory (); c =lookup_commit (the_repository, commit_oid); - filter =get_bloom_filter (the_repository, c); + filter =get_bloom_filter (the_repository, c,1 );print_bloom_filter (filter); }
Signature · 1 line
gitgitgadget
Re: [PATCH v2 08/11] commit-graph: reuse existing Bloom filters during write.
Quoted 4 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Read previously computed Bloom filters from the commit-graph file if possible to avoid recomputing during commit-graph write.
All right, what is written makes sense for this point in patch series.
But it my opinion it is more important to state that this commit adds "parsing" of the Bloom filter data from commit-graph file. This means that it needs to be calculated only once, then stored in commit-graph, ready to be re-used.
Quoted 16 lines
See
Documentation/technical/commit-graph-formatfor the format in which the Bloom filter information is written to the commit graph file.To read Bloom filter for a given commit with lexicographic position 'i' we need to:
1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter of commit i+1. It is essentially the index past the end of the filter of commit i. It is calledend_indexin the code.2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for filter of commit i. It is called the
start_indexin the code. For the first commit, where i = 0, Bloom filter data starts at the beginning, just past the header in the BDAT chunk. Hence,start_indexwill be 0.
Quoted 6 lines
3. The length of the filter will be
end_index-start_index, because BIDX[i] gives the cumulative 8-byte words including the ith commit's filter.We toggle whether Bloom filters should be recomputed based on the
compute_if_nullflag.
Nitpick: the flag (the parameter) is called compute_if_not_present, not compute_if_null.
All right, this explanation is nice and clear.
Quoted 30 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- bloom.c | 49 ++++++++++++++++++++++++++++++++++++++++++- bloom.h | 4 +++- commit-graph.c | 7 ++++--- t/helper/test-bloom.c | 2 +- 4 files changed, 56 insertions(+), 6 deletions(-)bloom.c +6
-0@@ -1,5 +1,7 @@#include "git-compat-util.h" #include "bloom.h" +#include "commit.h" +#include "commit-slab.h" #include "commit-graph.h" #include "object-store.h" #include "diff.h" @@ -127,8 +129,39 @@ void add_key_to_filter(struct bloom_key *key, } } +static int load_bloom_filter_from_graph (struct commit_graph *g, +struct bloom_filter *filter, +struct commit *c) +{
bloom.c void add_key_to_filter(struct bloom_key *key, · line 145
Quoted 10 lines
bloom.c +10
-0+uint32_t lex_pos, start_index, end_index; + +while (c->graph_pos < g->num_commits_in_base) + g = g->base_graph; + +/* The commit graph commit 'c' lives in doesn't carry bloom filters. */ +if (!g->chunk_bloom_indexes) +return 0 ; + + lex_pos = c->graph_pos - g->num_commits_in_base;
All right, this finds lexicographical position of the commit following the chain of incremental commit-graph files, and also check if the commit-graph fragment that contains the commit in question has Bloom filter data included.
bloom.c void add_key_to_filter(struct bloom_key *key, · line 149
Quoted 4 lines
bloom.c +4
-0+ + end_index =get_be32 (g->chunk_bloom_indexes +4 * lex_pos); + +if (lex_pos)
Wouldn't it be better to be more explicit, and write
+ if (lex_pos > 0)
bloom.c void add_key_to_filter(struct bloom_key *key, · line 152
Quoted 3 lines
bloom.c +3
-0+ start_index =get_be32 (g->chunk_bloom_indexes +4 * (lex_pos -1 )); + else + start_index =0 ;
All right, here we find start_index and end_index.
It might be good idea to at least assert() that start_index <= end_index, though that should not happen (that is why I propose for this check to be compiled on only for debug builds).
bloom.c void add_key_to_filter(struct bloom_key *key, · line 157
Quoted 5 lines
bloom.c +5
-0+ + filter->len = end_index - start_index; + filter->data = (uint64_t *)(g->chunk_bloom_data + +sizeof (uint64_t ) * start_index + +BLOOMDATA_CHUNK_HEADER_SIZE );
All right, nice use of constant.
Quoted 12 lines
bloom.c +6
-1+ +return 1 ; +} +struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c) +struct commit *c, +int compute_if_not_present) {struct bloom_filter *filter;struct bloom_filter_settings settings =DEFAULT_BLOOM_FILTER_SETTINGS ;
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 180
Quoted 7 lines
bloom.c +4
-0@@ -141,6 +174,20 @@ struct bloom_filter *get_bloom_filter(struct repository *r, filter =bloom_filter_slab_at (&bloom_filters, c); +if (!filter->data) { +load_commit_graph_info (r, c); +if (c->graph_pos !=COMMIT_NOT_FROM_GRAPH && + r->objects->commit_graph->chunk_bloom_indexes) {
All right, the limitation that the top layer of incremental commit graph needs to have Bloom filters enabled for it to be even considered is reasonable tradeoff, in my opinion.
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 184
Quoted 4 lines
bloom.c +4
-0+if (load_bloom_filter_from_graph (r->objects->commit_graph, filter, c)) +return filter; +else +return NULL ;
If it should have filter, return it, otherwise return NULL.
I wonder however when it can return NULL (and whether it should compute Bloom filters if required instead).
bloom.c struct bloom_filter *get_bloom_filter(struct repository *r, · line 189
Quoted 5 lines
bloom.c +5
-0+ } + } + +if (filter->data || !compute_if_not_present) +return filter;
If we have filter from slab, return it. All right.
However, according to documentation contained in comments in commit-slab.h, bloom_filter_slab_at() will allocate the location to store the data, and return freshly allocated memory... fortunately it uses xcalloc() so returned bloom_filter would have ->len == 0 and ->data == 0.
bloom.h struct bloom_filter_settings { · line 16
Quoted 13 lines
bloom.c +1
-0+repo_diff_setup (r, &diffopt); diffopt.flags.recursive =1 ; diffopt.max_changes = max_changes;bloom.h +1
-0@@ -13,6 +13,7 @@ struct bloom_filter_settings {#define DEFAULT_BLOOM_FILTER_SETTINGS { 1, 7, 10 }#define BITS_PER_WORD 64 +#define BLOOMDATA_CHUNK_HEADER_SIZE 3*sizeof(uint32_t)
All right.
bloom.h void add_key_to_filter(struct bloom_key *key, · line 53
Quoted 11 lines
bloom.h +2
-1/* * A bloom_filter struct represents a data segment to @@ -47,7 +48,8 @@ void add_key_to_filter(struct bloom_key *key, struct bloom_filter_settings *settings);struct bloom_filter *get_bloom_filter (struct repository *r, -struct commit *c); +struct commit *c, +int compute_if_not_present);
All right, adding new parameter (changing function signature).
Quoted 16 lines
bloom.h +0
-0int bloom_filter_contains(struct bloom_filter *filter, struct bloom_key *key,commit-graph.c +1
-1@@ -1094,7 +1094,7 @@ static void write_graph_chunk_bloom_indexes(struct hashfile *f, ctx->commits.nr);while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 ); cur_pos += filter->len;display_progress (progress, ++i);hashwrite_be32 (f, cur_pos);
commit-graph.c static void write_graph_chunk_bloom_data(struct hashfile *f, · line 1129
Quoted 8 lines
commit-graph.c +1
-1@@ -1123,7 +1123,7 @@ static void write_graph_chunk_bloom_data(struct hashfile *f,hashwrite_be32 (f, settings->bits_per_entry);while (list < last) { -struct bloom_filter *filter =get_bloom_filter (ctx->r, *list); +struct bloom_filter *filter =get_bloom_filter (ctx->r, *list,0 );display_progress (progress, ++i);hashwrite (f, filter->data, filter->len *sizeof (uint64_t )); list++;
All right, if needed (that is, if '--changed-path' option from the future commit is provided to 'git commit-graph write'), compute_bloom_filters() would be called befor write_commit_graph_file(), which in turn runs write_graph_chunk_bloom_index() and *_data().
Actually, when writing Bloom data chunks (BIDX and BDAT) we could have requested recomputing filters if necessary: slab storage works as memoization, so you would calculate Bloom filter data for each commit in the commit-graph only once. And write_graph_chunk_bloom_indexes() and write_graph_chunk_bloom_data() are called only if ctx->changed_paths is true.
So it would work with
+ struct bloom_filter *filter = get_bloom_filter(ctx->r, *list, 1);
Only in the future we would really need to call with compute_if_not_present parameter set to falsy value.
Quoted 10 lines
commit-graph.c +1
-1@@ -1304,7 +1304,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i]; -struct bloom_filter *filter =get_bloom_filter (ctx->r, c); +struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); }
commit-graph.c void free_commit_graph(struct commit_graph *g) · line 2319
Quoted 6 lines
commit-graph.c +1
-0@@ -2314,6 +2314,7 @@ void free_commit_graph(struct commit_graph *g) g->data =NULL ;close (g->graph_fd); } +free (g->bloom_filter_settings);free (g->filename);free (g);
Shouldn't this fixup be added to earlier commit?
t/helper/test-bloom.c static void get_bloom_filter_for_commit(const struct object_id *commit_oid) · line 52
Quoted 13 lines
commit-graph.c +0
-0}t/helper/test-bloom.c +1
-1@@ -47,7 +47,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid)struct bloom_filter *filter;setup_git_directory (); c =lookup_commit (the_repository, commit_oid); - filter =get_bloom_filter (the_repository, c); + filter =get_bloom_filter (the_repository, c,1 );print_bloom_filter (filter); }
I would like to see some tests, but that needs to wait for patch that adds --changed-paths option to the 'write' subcommand.
Things to be tested:
1. That after reading commit-graph with Bloom filter:
- that commit(s) in commit-graph have Bloom filter
- that commits outside commit-graph do not have Bloom filter
2. That incremental commit-graph feature works:
- for commits in deeper layer that have Bloom filter chunks
- for commits in deeper layer that do not have Bloom filter chunks
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 08/11] commit-graph: reuse existing Bloom filters during write.
Quoted 7 lines · Jakub Narebski
Quoted 4 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Read previously computed Bloom filters from the commit-graph file if possible to avoid recomputing during commit-graph write.
Quoted 7 lines
All right, what is written makes sense for this point in patch series.
But it my opinion it is more important to state that this commit adds "parsing" of the Bloom filter data from commit-graph file. This means that it needs to be calculated only once, then stored in commit-graph, ready to be re-used.
Good point. Incorporated in v3.
Quoted 20 lines
Quoted 20 lines
See
Documentation/technical/commit-graph-formatfor the format in which the Bloom filter information is written to the commit graph file.To read Bloom filter for a given commit with lexicographic position 'i' we need to:
1. Read BIDX[i] which essentially gives us the starting index in BDAT for filter of commit i+1. It is essentially the index past the end of the filter of commit i. It is calledend_indexin the code.2. For i>0, read BIDX[i-1] which will give us the starting index in BDAT for filter of commit i. It is called the
start_indexin the code. For the first commit, where i = 0, Bloom filter data starts at the beginning, just past the header in the BDAT chunk. Hence,start_indexwill be 0.3. The length of the filter will be
end_index-start_index, because BIDX[i] gives the cumulative 8-byte words including the ith commit's filter.
Quoted 6 lines
Quoted 2 lines
We toggle whether Bloom filters should be recomputed based on the
compute_if_nullflag.Nitpick: the flag (the parameter) is called
compute_if_not_present, notcompute_if_null.
Oops. Fixed in v3.
Quoted 10 lines
bloom.c void add_key_to_filter(struct bloom_key *key, · line 149
Quoted 4 lines
bloom.c +4
-0+ + end_index =get_be32 (g->chunk_bloom_indexes +4 * lex_pos); + +if (lex_pos)Wouldn't it be better to be more explicit, and write
+ if (
lex_pos> 0)
Sure.
Quoted 10 lines
bloom.c void add_key_to_filter(struct bloom_key *key, · line 152
Quoted 3 lines
bloom.c +3
-0+ start_index =get_be32 (g->chunk_bloom_indexes +4 * (lex_pos -1 )); + else + start_index =0 ;All right, here we find
start_indexandend_index.It might be good idea to at least
assert()thatstart_index<=end_index, though that should not happen (that is why I propose for this check to be compiled on only for debug builds).
I will look into this. Thanks!
Quoted 19 lines
Quoted 10 lines
commit-graph.c +1
-1@@ -1304,7 +1304,7 @@ static void compute_bloom_filters(struct write_commit_graph_context *ctx)for (i =0 ; i < ctx->commits.nr; i++) {struct commit *c = sorted_by_pos[i]; -struct bloom_filter *filter =get_bloom_filter (ctx->r, c); +struct bloom_filter *filter =get_bloom_filter (ctx->r, c,1 ); ctx->total_bloom_filter_data_size +=sizeof (uint64_t ) * filter->len;display_progress (progress, i +1 ); }commit-graph.c void free_commit_graph(struct commit_graph *g) · line 2319
Quoted 6 lines
commit-graph.c +1
-0@@ -2314,6 +2314,7 @@ void free_commit_graph(struct commit_graph *g) g->data =NULL ;close (g->graph_fd); } +free (g->bloom_filter_settings);free (g->filename);free (g);Shouldn't this fixup be added to earlier commit?
Yes.
Quoted 17 lines
t/helper/test-bloom.c static void get_bloom_filter_for_commit(const struct object_id *commit_oid) · line 52
Quoted 13 lines
(quoted diff) +0
-0}t/helper/test-bloom.c +1
-1@@ -47,7 +47,7 @@ static void get_bloom_filter_for_commit(const struct object_id *commit_oid)struct bloom_filter *filter;setup_git_directory (); c =lookup_commit (the_repository, commit_oid); - filter =get_bloom_filter (the_repository, c); + filter =get_bloom_filter (the_repository, c,1 );print_bloom_filter (filter); }I would like to see some tests, but that needs to wait for patch that adds --changed-paths option to the 'write' subcommand.
Quoted 8 lines
Things to be tested:
1. That after reading commit-graph with Bloom filter:
- that commit(s) in commit-graph have Bloom filter
- that commits outside commit-graph do not have Bloom filter
2. That incremental commit-graph feature works:
- for commits in deeper layer that have Bloom filter chunks
- for commits in deeper layer that do not have Bloom filter chunks
Included in later commits.
Quoted 2 lines
Best,
PATCH v2 9/11 commit-graph: add --changed-paths option to write subcommand
In reply to Garima Singh via GitGitGadgetFrom: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will allow users to compute information about the paths that have changed between a commit and its first parent, and write it into the commit graph file. If the option is passed to the write subcommand we set the COMMIT_GRAPH_WRITE_BLOOM_FILTERS flag and pass it down to the commit-graph logic.
--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- 2 files changed, 12 insertions(+), 2 deletions(-)
Documentation/git-commit-graph.txt +5 -0
@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can +take a while on large repositories. It provides significant performance gains +for getting history of a directory or a file with `git log -- <path>`. ++ With the `--split` option, write the commit-graph as a chain of multiple commit-graph files stored in `<dir>/info/commit-graphs`. The new commits not already in the commit-graph are added in a new "tip" file. This file
builtin/commit-graph.c +7 -2
@@ -9,7 +9,7 @@static char const *const builtin_commit_graph_usage[] = {N_ ("git commit-graph verify [--object-dir <objdir>] [--shallow] [--[no-]progress]" ), -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
@@ -19,7 +19,7 @@ static const char * const builtin_commit_graph_verify_usage[] = { };static const char *const builtin_commit_graph_write_usage[] = { -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
@@ -32,6 +32,7 @@ static struct opts_commit_graph {int split;int shallow;int progress; +int enable_changed_paths; } opts;static int graph_verify (int argc,const char **argv)
@@ -110,6 +111,8 @@ static int graph_write(int argc, const char **argv) N_("start walk at commits listed by stdin")),OPT_BOOL (0 ,"append" , &opts.append,N_ ("include all commits already in the commit-graph file" )), +OPT_BOOL (0 ,"changed-paths" , &opts.enable_changed_paths, +N_ ("enable computation for changed paths" )),OPT_BOOL (0 ,"progress" , &opts.progress,N_ ("force progress reporting" )),OPT_BOOL (0 ,"split" , &opts.split, N_("allow writing an incremental commit-graph file")),
@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; +if (opts.enable_changed_paths) + flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ; read_replace_refs =0 ;
Signature · 1 line
gitgitgadget
Re: [PATCH v2 09/11] commit-graph: add --changed-paths option to write subcommand
Quoted 8 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will allow users to compute information about the paths that have changed between a commit and its first parent, and write it into the commit graph file. If the option is passed to the write subcommand we set the
COMMIT_GRAPH_WRITE_BLOOM_FILTERSflag and pass it down to the commit-graph logic.
In the manpage you write that this operation (computing Bloom filters) can take a while on large repositories. Could you perhaps provide some
numbers: how much longer does it take to write commit-graph file with and without '--changed-paths' for example for Linux kernel, or some other large repository? Thanks in advance.
Quoted 7 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- 2 files changed, 12 insertions(+), 2 deletions(-)
What is missing is some sanity tests: that bloom index and bloom data chunks are not present without '--changed-paths', and that they are added with '--changed-paths'.
If possible, maybe also check in a separate test that the size of bloom_index chunk agrees with the number of commits in the commit graph.
Also, we can now add those tests I have wrote about in my review of previous patch, that is:
1. If you write commit-graph with --changed-paths, and either add some commits later or exclude some commits from the commit graph, then:
a.) commit(s) in commit-graph have Bloom filter b.) commit(s) not in commit-graph do not have Bloom filter
2. If you write commit-graph without --changed-paths as base layer, and then write next layer with --changed-paths and --split, then:
a.) commit(s) in top layer have Bloom filter(s) b.) commit(s) in bottom layer don't have Bloom filter(s)
Quoted 6 lines
Documentation/git-commit-graph.txt +0
-0
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 61
Quoted 8 lines
Documentation/git-commit-graph.txt +5
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can +take a while on large repositories. It provides significant performance gains +for getting history of a directory or a file with `git log -- <path>`. ++
Should we write about limitation that the topmost layer in the split commit graph needs to be written with '--changed-paths' for Git to use this information? Or perhaps we should try (in the future) to remove this limitation??
Quoted 17 lines
Documentation/git-commit-graph.txt +0
-0With the `--split` option, write the commit-graph as a chain of multiple commit-graph files stored in `<dir>/info/commit-graphs`. The new commits not already in the commit-graph are added in a new "tip" file. This filebuiltin/commit-graph.c +1
-1@@ -9,7 +9,7 @@static char const *const builtin_commit_graph_usage[] = {N_ ("git commit-graph verify [--object-dir <objdir>] [--shallow] [--[no-]progress]" ), -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
builtin/commit-graph.c static const char * const builtin_commit_graph_verify_usage[] = { · line 25
Quoted 8 lines
builtin/commit-graph.c +1
-1@@ -19,7 +19,7 @@ static const char * const builtin_commit_graph_verify_usage[] = { };static const char *const builtin_commit_graph_write_usage[] = { -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };
All right.
builtin/commit-graph.c static struct opts_commit_graph { · line 35
Quoted 5 lines
builtin/commit-graph.c +1
-0@@ -32,6 +32,7 @@ static struct opts_commit_graph {int split;int shallow;int progress; +int enable_changed_paths;
Bikeshed painting: should this field be called enable_changed_paths or simply changed_paths?
builtin/commit-graph.c static int graph_write(int argc, const char **argv) · line 118
Quoted 12 lines
builtin/commit-graph.c +2
-0} opts;static int graph_verify (int argc,const char **argv)@@ -110,6 +111,8 @@ static int graph_write(int argc, const char **argv) N_("start walk at commits listed by stdin")),OPT_BOOL (0 ,"append" , &opts.append,N_ ("include all commits already in the commit-graph file" )), +OPT_BOOL (0 ,"changed-paths" , &opts.enable_changed_paths, +N_ ("enable computation for changed paths" )),OPT_BOOL (0 ,"progress" , &opts.progress,N_ ("force progress reporting" )),OPT_BOOL (0 ,"split" , &opts.split, N_("allow writing an incremental commit-graph file")),
All right.
builtin/commit-graph.c static int graph_write(int argc, const char **argv) · line 152
Quoted 8 lines
builtin/commit-graph.c +2
-0@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; +if (opts.enable_changed_paths) + flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ; read_replace_refs =0 ;
All right. This actually turns on calculation Bloom filters for changed paths, thanks to
ctx->changed_paths = flags & COMMIT_GRAPH_WRITE_BLOOM_FILTERS ? 1 : 0;
that was added by the "[PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths" patch.
Though... should this enabling be split into two separate patches like this?
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 09/11] commit-graph: add --changed-paths option to write subcommand
Quoted 11 lines · Jakub Narebski
Quoted 8 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will allow users to compute information about the paths that have changed between a commit and its first parent, and write it into the commit graph file. If the option is passed to the write subcommand we set the
COMMIT_GRAPH_WRITE_BLOOM_FILTERSflag and pass it down to the commit-graph logic.
Quoted 6 lines
In the manpage you write that this operation (computing Bloom filters) can take a while on large repositories. Could you perhaps provide some
numbers: how much longer does it take to write commit-graph file with and without '--changed-paths' for example for Linux kernel, or some other large repository? Thanks in advance.
Yes. Will include numbers as appropriate in v3.
Quoted 22 lines
Quoted 7 lines
Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- 2 files changed, 12 insertions(+), 2 deletions(-)What is missing is some sanity tests: that bloom index and bloom data chunks are not present without '--changed-paths', and that they are added with '--changed-paths'.
If possible, maybe also check in a separate test that the size of
bloom_indexchunk agrees with the number of commits in the commit graph.Also, we can now add those tests I have wrote about in my review of previous patch, that is:
1. If you write commit-graph with --changed-paths, and either add some commits later or exclude some commits from the commit graph, then:
Quoted 9 lines
a.) commit(s) in commit-graph have Bloom filter b.) commit(s) not in commit-graph do not have Bloom filter
2. If you write commit-graph without --changed-paths as base layer, and then write next layer with --changed-paths and --split, then:
a.) commit(s) in top layer have Bloom filter(s) b.) commit(s) in bottom layer don't have Bloom filter(s)
I will see what more can be done here.
Quoted 11 lines
Quoted 11 lines
Documentation/git-commit-graph.txt +2
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can
Quoted 9 lines
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 61
Quoted 3 lines
Documentation/git-commit-graph.txt +3
-0+take a while on large repositories. It provides significant performance gains +for getting history of a directory or a file with `git log -- <path>`. ++Should we write about limitation that the topmost layer in the split commit graph needs to be written with '--changed-paths' for Git to use this information? Or perhaps we should try (in the future) to remove this limitation??
Given that this information is going to be used best effort, it would be superfluous to describe every case and conditional that decides whether this information is being used.
Quoted 12 lines
Documentation/git-commit-graph.txt static int graph_write(int argc, const char **argv) · line 152
Quoted 8 lines
Documentation/git-commit-graph.txt +2
-0@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |= COMMIT_GRAPH_WRITE_SPLIT; if (opts.progress) flags |= COMMIT_GRAPH_WRITE_PROGRESS; + if (opts.enable_changed_paths) + flags |= COMMIT_GRAPH_WRITE_BLOOM_FILTERS; read_replace_refs = 0;All right. This actually turns on calculation Bloom filters for changed paths, thanks to
Quoted 8 lines
ctx->changed_paths= flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS? 1 : 0;that was added by the "[PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths" patch.
Though... should this enabling be split into two separate patches like this?
The idea is that in 4/11 We compute only if the flag is set. And between that patch and this one: we prepare the foundational code that is now ready for that flag to be set via an opt-in by the user.
Quoted 3 lines
Best,
Re: [PATCH v2 09/11] commit-graph: add --changed-paths option to write subcommand
Quoted 2 lines · Garima Singh
Quoted 1 line · Jakub Narebski
"Garima Singh via GitGitGadget" <[email protected]> writes:
[...]
Quoted 17 lines
Quoted 8 lines
Quoted 8 lines
Documentation/git-commit-graph.txt +2
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation canQuoted 8 lines
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 61
Quoted 3 lines
Documentation/git-commit-graph.txt +3
-0+take a while on large repositories. It provides significant performance gains +for getting history of a directory or a file with `git log -- <path>`. ++Should we write about limitation that the topmost layer in the split commit graph needs to be written with '--changed-paths' for Git to use this information? Or perhaps we should try (in the future) to remove this limitation?
Quoted 3 lines
Given that this information is going to be used best effort, it would be superfluous to describe every case and conditional that decides whether this information is being used.
I can somewhat agree with this reasoning.
However what I would like to avoid is surprising users. If one creates base commit-graph with Bloom filters data, but then when creating new layer of commit-graph (updating it incrementally), it may be surprising that git log -- <path> is now much slower.
On the other hand if one would update commit-graph in a non-incremental way (rewriting the commit-graph file), loosing the Bloom filter information and performance of git log -- <path> because one forgot to include --changed-paths is not that unexpected.
Anyway, in the future when this mechanism will be controlled by appropriate config variable, this whole discussion would become somewhat moot.
Thought for the future: perhaps git commit-graph verify could detect that split graph has Bloom filters only for some layers, and inform the user? But that is almost certainly out of scope of this patch series.
Quoted 17 lines
Quoted 17 lines
Documentation/git-commit-graph.txt static int graph_write(int argc, const char **argv) · line 152
Quoted 8 lines
Documentation/git-commit-graph.txt +2
-0@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |= COMMIT_GRAPH_WRITE_SPLIT; if (opts.progress) flags |= COMMIT_GRAPH_WRITE_PROGRESS; + if (opts.enable_changed_paths) + flags |= COMMIT_GRAPH_WRITE_BLOOM_FILTERS; read_replace_refs = 0;All right. This actually turns on calculation Bloom filters for changed paths, thanks to
ctx->changed_paths= flags &COMMIT_GRAPH_WRITE_BLOOM_FILTERS? 1 : 0;that was added by the "[PATCH v2 04/11] commit-graph: compute Bloom filters for changed paths" patch.
Quoted 6 lines
Quoted 2 lines
Though... should this enabling be split into two separate patches like this?
The idea is that in 4/11 We compute only if the flag is set. And between that patch and this one: we prepare the foundational code that is now ready for that flag to be set via an opt-in by the user.
All right.
Choosing how to split large change into series is not easy. One one hand one would want for each change to be small and self contained. On the other hand it would be good if each change was testable (test-tool can help here).
Best,
Signature · 1 line
Jakub Narębski
Re: [PATCH v2 09/11] commit-graph: add --changed-paths option to write subcommand
In reply to Garima Singh via GitGitGadgetQuoted 22 lines · Garima Singh via GitGitGadget
From: Garima Singh <[email protected]>
Add --changed-paths option to git commit-graph write. This option will allow users to compute information about the paths that have changed between a commit and its first parent, and write it into the commit graph file. If the option is passed to the write subcommand we set the
COMMIT_GRAPH_WRITE_BLOOM_FILTERSflag and pass it down to the commit-graph logic.Helped-by Derrick Stolee <[email protected]>Signed-off-by Garima Singh <[email protected]>--- Documentation/git-commit-graph.txt | 5 +++++ builtin/commit-graph.c | 9 +++++++-- 2 files changed, 12 insertions(+), 2 deletions(-)Documentation/git-commit-graph.txt +0
-0
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 58
Quoted 5 lines
Documentation/git-commit-graph.txt +2
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can
"its first parent"
(Pardon the grammar nit from the peanut gallery!)
Quoted 57 lines
Documentation/git-commit-graph.txt +3
-0+take a while on large repositories. It provides significant performance gains +for getting history of a directory or a file with `git log -- <path>`. ++ With the `--split` option, write the commit-graph as a chain of multiple commit-graph files stored in `<dir>/info/commit-graphs`. The new commits not already in the commit-graph are added in a new "tip" file. This filebuiltin/commit-graph.c +7
-3@@ -9,7 +9,7 @@static char const *const builtin_commit_graph_usage[] = {N_ ("git commit-graph verify [--object-dir <objdir>] [--shallow] [--[no-]progress]" ), -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };@@ -19,7 +19,7 @@ static const char * const builtin_commit_graph_verify_usage[] = { };static const char *const builtin_commit_graph_write_usage[] = { -N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--[no-]progress] <split options>" ), +N_ ("git commit-graph write [--object-dir <objdir>] [--append|--split] [--reachable|--stdin-packs|--stdin-commits] [--changed-paths] [--[no-]progress] <split options>" ),NULL };@@ -32,6 +32,7 @@ static struct opts_commit_graph {int split;int shallow;int progress; +int enable_changed_paths; } opts;static int graph_verify (int argc,const char **argv)@@ -110,6 +111,8 @@ static int graph_write(int argc, const char **argv) N_("start walk at commits listed by stdin")),OPT_BOOL (0 ,"append" , &opts.append,N_ ("include all commits already in the commit-graph file" )), +OPT_BOOL (0 ,"changed-paths" , &opts.enable_changed_paths, +N_ ("enable computation for changed paths" )),OPT_BOOL (0 ,"progress" , &opts.progress,N_ ("force progress reporting" )),OPT_BOOL (0 ,"split" , &opts.split, N_("allow writing an incremental commit-graph file")),@@ -143,6 +146,8 @@ static int graph_write(int argc, const char **argv) flags |=COMMIT_GRAPH_WRITE_SPLIT ;if (opts.progress) flags |=COMMIT_GRAPH_WRITE_PROGRESS ; +if (opts.enable_changed_paths) + flags |=COMMIT_GRAPH_WRITE_BLOOM_FILTERS ; read_replace_refs =0 ; --gitgitgadget
Re: [PATCH v2 09/11] commit-graph: add --changed-paths option to write subcommand
Quoted 15 lines · Bryan Turner
Documentation/git-commit-graph.txt or `--stdin-packs`.) · line 58
Quoted 10 lines · Garima Singh via GitGitGadget
Documentation/git-commit-graph.txt +2
-0@@ -54,6 +54,11 @@ or `--stdin-packs`.) With the `--append` option, include all commits that are present in the existing commit-graph file. + +With the `--changed-paths` option, compute and write information about the +paths changed between a commit and it's first parent. This operation can"its first parent"
Quoted 2 lines
(Pardon the grammar nit from the peanut gallery!)
:)
Thank you! Fixed in v3.
Cheers!
Garima Singh